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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062256 ID=TCONS_00062256|Name=TCONS_00062256|organism=Clytia hemisphaerica|type=transcript|length=2133bp
AATTTGTAGTATAATTAAAAACACATCATGATTCGTTTCCACAAAGAGCA
CGGTCAAAACATTCGACTTTCAGAGGATTGCACTGTGGCTTCTAGAACAC
AAAGTTTTGCAAATGCTTTAGTATTTAGTCAAAGACCTCTTGAAGAGAGT
GAAGTGTTTATGGTTGAAATTACAGAACATGAACGTGGATGGGCCGGCAA
TTTACGATGCGactactctaaatcgacaatatcatgcaaaatatggagca
cttaaaattgGTATAACATTGCATAACCCGGCTGATATTGTAATACCGCA
ATACTTGTTACCAGACTTGTATCAACTTGGTAGATCATGTGTCTTCTCCA
TAAAACCATGTATGTTAGATCCATTTAGTGATATGGAGCTATCAGAGAAA
AACGAGGAAGATGATTTCCATTGCAAGTATTTTGATTCTATAACCAATTG
TAAAACAACACATAATGTCCATCCAGAACTGTTGGTGAATGAAGATTATA
TTGGTGTTAAACCATGTGATAGAGGTAGCCGCATTGGATTTTTCATATCA
CCAGGCAgagaattatttttcattatcaATGGGATACAATATGGACCTTG
TGCAGGACAAATTCCAATAAATGGTCCAGTTTATGCGGCTCTTGATTTGT
ATGGGATGacaagtcaaataaaagtcataAATTGCCATGTAGCACGACTG
AAGACTTTGAGTATGGACTCATTGTCTTCAAATCATTCACGTAAAACAAT
ATCCGAACAAAATCTACCGaaacttttaaagaaagaaCTTTTGCTGATGT
ATGGATTAGTCGAGGATGAGGAAGATAAATTATCGTTGTCTTATTCCTCA
TCTAAACGACCAAGGCTGATGTCAAAATTATGCTGGGACCAAGGATAAAT
GTCTTTTAGATAATGCAATGATTATATAATCCTTAATTTATCCATATTTT
AAGTGCATTTTATACTACTATTTTATTTATTGTACATTTTCGTGTTTTAG
AGTTTCAAGTTTGAATTTTGAGAACTCATAGAAAATACACGggctgcaaa
attatatcaatgcagtcaaaacatgtgattactcgaaaaagttcacgtga
tcttattcccatgttacttgctttacaacttacagctgataactttatta
gtgtcaataaatttgaaccaatcagaaataaatgtcatgtaacaagcaca
taaaaatttcgagtgaaagcgtgatttgtcttcagactttaattttgcaa
ccttcTCTGTATTGATATACATATATGCCTATCAATTAGAAGTGATTTAT
ACAAGCATGCAGGTCTTCatagggctacttagactacacaatatattgac
gaacaatatttgacaatatcgttttcggaccgtaatgtacgatgTAAATA
ACAGGTGCTCTATTATGAAAAGGAATTTTccttctgtaaacaatccccct
atattgttggaaaattgcaaatcgagctgacaatatattgcagaAACCTT
TCAATATATTGTCTGCACTctagcaatatatcatcaatatattgcctgac
aatatattgtgtagtgtatgtaacCCTTATAATATACGTTTGTCCGAGCA
GCAAGAGTGTACGTCCCACACCTCCAATCAACACTCTGAAACGGTCCAGA
AAATGTCCCCTTTGGAGCATGATTTCAAATTAGGAGAGACATTTACGGGG
AGGTAAAGATAAATGATTTTCTCTCTTGCGtcgttttttaatttcattat
agACTTGTTATTTCGGAAATCCTCGgactaaatcttttttttcgattaga
aaatgaaataattatgtTATTTTGATAGAATAANGAAATCCTCGGACTAA
ATCTTTTTTTCgattagaaaatgaaataattatgtTATTTTGATAGATGT
