TCONS_00062310 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062310
Unique NameTCONS_00062310
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062310 ID=TCONS_00062310|Name=TCONS_00062310|organism=Clytia hemisphaerica|type=transcript|length=455bp
TGTTAAACATGGAGTTCCTCAGGGCTCTGTATTAGGACCACTACTCTTTC
TAATTTACATAAATGACCTTCCTCAAGCTATATTGAATAGCGAAACCAAC
ctttttgctgatgataccTGCCTTCTTTCATCTGACCAGGGGGTTCTGAC
TCAAATTTGAATTCACTCGAAACCAAAGTGAACTCTGATCTAGTTAAACT
TTCTTCTTGGCTTCGTGCGAATAAAATTTCTCTTAACACTGCGAAAACAG
AGGTCATTTTGTTCAGAAGCAAACATAAATCTGTACCTTACTCTATGAAT
CTTTACCTTGAAGGACACACCTTAAAATTCACAAAGCAtgtcaaatacac
gtttttttttttattagaacacctaaaatttggctgagcctggatgtgct
tatttttttagcaattttcagcctagaatgttcttaaatgcgttctttat
ttttc
Run BLAST on NCBI

transcript from alignment at scaffold_362:485291..485745

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062310 ID=TCONS_00062310|Name=TCONS_00062310|organism=Clytia hemisphaerica|type=transcript|length=455bp|location=Sequence derived from alignment at scaffold_362:485291..485745 (Clytia hemisphaerica)
gaaaaataaagaacgcatttaagaacattctaggctgaaaattgctaaaa
aaataagcacatccaggctcagccaaattttaggtgttctaataaaaaaa
aaaacgtgtatttgacaTGCTTTGTGAATTTTAAGGTGTGTCCTTCAAGG
TAAAGATTCATAGAGTAAGGTACAGATTTATGTTTGCTTCTGAACAAAAT
GACCTCTGTTTTCGCAGTGTTAAGAGAAATTTTATTCGCACGAAGCCAAG
AAGAAAGTTTAACTAGATCAGAGTTCACTTTGGTTTCGAGTGAATTCAAA
TTTGAGTCAGAACCCCCTGGTCAGATGAAAGAAGGCAggtatcatcagca
aaaagGTTGGTTTCGCTATTCAATATAGCTTGAGGAAGGTCATTTATGTA
AATTAGAAAGAGTAGTGGTCCTAATACAGAGCCCTGAGGAACTCCATGTT
TAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039049XLOC_039049Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062310-exon-scaffold_362-1491911889:485291..485745TCONS_00062310-exon-scaffold_362-1491911889:485291..485745Clytia hemisphaericaexon
TCONS_00062310-exon-scaffold_362-1510915933:485291..485745TCONS_00062310-exon-scaffold_362-1510915933:485291..485745Clytia hemisphaericaexon
TCONS_00062310-exon-scaffold_362-1575043694:485291..485745TCONS_00062310-exon-scaffold_362-1575043694:485291..485745Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:485291..485745 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.231864	1.29006	0.504093	1.04887	1.34458	1.34881	3.14876	3.96555	0.621391	1.4234	2.17784	0.934006	1.20992	0.660746	0.504567	0.367708	0.116808	0.452754	0.333978	0.491393	0.980922	2.4429	0.868084	0	4.01654	4.5356	0.913108	0.680932	1.06786	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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