TCONS_00062295 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062295
Unique NameTCONS_00062295
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length549

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062295 ID=TCONS_00062295|Name=TCONS_00062295|organism=Clytia hemisphaerica|type=transcript|length=549bp
GTGAAGTTTGGTAGCTTTCTGTTTGGGAAGATTCGATTGAGGAATGAGAA
TCTAGCAAGTTTGATACTTCTTGAGATGAATAGAgagaattgatttttga
agggGAGGCTTCTTCGTGTGAGACATGCATTGATGTCATTTGTGATTCAT
GAGAGATATCGGCCACGGTATAACTTACTATTTCACTAACAAAGGATGAT
TTTATAGGACTAATTGGTACCGTTCCCTTGCTAAACGATGCAGATAAATA
TTGTTCAGTGattgaaaatgtttggaaagTCTCTAATGAAGATTGTGAAT
TTTGAACTGAGAGACTTGGCAAAATAGTAGTCGCAATAGCTGTTGTAGCT
TGACCGGAAATGGaagattttgctatttttgttgTCATAATATCTAAGTT
GGATTGAATATCGGATATTATGCTAGATTGAAACGAATTGAAATTCGTAA
AATATTGTGTTGACTTTTTAACAAGCAGCTGAGTTGATGGTTCAAGTGAT
TCGGTCAAATATTGATTGGACTGTGTTTGTTGAGTGGTAGTCGATACTA
Run BLAST on NCBI

protein sequence of TCONS_00062295-protein

>TCONS_00062295-protein ID=TCONS_00062295-protein|Name=TCONS_00062295-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
VSTTTQQTQSNQYLTESLEPSTQLLVKKSTQYFTNFNSFQSSIISDIQSN
LDIMTTKIAKSSISGQATTAIATTILPSLSVQNSQSSLETFQTFSITEQY
LSASFSKGTVPISPIKSSFVSEIVSYTVADISHESQMTSMHVSHEEASPS
KINSLYSSQEVSNLLDSHSSIESSQTESYQTS
Run BLAST on NCBI

transcript from alignment at scaffold_362:16276..16824

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062295 ID=TCONS_00062295|Name=TCONS_00062295|organism=Clytia hemisphaerica|type=transcript|length=549bp|location=Sequence derived from alignment at scaffold_362:16276..16824 (Clytia hemisphaerica)
TAGTATCGACTACCACTCAACAAACACAGTCCAATCAATATTTGACCGAA
TCACTTGAACCATCAACTCAGCTGCTTGTTAAAAAGTCAACACAATATTT
TACGAATTTCAATTCGTTTCAATCTAGCATAATATCCGATATTCAATCCA
ACTTAGATATTATGAcaacaaaaatagcaaaatcttCCATTTCCGGTCAA
GCTACAACAGCTATTGCGACTACTATTTTGCCAAGTCTCTCAGTTCAAAA
TTCACAATCTTCATTAGAGActttccaaacattttcaatCACTGAACAAT
ATTTATCTGCATCGTTTAGCAAGGGAACGGTACCAATTAGTCCTATAAAA
TCATCCTTTGTTAGTGAAATAGTAAGTTATACCGTGGCCGATATCTCTCA
TGAATCACAAATGACATCAATGCATGTCTCACACGAAGAAGCCTCccctt
caaaaatcaattctcTCTATTCATCTCAAGAAGTATCAAACTTGCTAGAT
TCTCATTCCTCAATCGAATCTTCCCAAACAGAAAGCTACCAAACTTCAC

Coding sequence (CDS) from alignment at scaffold_362:16276..16824

>TCONS_00062295 ID=TCONS_00062295|Name=TCONS_00062295|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at scaffold_362:16276..16824 (Clytia hemisphaerica)
GTATCGACTACCACTCAACAAACACAGTCCAATCAATATTTGACCGAATC
ACTTGAACCATCAACTCAGCTGCTTGTTAAAAAGTCAACACAATATTTTA
CGAATTTCAATTCGTTTCAATCTAGCATAATATCCGATATTCAATCCAAC
TTAGATATTATGAcaacaaaaatagcaaaatcttCCATTTCCGGTCAAGC
TACAACAGCTATTGCGACTACTATTTTGCCAAGTCTCTCAGTTCAAAATT
CACAATCTTCATTAGAGActttccaaacattttcaatCACTGAACAATAT
TTATCTGCATCGTTTAGCAAGGGAACGGTACCAATTAGTCCTATAAAATC
ATCCTTTGTTAGTGAAATAGTAAGTTATACCGTGGCCGATATCTCTCATG
AATCACAAATGACATCAATGCATGTCTCACACGAAGAAGCCTCcccttca
aaaatcaattctcTCTATTCATCTCAAGAAGTATCAAACTTGCTAGATTC
TCATTCCTCAATCGAATCTTCCCAAACAGAAAGCTACCAAACTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039034XLOC_039034Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062295-proteinTCONS_00062295-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062295-exon-scaffold_362-1491911889:16276..16824TCONS_00062295-exon-scaffold_362-1491911889:16276..16824Clytia hemisphaericaexon
TCONS_00062295-exon-scaffold_362-1510915933:16276..16824TCONS_00062295-exon-scaffold_362-1510915933:16276..16824Clytia hemisphaericaexon
TCONS_00062295-exon-scaffold_362-1575043694:16276..16824TCONS_00062295-exon-scaffold_362-1575043694:16276..16824Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:16276..16824 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.140717	0.111196	0.134154	0	0	0	0	0	0.346987	0	0	0.0635857	0	0.0802882	0	0.464289	0.201776	0.295258	0	0.326314	0	0.599915	0	0	0	0.117998
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062295 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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