TCONS_00062316 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062316
Unique NameTCONS_00062316
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062316 ID=TCONS_00062316|Name=TCONS_00062316|organism=Clytia hemisphaerica|type=transcript|length=1641bp
ACAGTATTTACAAAATAATATCAAGCTTTAAGATAACATGATGGGAATAT
GTAATACAAacttaaaaatttccaaaaaaatatcataataCTGGATGAAT
ATGCttctaaaatatttaaaaaatgcttatacaaaaatgatttcacATTC
TGGTAAAATGTCACTAAATCTTCGACAGCCATCTTCGGTGATCGAATCAC
ACGGTACCGAAGAATTCGGCAATGTTATCAAGGAACGAGCTTGCAGAACT
ACGGATTGAAACGAGTCTGGAAGTAGTCGTGCAAAAGATATAAGTTCTTT
ATCATTTGTTATACATTTTGTACCAGTGAGCTCTAAACTGTGTATACTAT
GAAAGAATTTGAGTGAGTGTTCCAAACCAGTGTTCGTTAAAAGTAAACAT
TGCTCAAGTGAGAGGTATAGTAAATGTGGTAAATTTTTAGCAATAACACT
TAATCCAAAGTCTGTAATATTCCAATCTTTCATAGAAAGTTTAATGAGGT
TGCGAGCACACGGTGATTGAGCTATAGAGAAAATAGAGAGATCAGTTAAC
CGGCTATGTACACCAGCTCGTAAACTGAAGCTATCCAGGTTGTGGCAGTG
ATTCATAATGCTCATAACACCTAAATCTGATACAGTAGCTGTGTTGCCGA
ACTCTAAATGCTCCAGTGATTGACAACATTCAGCTATAACTTGAAGTGTA
AAGTCAGTAATAAAAGTCTCCTTCAAGTCTAGTCGCAACAGATTCGTGCT
TCGTGTACACAGAGCTATAACACCATTATCTGATAAAGGGGCAGTGTGAG
TTTTCTGTCCAATTTCTACGCATTCGATTCTCTTACACTGGGATCCAATT
CTCCATAAGGCGTGGTCATCAATGGATGTTATAGGATAACGTAAGATTAA
AACTTGTAATTTCAAACAGTTTGATGCAAGTAATTCGATCATTTGGTTTG
TAAGTGATACAAGTTTATTTTGATTCAGTTTGTTCGATTTGTAGTTTGGA
GTGAATTCGTTTTGCTCGACATGAAGATATTCTAGATGTTTACAATTTGT
TGATAATATTTGTATGGTTTTGAGTGTCACGGTATGCGGTGCTGAGGTCA
ACTCAATTAAATGTTTGTTTTCTTGTAGTAAGTAACATAGACCGTGTTCC
GTGACAAGTGTGTTGAGTGTGTTTACCGTGCGTAGATTTTGGCACGCGCG
TGCTAGTGTGATGATTCCACGATCAGtgattttgaaacaattttcaaGAT
TCAGGTTTTGTAGGCGTGATCCATTGATAGACACACCTCTCAAAACTTTG
TTGCTGATTTGATAACATCCACGTAAAGATAATGTTTTGACGGTTTTGGC
ATAGTTTATGAATCGTAGAACAGTTGAATCTTGAATGTTTATTGAAGAAA
ATCCGTCAGTTTGGATTTCTCTCCACAGTGATGGATCGTAGGACAAACAA
CGCCATGTCTTGCAAACCAGAGCTAATTTGGTGACAAGTTCTTTCGATGA
TAGATAAGAAAAAATCTCAATAATGATGCTATCTGGTAGTTTattcatct
ttgatttcttcGACACTTTCTCCATTtaatatcttccttcgttttttTTG
CTGTAGTAAATACGTCTTGTTTTCATCAAcgaatatttttt
Run BLAST on NCBI

protein sequence of TCONS_00062316-protein

>TCONS_00062316-protein ID=TCONS_00062316-protein|Name=TCONS_00062316-protein|organism=Clytia hemisphaerica|type=polypeptide|length=482bp
MEKVSKKSKMNKLPDSIIIEIFSYLSSKELVTKLALVCKTWRCLSYDPSL
WREIQTDGFSSINIQDSTVLRFINYAKTVKTLSLRGCYQISNKVLRGVSI
