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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062305 ID=TCONS_00062305|Name=TCONS_00062305|organism=Clytia hemisphaerica|type=transcript|length=841bp
GGGGAATCGACCTAAGAACATTCGACATTAAAAAACTAACAAATTTAGGA
TATTCATTGCGCTAAAAAAGCGGTTAAAAAAGCGGCTTTTCGCATTTATT
ACAGGGACAAGAGGGACTATCCTCGTGCTCATTTCTACGACGAATGTATC
GACAGTACTTTATTTCTTCGTAAATGTTCTTTTCTGGTATATTTTCCCCT
GAATGGATTTCCATTTCTTTAGCAATCAATTCCTGTTCGAAGCGATCAAT
GATCCTGGAAGCTCTTCTCAGGTTCCCATCAAATATGGATGTGCGACGAG
TACGTTGTGCGACATCTAGTGGCGGAGGTGCCGCAAAATTTGACGATCGT
CGCCGCTCGGTTGATTTATCTAGCAGTAAAGGTGCTAACTGATTATTTGA
TGAACGACGTCTCTCTGTTGTTTCCACGGTAATAGTTGCCCCTGGAGACA
ATGATGGTAACGAAGGCTCTGGTAATGGCGAAAGAGGACGTTGAACTTGT
AAATTACTCAAAGTTTTGGTTTTCTTCAAGGAAGGCATTTGATTGATAAG
ATATTTGTTCTCAATTTTAGGTAACTTATAAACGGATGAAAATTCGCCGC
TTcgctttttctttttggttgtGTGGCCATCTGTCTCCTTGGTTGAACGG
CCTTGATTTCGGCTCACTTTAgttgataaatttgtttgtACCGGAGGTTT
GAGATGGTTTGATCTGTTCCTGGTTCGTGAAGAATGATATTCTTGGTCAT
TGCTTTTGCGAAGAGATAGTAGTTCACCAACTTGATGTGTTGTTGACTGC
CTTCTTCCACTAGTCATGGTTTATATAGTTTTCTACTTTTG Run BLAST on NCBI protein sequence of TCONS_00062305-protein >TCONS_00062305-protein ID=TCONS_00062305-protein|Name=TCONS_00062305-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
MTSGRRQSTTHQVGELLSLRKSNDQEYHSSRTRNRSNHLKPPVQTNLSTK
VSRNQGRSTKETDGHTTKKKKRSGEFSSVYKLPKIENKYLINQMPSLKKT
KTLSNLQVQRPLSPLPEPSLPSLSPGATITVETTERRRSSNNQLAPLLLD
KSTERRRSSNFAAPPPLDVAQRTRRTSIFDGNLRRASRIIDRFEQELIAK
EMEIHSGENIPEKNIYEEIKYCRYIRRRNEHEDSPSCPCNKCEKPLF Run BLAST on NCBI transcript from alignment at scaffold_362:225914..226754 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062305 ID=TCONS_00062305|Name=TCONS_00062305|organism=Clytia hemisphaerica|type=transcript|length=841bp|location=Sequence derived from alignment at scaffold_362:225914..226754 (Clytia hemisphaerica)
CAAAAGTAGAAAACTATATAAACCATGACTAGTGGAAGAAGGCAGTCAAC
AACACATCAAGTTGGTGAACTACTATCTCTTCGCAAAAGCAATGACCAAG
AATATCATTCTTCACGAACCAGGAACAGATCAAACCATCTCAAACCTCCG
GTacaaacaaatttatcaacTAAAGTGAGCCGAAATCAAGGCCGTTCAAC
CAAGGAGACAGATGGCCACacaaccaaaaagaaaaagcgAAGCGGCGAAT
TTTCATCCGTTTATAAGTTACCTAAAATTGAGAACAAATATCTTATCAAT
CAAATGCCTTCCTTGAAGAAAACCAAAACTTTGAGTAATTTACAAGTTCA
ACGTCCTCTTTCGCCATTACCAGAGCCTTCGTTACCATCATTGTCTCCAG
GGGCAACTATTACCGTGGAAACAACAGAGAGACGTCGTTCATCAAATAAT
CAGTTAGCACCTTTACTGCTAGATAAATCAACCGAGCGGCGACGATCGTC
AAATTTTGCGGCACCTCCGCCACTAGATGTCGCACAACGTACTCGTCGCA
CATCCATATTTGATGGGAACCTGAGAAGAGCTTCCAGGATCATTGATCGC
TTCGAACAGGAATTGATTGCTAAAGAAATGGAAATCCATTCAGGGGAAAA
TATACCAGAAAAGAACATTTACGAAGAAATAAAGTACTGTCGATACATTC
GTCGTAGAAATGAGCACGAGGATAGTCCCTCTTGTCCCTGTAATAAATGC
GAAAAGCCGCTTTTTTAACCGCTTTTTTAGCGCAATGAATATCCTAAATT
TGTTAGTTTTTTAATGTCGAATGTTCTTAGGTCGATTCCCC Coding sequence (CDS) from alignment at scaffold_362:225914..226754 >TCONS_00062305 ID=TCONS_00062305|Name=TCONS_00062305|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at scaffold_362:225914..226754 (Clytia hemisphaerica)
ATGACTAGTGGAAGAAGGCAGTCAACAACACATCAAGTTGGTGAACTACT
ATCTCTTCGCAAAAGCAATGACCAAGAATATCATTCTTCACGAACCAGGA
ACAGATCAAACCATCTCAAACCTCCGGTacaaacaaatttatcaacTAAA
GTGAGCCGAAATCAAGGCCGTTCAACCAAGGAGACAGATGGCCACacaac
caaaaagaaaaagcgAAGCGGCGAATTTTCATCCGTTTATAAGTTACCTA
AAATTGAGAACAAATATCTTATCAATCAAATGCCTTCCTTGAAGAAAACC
AAAACTTTGAGTAATTTACAAGTTCAACGTCCTCTTTCGCCATTACCAGA
GCCTTCGTTACCATCATTGTCTCCAGGGGCAACTATTACCGTGGAAACAA
CAGAGAGACGTCGTTCATCAAATAATCAGTTAGCACCTTTACTGCTAGAT
AAATCAACCGAGCGGCGACGATCGTCAAATTTTGCGGCACCTCCGCCACT
AGATGTCGCACAACGTACTCGTCGCACATCCATATTTGATGGGAACCTGA
GAAGAGCTTCCAGGATCATTGATCGCTTCGAACAGGAATTGATTGCTAAA
GAAATGGAAATCCATTCAGGGGAAAATATACCAGAAAAGAACATTTACGA
AGAAATAAAGTACTGTCGATACATTCGTCGTAGAAATGAGCACGAGGATA
GTCCCTCTTGTCCCTGTAATAAATGCGAAAAGCCGCTTTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062305-exon-scaffold_362-1491911889:225914..226754 | TCONS_00062305-exon-scaffold_362-1491911889:225914..226754 | Clytia hemisphaerica | exon |
| TCONS_00062305-exon-scaffold_362-1510915933:225914..226754 | TCONS_00062305-exon-scaffold_362-1510915933:225914..226754 | Clytia hemisphaerica | exon |
| TCONS_00062305-exon-scaffold_362-1575043694:225914..226754 | TCONS_00062305-exon-scaffold_362-1575043694:225914..226754 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:225914..226754 . |
Blast
The following BLAST results are available for this feature:
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