TCONS_00062303 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062303
Unique NameTCONS_00062303
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length478

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062303 ID=TCONS_00062303|Name=TCONS_00062303|organism=Clytia hemisphaerica|type=transcript|length=478bp
CATGCTCTTCACGTTCTTCATCACAGCAACCATCAGTAGTTGGAGAATAA
AATGTTCTGCCACTCCTTGTGTATTCATGACAAAAAATGAAGCTCAAATG
ACAGGTAGATCGTTCAAAGCACGTGGAGAACCAATTTCGTTGCTTGATTC
AGAATATGCAGATGATACTGCAATCGTATTCGATAATCGTCATGATGCTG
TTGTTGAGACGCAATCACTAGTTCACCACTTTTCTCGCTTTGGTACAGAA
ATCCACACCGGAGTAACAGAGCCTCGTCAAAGCTCAAAAACTGAATTGCT
CTTCTGTGCCAAGGTACATTCTCTTTACGAATCGCGAGAAGATTACGATA
AAGCTGATTTCTCTGACATCATTTTAACCAATAACCGATACATCCCAATC
GTTTGCATATTTAGGAAGTATCATTACAACAAATGGTACGGATGACCTCG
AGATTGAAACACGTTTTCGTAAAGCGGG
Run BLAST on NCBI

protein sequence of TCONS_00062303-protein

>TCONS_00062303-protein ID=TCONS_00062303-protein|Name=TCONS_00062303-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MLFTFFITATISSWRIKCSATPCVFMTKNEAQMTGRSFKARGEPISLLDS
EYADDTAIVFDNRHDAVVETQSLVHHFSRFGTEIHTGVTEPRQSSKTELL
FCAKVHSLYESREDYDKADFSDIILTNNRYIPIVCIFRKYHYNKWYG
Run BLAST on NCBI

transcript from alignment at scaffold_362:197811..198288

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062303 ID=TCONS_00062303|Name=TCONS_00062303|organism=Clytia hemisphaerica|type=transcript|length=478bp|location=Sequence derived from alignment at scaffold_362:197811..198288 (Clytia hemisphaerica)
CCCGCTTTACGAAAACGTGTTTCAATCTCGAGGTCATCCGTACCATTTGT
TGTAATGATACTTCCTAAATATGCAAACGATTGGGATGTATCGGTTATTG
GTTAAAATGATGTCAGAGAAATCAGCTTTATCGTAATCTTCTCGCGATTC
GTAAAGAGAATGTACCTTGGCACAGAAGAGCAATTCAGTTTTTGAGCTTT
GACGAGGCTCTGTTACTCCGGTGTGGATTTCTGTACCAAAGCGAGAAAAG
TGGTGAACTAGTGATTGCGTCTCAACAACAGCATCATGACGATTATCGAA
TACGATTGCAGTATCATCTGCATATTCTGAATCAAGCAACGAAATTGGTT
CTCCACGTGCTTTGAACGATCTACCTGTCATTTGAGCTTCATTTTTTGTC
ATGAATACACAAGGAGTGGCAGAACATTTTATTCTCCAACTACTGATGGT
TGCTGTGATGAAGAACGTGAAGAGCATG

Coding sequence (CDS) from alignment at scaffold_362:197811..198288

>TCONS_00062303 ID=TCONS_00062303|Name=TCONS_00062303|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at scaffold_362:197811..198288 (Clytia hemisphaerica)
TCATCCGTACCATTTGTTGTAATGATACTTCCTAAATATGCAAACGATTG
GGATGTATCGGTTATTGGTTAAAATGATGTCAGAGAAATCAGCTTTATCG
TAATCTTCTCGCGATTCGTAAAGAGAATGTACCTTGGCACAGAAGAGCAA
TTCAGTTTTTGAGCTTTGACGAGGCTCTGTTACTCCGGTGTGGATTTCTG
TACCAAAGCGAGAAAAGTGGTGAACTAGTGATTGCGTCTCAACAACAGCA
TCATGACGATTATCGAATACGATTGCAGTATCATCTGCATATTCTGAATC
AAGCAACGAAATTGGTTCTCCACGTGCTTTGAACGATCTACCTGTCATTT
GAGCTTCATTTTTTGTCATGAATACACAAGGAGTGGCAGAACATTTTATT
CTCCAACTACTGATGGTTGCTGTGATGAAGAACGTGAAGAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039042XLOC_039042Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062303-proteinTCONS_00062303-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062303-exon-scaffold_362-1491911889:197811..198288TCONS_00062303-exon-scaffold_362-1491911889:197811..198288Clytia hemisphaericaexon
TCONS_00062303-exon-scaffold_362-1510915933:197811..198288TCONS_00062303-exon-scaffold_362-1510915933:197811..198288Clytia hemisphaericaexon
TCONS_00062303-exon-scaffold_362-1575043694:197811..198288TCONS_00062303-exon-scaffold_362-1575043694:197811..198288Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:197811..198288 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.520263	1.87351	1.4933	1.70849	1.06715	1.26491	2.20431	1.11119	0.889113	3.0286	1.87068	1.66889	1.31571	1.00201	0.674011	1.04479	0.0990075	1.01479	1.82259	2.49404	1.6188	0.93297	0.907318	1.37481	3.82325	4.63832	1.44675	1.40065	2.28637	1.78972
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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