ATAAATTTTTTAGCCAACTGGCTCAatgttatattttacaaaatgtttTG
TTGGAAGTCATACAGTATGCATATTTATCACATATTTTGTTGGGTCGTAC
ATATAGTTGAccatagaaaattttcaatgcATTTTTACTTTATTATGCAA
AAGTTTTAAAGACAAACACTGTCATGTCAATCCGCAGTTGTTGATTTATA
TCTGGAGCTTGCCCAAAATTGTGTTGATGTTGG Run BLAST on NCBI protein sequence of TCONS_00062256-protein >TCONS_00062256-protein ID=TCONS_00062256-protein|Name=TCONS_00062256-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
MNVDGPAIYDATTLNRQYHAKYGALKIGITLHNPADIVIPQYLLPDLYQL
GRSCVFSIKPCMLDPFSDMELSEKNEEDDFHCKYFDSITNCKTTHNVHPE
LLVNEDYIGVKPCDRGSRIGFFISPGRELFFIINGIQYGPCAGQIPINGP
VYAALDLYGMTSQIKVINCHVARLKTLSMDSLSSNHSRKTISEQNLPKLL
KKELLLMYGLVEDEEDKLSLSYSSSKRPRLMSKLCWDQG Run BLAST on NCBI transcript from alignment at scaffold_362:505016..508672- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062256 ID=TCONS_00062256|Name=TCONS_00062256|organism=Clytia hemisphaerica|type=transcript|length=3657bp|location=Sequence derived from alignment at scaffold_362:505016..508672- (Clytia hemisphaerica)
AATTTGTAGTATAATTAAAAACACATCATGATTCGTTTCCACAAAGAGCA
CGGTCAAAACATTCGACTTTCAGAGGATTGCACTGTGGCTTCTAGAACAC
AAAGTTTTGCAAATGCTTTAGTATTTAGTCAAAGACCTCTTGAAGAGAGT
GAAGTGTTTATGGTTGAAATTACAGAACATGAACGTGGATGGGCCGGCAA
TTTACGATGCGGTATGAAACAATAAATCTTTTTTCTAAAAACAATGATAT
TTTGGAAAATTTATCGGTCCTTTTTACGCCNAACAAATCTTTTTTCTAAA
AACAATGATATTTTGGAAAACTTATCGCAATCGGTCCTTTTTACGCCGGC
CTTAATTACACCAAAGCTCTTTTTTCCATTTTCAGCCCGGTTCTAATTTA
ATTACGATCCCTTACATTGTCCCTTATTACTCTAGCAAAAAAAAATTAGT
GTCTATTATAGGGCTGATGTAAAAAAGGACCGATAAGGTACTGCAGTGAC
ACGATCTGTATGATTAGTGAAAGACTACTGTATTTTCTGTTATATTATAT
TGTTAATGTCTTCTTCTTTAGTTATATCCAACATAACATCATCTTTTGGG
GGAAAGATATGTAGACTAATCTTGTATTATCTATCTAACTTTTGCCAGTT
CTTTGCGTTTGCCCCTCTCTTCGTTTGAATTAGAATGTGTTTTCGTTTAC
TAGAGTTTTTTTTTATCTAATTGTATGATTAGCTTTTCAACCTGGATAGT
TTCAAGGGGATGTGAAGTACTTTTTTTCAATTCAGTAAATAATTTTTCTA
TACCTCAAATACACGTTTTTTTTTTATTAGAACACCTAAAATTTGGCTGA
GCCTGGATGTGCTTATTTTTTTAGCAATTTTCAGCCTAAAATGTTCTTAA
ATGCGTTCTTAATTTTTCAGACTACTCTAAATCGACAATATCATGCAAAA
TATGGAGCACTTAAAATTGGTAAAATTTGGACAATATTTGACTCTCGATT
TTTGAAAATCCATCACTAATTTCAGTTAAAACTGCTTGAAAAGAGGAAAC
AATTGTAGTCTCTTGTCATTTTTTTCCAAACTGAGGCTGGGCATGTTCTT