NGSRLQNLNLENCFKITDRGIITLARACQNLRTVNTLNTLVTEHGLCYLL
QENKHLIELTSAPHTVTLKTIQILSTNCKHLEYLHVEQNEFTPNYKSNKL
NQNKLVSLTNQMIELLASNCLKLQVLILRYPITSIDDHALWRIGSQCKRI
ECVEIGQKTHTAPLSDNGVIALCTRSTNLLRLDLKETFITDFTLQVIAEC
CQSLEHLEFGNTATVSDLGVMSIMNHCHNLDSFSLRAGVHSRLTDLSIFS
IAQSPCARNLIKLSMKDWNITDFGLSVIAKNLPHLLYLSLEQCLLLTNTG
LEHSLKFFHSIHSLELTGTKCITNDKELISFARLLPDSFQSVVLQARSLI
TLPNSSVPCDSITEDGCRRFSDILPECEIIFV
Run BLAST on NCBI

transcript from alignment at scaffold_362:697057..698697

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062316 ID=TCONS_00062316|Name=TCONS_00062316|organism=Clytia hemisphaerica|type=transcript|length=1641bp|location=Sequence derived from alignment at scaffold_362:697057..698697 (Clytia hemisphaerica)
aaaaaatattcgTTGATGAAAACAAGACGTATTTACTACAGCAAaaaaaa
cgaaggaagatattaAATGGAGAAAGTGTCgaagaaatcaaagatgaatA
AACTACCAGATAGCATCATTATTGAGATTTTTTCTTATCTATCATCGAAA
GAACTTGTCACCAAATTAGCTCTGGTTTGCAAGACATGGCGTTGTTTGTC
CTACGATCCATCACTGTGGAGAGAAATCCAAACTGACGGATTTTCTTCAA
TAAACATTCAAGATTCAACTGTTCTACGATTCATAAACTATGCCAAAACC
GTCAAAACATTATCTTTACGTGGATGTTATCAAATCAGCAACAAAGTTTT
GAGAGGTGTGTCTATCAATGGATCACGCCTACAAAACCTGAATCttgaaa
attgtttcaaaatcaCTGATCGTGGAATCATCACACTAGCACGCGCGTGC
CAAAATCTACGCACGGTAAACACACTCAACACACTTGTCACGGAACACGG
TCTATGTTACTTACTACAAGAAAACAAACATTTAATTGAGTTGACCTCAG
CACCGCATACCGTGACACTCAAAACCATACAAATATTATCAACAAATTGT
AAACATCTAGAATATCTTCATGTCGAGCAAAACGAATTCACTCCAAACTA
CAAATCGAACAAACTGAATCAAAATAAACTTGTATCACTTACAAACCAAA
TGATCGAATTACTTGCATCAAACTGTTTGAAATTACAAGTTTTAATCTTA
CGTTATCCTATAACATCCATTGATGACCACGCCTTATGGAGAATTGGATC
CCAGTGTAAGAGAATCGAATGCGTAGAAATTGGACAGAAAACTCACACTG
CCCCTTTATCAGATAATGGTGTTATAGCTCTGTGTACACGAAGCACGAAT
CTGTTGCGACTAGACTTGAAGGAGACTTTTATTACTGACTTTACACTTCA
AGTTATAGCTGAATGTTGTCAATCACTGGAGCATTTAGAGTTCGGCAACA
CAGCTACTGTATCAGATTTAGGTGTTATGAGCATTATGAATCACTGCCAC
AACCTGGATAGCTTCAGTTTACGAGCTGGTGTACATAGCCGGTTAACTGA
TCTCTCTATTTTCTCTATAGCTCAATCACCGTGTGCTCGCAACCTCATTA
AACTTTCTATGAAAGATTGGAATATTACAGACTTTGGATTAAGTGTTATT
GCTAAAAATTTACCACATTTACTATACCTCTCACTTGAGCAATGTTTACT
TTTAACGAACACTGGTTTGGAACACTCACTCAAATTCTTTCATAGTATAC
ACAGTTTAGAGCTCACTGGTACAAAATGTATAACAAATGATAAAGAACTT
ATATCTTTTGCACGACTACTTCCAGACTCGTTTCAATCCGTAGTTCTGCA
AGCTCGTTCCTTGATAACATTGCCGAATTCTTCGGTACCGTGTGATTCGA
