TCONS_00062301 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062301
Unique NameTCONS_00062301
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length738

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062301 ID=TCONS_00062301|Name=TCONS_00062301|organism=Clytia hemisphaerica|type=transcript|length=738bp
CAAATATCATATCAATGTAAAATTTCACACAGTTGTGATGGAATTTTCCT
GTTTGCAAAGAATCATGTCCAGGCTTGCTTAGATCCTTCGtgcaacaaag
aaaattgaaatcgaattttatatattttatacgcTTAATCTAATAATTAA
TTTCAATCAAATCAGATCCATAGACATCTTCGTCAACATTACAAAACATC
CaccaacaaaaaagttttttttacgaAGCAAAATCCACAGTTAGTTGTAT
GTACGGTAATTCATAAAACCATCTTCTCAGCTCCAATTACCTTCCCAAAA
AGTACAGATTGATCCCATGTTATCTTAGTTTATCTCTCATTATTTCAGTC
TGTCGGTTACATCTAGTTAAAAATTGAAGTCTTTAAAACCACATACAGCC
CATATCCTTCACAGATCTTAAAATTCAATGATGATGTACGATGCTCGATT
GCGCTTTATCACTTTGTCCGCCATGTTCGCTATTCTGTTCGAGGCGTTTA
CTCACAATTGATTGATATTCTAAACTCTCTTTGACACACGTAGCAAGAAA
GATATCGTAGAAAGCATCCGGGCGGATTGGGCGGCATCGACACCTCCTTG
TAACGTCATTACTTTCTAATGTCAATGATGAATATCGGGTGTGCTGATAT
ACTTCGTGTTTTTCCGATTGTAACATTTTTCTGTTATTTCTCTCTCGTTG
TTATCTATGATTTTCACTTAAATTTGTCAACATATAAT
Run BLAST on NCBI

transcript from alignment at scaffold_362:160333..161070

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062301 ID=TCONS_00062301|Name=TCONS_00062301|organism=Clytia hemisphaerica|type=transcript|length=738bp|location=Sequence derived from alignment at scaffold_362:160333..161070 (Clytia hemisphaerica)
ATTATATGTTGACAAATTTAAGTGAAAATCATAGATAACAACGAGAGAGA
AATAACAGAAAAATGTTACAATCGGAAAAACACGAAGTATATCAGCACAC
CCGATATTCATCATTGACATTAGAAAGTAATGACGTTACAAGGAGGTGTC
GATGCCGCCCAATCCGCCCGGATGCTTTCTACGATATCTTTCTTGCTACG
TGTGTCAAAGAGAGTTTAGAATATCAATCAATTGTGAGTAAACGCCTCGA
ACAGAATAGCGAACATGGCGGACAAAGTGATAAAGCGCAATCGAGCATCG
TACATCATCATTGAATTTTAAGATCTGTGAAGGATATGGGCTGTATGTGG
TTTTAAAGACTTCAATTTTTAACTAGATGTAACCGACAGACTGAAATAAT
GAGAGATAAACTAAGATAACATGGGATCAATCTGTACTTTTTGGGAAGGT
AATTGGAGCTGAGAAGATGGTTTTATGAATTACCGTACATACAACTAACT
GTGGATTTTGCTtcgtaaaaaaaacttttttgttggtGGATGTTTTGTAA
TGTTGACGAAGATGTCTATGGATCTGATTTGATTGAAATTAATTATTAGA
TTAAgcgtataaaatatataaaattcgatttcaattttctttgttgcaCG
AAGGATCTAAGCAAGCCTGGACATGATTCTTTGCAAACAGGAAAATTCCA
TCACAACTGTGTGAAATTTTACATTGATATGATATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039040XLOC_039040Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062301-exon-scaffold_362-1491911889:160333..161070TCONS_00062301-exon-scaffold_362-1491911889:160333..161070Clytia hemisphaericaexon
TCONS_00062301-exon-scaffold_362-1510915933:160333..161070TCONS_00062301-exon-scaffold_362-1510915933:160333..161070Clytia hemisphaericaexon
TCONS_00062301-exon-scaffold_362-1575043694:160333..161070TCONS_00062301-exon-scaffold_362-1575043694:160333..161070Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:160333..161070 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.201197	0.326998	0.0759352	0.148581	0.633093	0.571747	9.82948	11.7853	7.12088	4.97021	3.19349	3.66256	0.535239	0.833777	0	0.0817359	1.10761	0.619236	1.21197	2.61108	1.03749	1.42326	0.845858	1.3982	1.2961	1.09247	0.0919604	0.196285	0.595501	0.379201
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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