TCONS_00062323 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062323
Unique NameTCONS_00062323
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062323 ID=TCONS_00062323|Name=TCONS_00062323|organism=Clytia hemisphaerica|type=transcript|length=429bp
CATGACTATCACTAAGTAATAACAATGGAAAAAATGATGGGCAGCTGTGA
GCTCTTAAACTCGTCCTTGGTGTTAAAGCTAGGTTTTATCTCCCTAATAT
ATAGTACCTCACAATAGTcaataaatgtttttcttctttgattACAACCT
ACAATTTCAAGGGCTTTAAATTCAGATGTACATTCACAGAGGCCCCTCAA
GCGGTTTCCGTGGTGACGTTATAGGGACAATTTtgcagcgtgattacgtg
atttggaatgatttttttcgtaattgcgtgatgagaggtcaaaacgtgat
cgtgatttgaaaggtttttgagccgtgatacgttatttggactttttcaa
agggatacGTGTTTGGTAATTTTATTTGCTGATTTGCGtaatcgtgattg
aagacaaaaaattgcgtgatatcgtgatc
Run BLAST on NCBI

transcript from alignment at scaffold_362:1024872..1025300

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062323 ID=TCONS_00062323|Name=TCONS_00062323|organism=Clytia hemisphaerica|type=transcript|length=429bp|location=Sequence derived from alignment at scaffold_362:1024872..1025300 (Clytia hemisphaerica)
gatcacgatatcacgcaattttttgtcttcaatcacgattaCGCAAATCA
GCAAATAAAATTACCAAACACgtatccctttgaaaaagtccaaataacgt
atcacggctcaaaaacctttcaaatcacgatcacgttttgacctctcatc
acgcaattacgaaaaaaatcattccaaatcacgtaatcacgctgcaAAAT
TGTCCCTATAACGTCACCACGGAAACCGCTTGAGGGGCCTCTGTGAATGT
ACATCTGAATTTAAAGCCCTTGAAATTGTAGGTTGTaatcaaagaagaaa
aacatttattgACTATTGTGAGGTACTATATATTAGGGAGATAAAACCTA
GCTTTAACACCAAGGACGAGTTTAAGAGCTCACAGCTGCCCATCATTTTT
TCCATTGTTATTACTTAGTGATAGTCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039061XLOC_039061Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062323-exon-scaffold_362-1491911889:1024872..1025300TCONS_00062323-exon-scaffold_362-1491911889:1024872..1025300Clytia hemisphaericaexon
TCONS_00062323-exon-scaffold_362-1510915933:1024872..1025300TCONS_00062323-exon-scaffold_362-1510915933:1024872..1025300Clytia hemisphaericaexon
TCONS_00062323-exon-scaffold_362-1575043694:1024872..1025300TCONS_00062323-exon-scaffold_362-1575043694:1024872..1025300Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:1024872..1025300 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.157256	0.18259	0.198612	0.670352	0.171849	0.414657	0	0	0.171842	0	0	0.914916	1.2685	0.18546	0.0994685	0	0	8.47298	4.06987	0	0	0	0	0.178885	0	0	0	0.178989	0.364722
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062323 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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