TCONS_00062259 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062259
Unique NameTCONS_00062259
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length780

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062259 ID=TCONS_00062259|Name=TCONS_00062259|organism=Clytia hemisphaerica|type=transcript|length=780bp
GCATAGTATAAATAGAGGAGTGGAAAGCTTGGAGAATCATTCAAACTCAA
ACAGTCAACCAataatcaacaacaacaacaacaacaaggatTTCAGCACA
AAGAGTAGCAACAAAATGGAAGGCACACTAAAGGTATTAATGTTGGTCAT
GGCCGTCGCCAATCTTTTCCATTGTTCACCAGTCGTCGAGAAAGTCATCA
AACAGAAAGAAACAGGCTCCGTCATGCTCCCAAGTGAAGAAATCAAAGTC
TTGTCCGACTTAACAAAATATTTCAGTACTTTTACTGAAGATCTTCTCAG
CTTCCGCAATGGTCACATGACGCAAACAGAATTGAAAGgcaaatatttga
agaaaaccAAACCTTTTCCAAAACGTTTAATGGGTTTGGTAAATGCAATC
CATTCTTATTATTTGAAGAATTTGGATGAAGTTGCACCACCAGTGATCAC
TGAAAACAAAACATCAAGCAACCAAACATCTGTCAGTGGCGAGAAGATGA
AGTCATTATCTTGTTATGATCAATACTGTATTAGTGGCCTAGACTGTGTT
TCTTTTACATTCAACAACTATGTATGCCCACCCAACCCTAATGCTGTACT
TTGTGAAACTGATTGGCAGTACAGATGCTGAGGTCCAAACATTGCAGCTT
ACCTACGgaCAATTTTGtgtacatttttttattcttgaTGTAGTTTTTTG
TGTATTGTAAAATGTATAAACTCTCTTTTTTATATAGtaatcttgaaaaa
atatatcattGCGGTGCTAGTTTACCGAAG
Run BLAST on NCBI

protein sequence of TCONS_00062259-protein

>TCONS_00062259-protein ID=TCONS_00062259-protein|Name=TCONS_00062259-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
HSINRGVESLENHSNSNSQPIINNNNNNKDFSTKSSNKMEGTLKVLMLVM
AVANLFHCSPVVEKVIKQKETGSVMLPSEEIKVLSDLTKYFSTFTEDLLS
FRNGHMTQTELKGKYLKKTKPFPKRLMGLVNAIHSYYLKNLDEVAPPVIT
ENKTSSNQTSVSGEKMKSLSCYDQYCISGLDCVSFTFNNYVCPPNPNAVL
CETDWQYRC
Run BLAST on NCBI

transcript from alignment at scaffold_362:530032..531323-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062259 ID=TCONS_00062259|Name=TCONS_00062259|organism=Clytia hemisphaerica|type=transcript|length=1292bp|location=Sequence derived from alignment at scaffold_362:530032..531323- (Clytia hemisphaerica)
GCATAGTATAAATAGAGGAGTGGAAAGCTTGGAGAATCATTCAAACTCAA
ACAGTCAACCAATAATCAACAACAACAACAACAACAAGGATTTCAGCACA
AAGAGTAGCAACAAAATGGAAGGCACACTAAAGGTGAGTAACATGGGGAT
AACTTACGACTTAGGTAGTAACCAGTCCCGCCCATCCTCGTAACTATTCC
CCAGACTTTTGGTTACATGGATTTCATAAGAACCAATTAAATCAAAGCCC
TAAGTTCTTCTAAATTGCGTTTATATGTTCCAAATTCGAGTTTTGTTGTT
TTTTTTGTTTTTAATTGTTTGGGTGATACCTTTGATAAATTAGTTATAAA
AGGGTTTGCAAAGCATTTCAAAAATAAGCATGCTGTTTATAAAGTTGATA
TAAAGTTAAAGTATAAAGTTTTCATCAATTTCCAGGTATTAATGTTGGTC
ATGGCCGTCGCCAATCTTTTCCATTGTTCACCAGTCGTCGAGAAAGTCAT
CAAACAGAAAGAAACAGGCTCCGTCATGCTCCCAAGTGAAGAAATCAAAG
TCTTGTCCGACTTAACAAAATATTTCAGTACTTTTACTGAAGATCTTCTC
AGCTTCCGCAATGGTCACATGACGCAAACAGAATTGAAAGGCAAATATTT
GAAGAAAACCAAACCTTTTCCAAAACGTTTAATGGGTTTGGTAAATGCAA
TCCATTCTTATTATTTGAAGAATTTGGATGAAGTTGCACCACCAGTGATC
ACTGAAAACAAAACATCAAGCAACCAAACATCTGTCAGTGGCGAGAAGAT
GAAGTCATTATCTTGTTATGATCAATACTGTATTAGTGGCCTAGACTGTG
TTTCTTTTACATTCAACAACTATGTATGCCCACCCAACCCTAATGCTGTA
CTTTGTGAAACTGATTGGCAGTACAGATGCTGAGGTCCAAACATTGCAGC
TTACCTACGGTAAATATGATGAGTATCATTCTTTATAATTTTTGTTGATC
TGATGAACTTTTCTTGTATTTTTAGTATGTAAGGGTCAGAAGTGATTTTA
TTAACCATTATAATGAAACATCATACGACTGTAATATTCATTTATTGGAT
TCGTGCCACTTTTTACGGGCAATCGTATAATAATCGTTCTTATAAAATTT
GATTTTTTTTTCTTTCTAGGACAATTTTGTGTACATTTTTTTATTCTTGA
TGTAGTTTTTTGTGTATTGTAAAATGTATAAACTCTCTTTTTTATATAGT
AATCTTGAAAAAATATATCATTGCGGTGCTAGTTTACCGAAG