AAGATATTCTTAATTTTTCGACGAATTTCAGCCTCAATGTTCTTATAAAC
TGGGTTCTAATAAGAAAAAAAAACTTGTATGCAATTAATCTTTAGTTGGT
GTTCTGTGTCCACCCATTTCTTGTATGTAACCTTTTAATGGCTTACTTAA
TGACCATATATGGATAATAATCTTGTATTATCTATCTAACCTTTGCCAGT
TCTTTGCGTTTGCCCCTCTCTTCGTTTGAATTAGAATATGTTTTTCGTTT
GCTAGAGTTTGTTTTTTGATATAATTGTATGACTAGCTTTTCAGTTTCCA
CCCATTTCTTGTGTGTAAAGCTGTGATTTAAAGTGGATTGTTTGGATATG
ATTTGTTTGTCCGCTCAAATGGATTCTAATCTTCCTTTATTTGCAGGTAT
AACATTGCATAACCCGGCTGATATTGTAATACCGCAATACTTGTTACCAG
ACTTGTATCAACTTGGTAGATCATGTGTCTTCTCCATAAAACCATGTATG
TTAGATCCATTTAGTGATATGGAGCTATCAGAGAAAAACGAGGAAGATGA
TTTCCATTGCAAGTATTTTGATTCTATAACCAATTGTAAAACAACACATA
ATGTCCATCCAGAACTGTTGGTGAATGAAGATTATATTGGTGTTAAACCA
TGTGATAGAGGTAGCCGCATTGGATTTTTCATATCACCAGGCAGAGAATT
ATTTTTCATTATCAATGGGATACAATATGGACCTTGTGCAGGACAAATTC
CAATAAATGGTCCAGTTTATGCGGCTCTTGATTTGTATGGGATGACAAGT
CAAATAAAAGTCATAAATTGCCATGGTAAGCTTTTCTAACTTTTCCTCGC
ACGTTTCAGAGTTAGTAAGGTAGCATAAAGAGCTTTAAATAAGGTTATGA
ACAAAAGACCGACCATTTAAAGTTTAAAAAGACCTGTTTATCACACCTTT
TTATACAAATAATGTTGGAATGATTTCCTGAACAGTGTAGAATCAGGAAT
TCCTCGTTAAACAAAAAGATCTTGCTATTAATTTACCGCCCTATCCAGGA
GTCAAATAGATACATATCTGAACTTCCCTCAAAAATTGTTTTTTTCTATC
TTTTCTCCTACAGTAGCACGACTGAAGACTTTGAGTATGGACTCATTGTC
TTCAAATCATTCACGTAAAACAATATCCGAACAAAATCTACCGAAACTTT
TAAAGAAAGAACTTTTGCTGATGTATGGATTAGTCGAGGATGAGGAAGAT
AAATTATCGTTGTCTTATTCCTCATCTAAACGACCAAGGCTGATGTCAAA
ATTATGCTGGGACCAAGGATAAATGTCTTTTAGATAATGCAATGATTATA
TAATCCTTAATTTATCCATATTTTAAGTGCATTTTATACTACTATTTTAT
TTATTGTACATTTTCGTGTTTTAGAGTTTCAAGTTTGAATTTTGAGAACT
CATAGAAAATACACGGGCTGCAAAATTATATCAATGCAGTCAAAACATGT
GATTACTCGAAAAAGTTCACGTGATCTTATTCCCATGTTACTTGCTTTAC
AACTTACAGCTGATAACTTTATTAGTGTCAATAAATTTGAACCAATCAGA
AATAAATGTCATGTAACAAGCACATAAAAATTTCGAGTGAAAGCGTGATT
TGTCTTCAGACTTTAATTTTGCAACCTTCTCTGTATTGATATACATATAT
GCCTATCAATTAGAAGTGATTTATACAAGCATGCAGGTCTTCATAGGGCT
ACTTAGACTACACAATATATTGACGAACAATATTTGACAATATCGTTTTC
GGACCGTAATGTACGATGTAAATAACAGGTGCTCTATTATGAAAAGGAAT
TTTCCTTCTGTAAACAATCCCCCTATATTGTTGGAAAATTGCAAATCGAG
CTGACAATATATTGCAGAAACCTTTCAATATATTGTCTGCACTCTAGCAA
TATATCATCAATATATTGCCTGACAATATATTGTGTAGTGTATGTAACCC
TTATAATATACGTTTGTCCGAGCAGCAAGAGTGTACGTCCCACACCTCCA