TCACCGAAGATGGCTGTCGAAGATTTAGTGACATTTTACCAGAATgtgaa
atcatttttgtataagcattttttaaatattttagaaGCATATTCATCCA
GtattatgatatttttttggaaatttttaagtTTGTATTACATATTCCCA
TCATGTTATCTTAAAGCTTGATATTATTTTGTAAATACTGT

Coding sequence (CDS) from alignment at scaffold_362:697057..698697

>TCONS_00062316 ID=TCONS_00062316|Name=TCONS_00062316|organism=Clytia hemisphaerica|type=CDS|length=1449bp|location=Sequence derived from alignment at scaffold_362:697057..698697 (Clytia hemisphaerica)
ATGGAGAAAGTGTCgaagaaatcaaagatgaatAAACTACCAGATAGCAT
CATTATTGAGATTTTTTCTTATCTATCATCGAAAGAACTTGTCACCAAAT
TAGCTCTGGTTTGCAAGACATGGCGTTGTTTGTCCTACGATCCATCACTG
TGGAGAGAAATCCAAACTGACGGATTTTCTTCAATAAACATTCAAGATTC
AACTGTTCTACGATTCATAAACTATGCCAAAACCGTCAAAACATTATCTT
TACGTGGATGTTATCAAATCAGCAACAAAGTTTTGAGAGGTGTGTCTATC
AATGGATCACGCCTACAAAACCTGAATCttgaaaattgtttcaaaatcaC
TGATCGTGGAATCATCACACTAGCACGCGCGTGCCAAAATCTACGCACGG
TAAACACACTCAACACACTTGTCACGGAACACGGTCTATGTTACTTACTA
CAAGAAAACAAACATTTAATTGAGTTGACCTCAGCACCGCATACCGTGAC
ACTCAAAACCATACAAATATTATCAACAAATTGTAAACATCTAGAATATC
TTCATGTCGAGCAAAACGAATTCACTCCAAACTACAAATCGAACAAACTG
AATCAAAATAAACTTGTATCACTTACAAACCAAATGATCGAATTACTTGC
ATCAAACTGTTTGAAATTACAAGTTTTAATCTTACGTTATCCTATAACAT
CCATTGATGACCACGCCTTATGGAGAATTGGATCCCAGTGTAAGAGAATC
GAATGCGTAGAAATTGGACAGAAAACTCACACTGCCCCTTTATCAGATAA
TGGTGTTATAGCTCTGTGTACACGAAGCACGAATCTGTTGCGACTAGACT
TGAAGGAGACTTTTATTACTGACTTTACACTTCAAGTTATAGCTGAATGT
TGTCAATCACTGGAGCATTTAGAGTTCGGCAACACAGCTACTGTATCAGA
TTTAGGTGTTATGAGCATTATGAATCACTGCCACAACCTGGATAGCTTCA
GTTTACGAGCTGGTGTACATAGCCGGTTAACTGATCTCTCTATTTTCTCT
ATAGCTCAATCACCGTGTGCTCGCAACCTCATTAAACTTTCTATGAAAGA
TTGGAATATTACAGACTTTGGATTAAGTGTTATTGCTAAAAATTTACCAC
ATTTACTATACCTCTCACTTGAGCAATGTTTACTTTTAACGAACACTGGT
TTGGAACACTCACTCAAATTCTTTCATAGTATACACAGTTTAGAGCTCAC
TGGTACAAAATGTATAACAAATGATAAAGAACTTATATCTTTTGCACGAC
TACTTCCAGACTCGTTTCAATCCGTAGTTCTGCAAGCTCGTTCCTTGATA
ACATTGCCGAATTCTTCGGTACCGTGTGATTCGATCACCGAAGATGGCTG
TCGAAGATTTAGTGACATTTTACCAGAATgtgaaatcatttttgtataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039054XLOC_039054Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062316-proteinTCONS_00062316-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062316-exon-scaffold_362-1491911889:697057..698697TCONS_00062316-exon-scaffold_362-1491911889:697057..698697Clytia hemisphaericaexon