Coding sequence (CDS) from alignment at scaffold_362:530032..531323-

>TCONS_00062259 ID=TCONS_00062259|Name=TCONS_00062259|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at scaffold_362:530032..531323- (Clytia hemisphaerica)
GTATTAATGTTGGTCATGGCCGTCGCCAATCTTTTCCATTGTTCACCAGT
CGTCGAGAAAGTCATCAAACAGAAAGAAACAGGCTCCGTCATGCTCCCAA
GTGAAGAAATCAAAGTCTTGTCCGACTTAACAAAATATTTCAGTACTTTT
ACTGAAGATCTTCTCAGCTTCCGCAATGGTCACATGACGCAAACAGAATT
GAAAGGCAAATATTTGAAGAAAACCAAACCTTTTCCAAAACGTTTAATGG
GTTTGGTAAATGCAATCCATTCTTATTATTTGAAGAATTTGGATGAAGTT
GCACCACCAGTGATCACTGAAAACAAAACATCAAGCAACCAAACATCTGT
CAGTGGCGAGAAGATGAAGTCATTATCTTGTTATGATCAATACTGTATTA
GTGGCCTAGACTGTGTTTCTTTTACATTCAACAACTATGTATGCCCACCC
AACCCTAATGCTGTACTTTGTGAAACTGATTGGCAGTACAGATGCTGACA
TAGTATAAATAGAGGAGTGGAAAGCTTGGAGAATCATTCAAACTCAAACA
GTCAACCAATAATCAACAACAACAACAACAACAAGGATTTCAGCACAAAG
AGTAGCAACAAAATGGAAGGCACACTAAAGGTATTAATGTTGGTCATGGC
CGTCGCCAATCTTTTCCATTGTTCACCAGTCGTCGAGAAAGTCATCAAAC
AGAAAGAAACAGGCTCCGTCATGCTCCCAAGTGAAGAAATCAAAGTCTTG
TCCGACTTAACAAAATATTTCAGTACTTTTACTGAAGATCTTCTCAGCTT
CCGCAATGGTCACATGACGCAAACAGAATTGAAAGGCAAATATTTGAAGA
AAACCAAACCTTTTCCAAAACGTTTAATGGGTTTGGTAAATGCAATCCAT
TCTTATTATTTGAAGAATTTGGATGAAGTTGCACCACCAGTGATCACTGA
AAACAAAACATCAAGCAACCAAACATCTGTCAGTGGCGAGAAGATGAAGT
CATTATCTTGTTATGATCAATACTGTATTAGTGGCCTAGACTGTGTTTCT
TTTACATTCAACAACTATGTATGCCCACCCAACCCTAATGCTGTACTTTG
TGAAACTGATTGGCAGTACAGATGCTGACATAGTATAAATAGAGGAGTGG
AAAGCTTGGAGAATCATTCAAACTCAAACAGTCAACCAATAATCAACAAC
AACAACAACAACAAGGATTTCAGCACAAAGAGTAGCAACAAAATGGAAGG
CACACTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039022XLOC_039022Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062259-proteinTCONS_00062259-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062259-exon-scaffold_362-1575043694:531191..531323TCONS_00062259-exon-scaffold_362-1575043694:531191..531323Clytia hemisphaericaexon
TCONS_00062259-exon-scaffold_362-1575043694:530365..530888TCONS_00062259-exon-scaffold_362-1575043694:530365..530888Clytia hemisphaericaexon
TCONS_00062259-exon-scaffold_362-1575043694:530032..530154TCONS_00062259-exon-scaffold_362-1575043694:530032..530154Clytia hemisphaericaexon
TCONS_00062259-exon-scaffold_362-1510915933:531191..531323TCONS_00062259-exon-scaffold_362-1510915933:531191..531323Clytia hemisphaericaexon
TCONS_00062259-exon-scaffold_362-1510915933:530365..530888TCONS_00062259-exon-scaffold_362-1510915933:530365..530888Clytia hemisphaericaexon
TCONS_00062259-exon-scaffold_362-1510915933:530032..530154TCONS_00062259-exon-scaffold_362-1510915933:530032..530154Clytia hemisphaericaexon
TCONS_00062259-exon-scaffold_362-1491911889:531191..531323TCONS_00062259-exon-scaffold_362-1491911889:531191..531323Clytia hemisphaericaexon
TCONS_00062259-exon-scaffold_362-1491911889:530365..530888TCONS_00062259-exon-scaffold_362-1491911889:530365..530888Clytia hemisphaericaexon
TCONS_00062259-exon-scaffold_362-1491911889:530032..530154TCONS_00062259-exon-scaffold_362-1491911889:530032..530154Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:530032..531323 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.149117	0.253245	0.76413	0.119124	0.239644	0	0.052358	0.129708	0	0	7.69516	2.35329	167.716	236.934	2.21633	0.967587	0.0369758	0.0386925	0.120147	0	0.182362	0.388605	0.133418	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062259 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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