ATCAACACTCTGAAACGGTCCAGAAAATGTCCCCTTTGGAGCATGATTTC
AAATTAGGAGAGACATTTACGGGGAGGTAAAGATAAATGATTTTCTCTCT
TGCGTCGTTTTTTAATTTCATTATAGACTTGTTATTTCGGAAATCCTCGG
ACTAAATCTTTTTTTTCGATTAGAAAATGAAATAATTATGTTATTTTGAT
AGAATAANGAAATCCTCGGACTAAATCTTTTTTTCGATTAGAAAATGAAA
TAATTATGTTATTTTGATAGATGTATAAATTTTTTAGCCAACTGGCTCAA
TGTTATATTTTACAAAATGTTTTGTTGGAAGTCATACAGTATGCATATTT
ATCACATATTTTGTTGGGTCGTACATATAGTTGACCATAGAAAATTTTCA
ATGCATTTTTACTTTATTATGCAAAAGTTTTAAAGACAAACACTGTCATG
TCAATCCGCAGTTGTTGATTTATATCTGGAGCTTGCCCAAAATTGTGTTG
ATGTTGG Coding sequence (CDS) from alignment at scaffold_362:505016..508672- >TCONS_00062256 ID=TCONS_00062256|Name=TCONS_00062256|organism=Clytia hemisphaerica|type=CDS|length=2880bp|location=Sequence derived from alignment at scaffold_362:505016..508672- (Clytia hemisphaerica)
TAGCACGACTGAAGACTTTGAGTATGGACTCATTGTCTTCAAATCATTCA
CGTAAAACAATATCCGAACAAAATCTACCGAAACTTTTAAAGAAAGAACT
TTTGCTGATGTATGGATTAGTCGAGGATGAGGAAGATAAATTATCGTTGT
CTTATTCCTCATCTAAACGACCAAGGCTGATGTCAAAATTATGCTGGGAC
CAAGGATAAGTATAACATTGCATAACCCGGCTGATATTGTAATACCGCAA
TACTTGTTACCAGACTTGTATCAACTTGGTAGATCATGTGTCTTCTCCAT
AAAACCATGTATGTTAGATCCATTTAGTGATATGGAGCTATCAGAGAAAA
ACGAGGAAGATGATTTCCATTGCAAGTATTTTGATTCTATAACCAATTGT
AAAACAACACATAATGTCCATCCAGAACTGTTGGTGAATGAAGATTATAT
TGGTGTTAAACCATGTGATAGAGGTAGCCGCATTGGATTTTTCATATCAC
CAGGCAGAGAATTATTTTTCATTATCAATGGGATACAATATGGACCTTGT
GCAGGACAAATTCCAATAAATGGTCCAGTTTATGCGGCTCTTGATTTGTA
TGGGATGACAAGTCAAATAAAAGTCATAAATTGCCATGACTACTCTAAAT
CGACAATATCATGCAAAATATGGAGCACTTAAAATTGATGAACGTGGATG
GGCCGGCAATTTACGATGCGTAGCACGACTGAAGACTTTGAGTATGGACT
CATTGTCTTCAAATCATTCACGTAAAACAATATCCGAACAAAATCTACCG
AAACTTTTAAAGAAAGAACTTTTGCTGATGTATGGATTAGTCGAGGATGA
GGAAGATAAATTATCGTTGTCTTATTCCTCATCTAAACGACCAAGGCTGA
TGTCAAAATTATGCTGGGACCAAGGATAAGTATAACATTGCATAACCCGG
CTGATATTGTAATACCGCAATACTTGTTACCAGACTTGTATCAACTTGGT
AGATCATGTGTCTTCTCCATAAAACCATGTATGTTAGATCCATTTAGTGA
TATGGAGCTATCAGAGAAAAACGAGGAAGATGATTTCCATTGCAAGTATT
TTGATTCTATAACCAATTGTAAAACAACACATAATGTCCATCCAGAACTG
TTGGTGAATGAAGATTATATTGGTGTTAAACCATGTGATAGAGGTAGCCG
CATTGGATTTTTCATATCACCAGGCAGAGAATTATTTTTCATTATCAATG
GGATACAATATGGACCTTGTGCAGGACAAATTCCAATAAATGGTCCAGTT
TATGCGGCTCTTGATTTGTATGGGATGACAAGTCAAATAAAAGTCATAAA