TCONS_00062316-exon-scaffold_362-1510915933:697057..698697TCONS_00062316-exon-scaffold_362-1510915933:697057..698697Clytia hemisphaericaexon
TCONS_00062316-exon-scaffold_362-1575043694:697057..698697TCONS_00062316-exon-scaffold_362-1575043694:697057..698697Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:697057..698697 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.594599	0.821423	0.168309	0.192108	7.31688	5.67629	4.36374	4.80095	2.73494	3.15492	3.61445	2.178	3.11416	2.87474	1.91325	6.12945	3.45932	4.40351	2.15958	2.4252	1.70072	0.91134	2.49977	1.85944	1.75559	1.44812	1.39283	1.45021	0.879945	1.09264
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00062316 vs. Swiss-Prot (Human)
Match: FBXL2 (F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.446e-19
Identity = 93/342 (27.19%), Postives = 154/342 (45.03%), Query Frame = -1 
Query:  532 KLPDSIIIEIFSYLSSKELVTKLALVCKTWRCLSYDPSLWREIQTDGFSSINIQDSTVLRFINYAKT-VKTLSLRGCYQISNKVLRGVSINGSRLQNLNLENCFKITDRGIITLARACQNLRXXXXXXXXXTEHGLCYLLQENKHLIELTSAPHTVTLKTIQILSTNCKHLEYLHVEQNEFTPNYKSNKLNQNKLVSLTNQMIELLASNCLKLQVLILRYPITSIDDHALWRIGSQCKRIECVEIGQKTHTAPLSDNGVIALCTRSTNLLRLDLKE-TFITDFTLQVIAECCQSLEHLEFGNTATVSDLGVMSIMNHCHNLDSFSLRAGV---HSRLTDLSI 1542
            KLP  +++ IFS+L    L  + A + K W  L+ D S W+ I    F + +++   V          ++ LSLRGC  + +  L+  + N   +++LNL  C KITD    +L+R C  L                      KHL +LTS   ++T  +++ +S  C++LEYL++   +                 +T   IE L   C  L+ L+LR   T ++D AL  I + C   E V +  ++  + ++D GV+ +C     L  L L   + +TD +L  +   C  L+ LE    + ++D G   +  +CH L+   L   +    S L  LSI
Sbjct:   14 KLPKELLLRIFSFLDIVTLC-RCAQISKAWNILALDGSNWQRIDLFNFQT-DVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKL----------------------KHL-DLTSCV-SITNSSLKGISEGCRNLEYLNLSWCD----------------QITKDGIEALVRGCRGLKALLLR-GCTQLEDEALKHIQNYCH--ELVSLNLQS-CSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSI 309
The following BLAST results are available for this feature:
BLAST of TCONS_00062316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBXL21.446e-1927.19F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL... [more]
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