TTGCCATGACTACTCTAAATCGACAATATCATGCAAAATATGGAGCACTT
AAAATTGATGAACGTGGATGGGCCGGCAATTTACGATGCGTAGCACGACT
GAAGACTTTGAGTATGGACTCATTGTCTTCAAATCATTCACGTAAAACAA
TATCCGAACAAAATCTACCGAAACTTTTAAAGAAAGAACTTTTGCTGATG
TATGGATTAGTCGAGGATGAGGAAGATAAATTATCGTTGTCTTATTCCTC
ATCTAAACGACCAAGGCTGATGTCAAAATTATGCTGGGACCAAGGATAAG
TATAACATTGCATAACCCGGCTGATATTGTAATACCGCAATACTTGTTAC
CAGACTTGTATCAACTTGGTAGATCATGTGTCTTCTCCATAAAACCATGT
ATGTTAGATCCATTTAGTGATATGGAGCTATCAGAGAAAAACGAGGAAGA
TGATTTCCATTGCAAGTATTTTGATTCTATAACCAATTGTAAAACAACAC
ATAATGTCCATCCAGAACTGTTGGTGAATGAAGATTATATTGGTGTTAAA
CCATGTGATAGAGGTAGCCGCATTGGATTTTTCATATCACCAGGCAGAGA
ATTATTTTTCATTATCAATGGGATACAATATGGACCTTGTGCAGGACAAA
TTCCAATAAATGGTCCAGTTTATGCGGCTCTTGATTTGTATGGGATGACA
AGTCAAATAAAAGTCATAAATTGCCATGACTACTCTAAATCGACAATATC
ATGCAAAATATGGAGCACTTAAAATTGATGAACGTGGATGGGCCGGCAAT
TTACGATGCGTAGCACGACTGAAGACTTTGAGTATGGACTCATTGTCTTC
AAATCATTCACGTAAAACAATATCCGAACAAAATCTACCGAAACTTTTAA
AGAAAGAACTTTTGCTGATGTATGGATTAGTCGAGGATGAGGAAGATAAA
TTATCGTTGTCTTATTCCTCATCTAAACGACCAAGGCTGATGTCAAAATT
ATGCTGGGACCAAGGATAAGTATAACATTGCATAACCCGGCTGATATTGT
AATACCGCAATACTTGTTACCAGACTTGTATCAACTTGGTAGATCATGTG
TCTTCTCCATAAAACCATGTATGTTAGATCCATTTAGTGATATGGAGCTA
TCAGAGAAAAACGAGGAAGATGATTTCCATTGCAAGTATTTTGATTCTAT
AACCAATTGTAAAACAACACATAATGTCCATCCAGAACTGTTGGTGAATG
AAGATTATATTGGTGTTAAACCATGTGATAGAGGTAGCCGCATTGGATTT
TTCATATCACCAGGCAGAGAATTATTTTTCATTATCAATGGGATACAATA
TGGACCTTGTGCAGGACAAATTCCAATAAATGGTCCAGTTTATGCGGCTC
TTGATTTGTATGGGATGACAAGTCAAATAAAAGTCATAAATTGCCATGAC
TACTCTAAATCGACAATATCATGCAAAATATGGAGCACTTAAAATTGATG
AACGTGGATGGGCCGGCAATTTACGATGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062256-exon-scaffold_362-1575043694:508462..508672 | TCONS_00062256-exon-scaffold_362-1575043694:508462..508672 | Clytia hemisphaerica | exon |
| TCONS_00062256-exon-scaffold_362-1575043694:507704..507752 | TCONS_00062256-exon-scaffold_362-1575043694:507704..507752 | Clytia hemisphaerica | exon |
| TCONS_00062256-exon-scaffold_362-1575043694:506748..507176 | TCONS_00062256-exon-scaffold_362-1575043694:506748..507176 | Clytia hemisphaerica | exon |
| TCONS_00062256-exon-scaffold_362-1575043694:505016..506459 | TCONS_00062256-exon-scaffold_362-1575043694:505016..506459 | Clytia hemisphaerica | exon |
| TCONS_00062256-exon-scaffold_362-1510915933:508462..508672 | TCONS_00062256-exon-scaffold_362-1510915933:508462..508672 | Clytia hemisphaerica | exon |
| TCONS_00062256-exon-scaffold_362-1510915933:507704..507752 | TCONS_00062256-exon-scaffold_362-1510915933:507704..507752 | Clytia hemisphaerica | exon |
| TCONS_00062256-exon-scaffold_362-1510915933:506748..507176 | TCONS_00062256-exon-scaffold_362-1510915933:506748..507176 | Clytia hemisphaerica | exon |
| TCONS_00062256-exon-scaffold_362-1510915933:505016..506459 | TCONS_00062256-exon-scaffold_362-1510915933:505016..506459 | Clytia hemisphaerica | exon |
| TCONS_00062256-exon-scaffold_362-1491911889:508462..508672 | TCONS_00062256-exon-scaffold_362-1491911889:508462..508672 | Clytia hemisphaerica | exon |
| TCONS_00062256-exon-scaffold_362-1491911889:507704..507752 | TCONS_00062256-exon-scaffold_362-1491911889:507704..507752 | Clytia hemisphaerica | exon |
| TCONS_00062256-exon-scaffold_362-1491911889:506748..507176 | TCONS_00062256-exon-scaffold_362-1491911889:506748..507176 | Clytia hemisphaerica | exon |
| TCONS_00062256-exon-scaffold_362-1491911889:505016..506459 | TCONS_00062256-exon-scaffold_362-1491911889:505016..506459 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:505016..508672 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR006573 | NHR_dom |
Blast
BLAST of TCONS_00062256 vs. Swiss-Prot (Human)
Match: NEUL2 (Neuralized-like protein 2 OS=Homo sapiens GN=NEURL2 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.128e-21 Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1
Query: 34 RFHKEHGQNIRLSEDCTVASRTQSFANALVFSQRPLEESEVFMVEITEHERGWAGNLR 207
RFH+ HG NIR+ T A+R +SFA+ + FS+ PL +VF+VEI E E GW G+LR
Sbjct: 25 RFHRVHGANIRVDPSGTRATRVESFAHGVCFSREPLAPGQVFLVEIEEKELGWCGHLR 82 HSP 2 Score: 52.7582 bits (125), Expect = 6.128e-21 Identity = 44/166 (26.51%), Postives = 75/166 (45.18%), Query Frame = 2
Query: 245 GALKIGITLHNPADIV-IPQYLLPDLYQLGRSCVFSIK------PCMLDPFSDMELSEKNE----EDDFHCKYFDSITNCKTTHNVHPEL---LVNEDYI--GVKPCDRGSRIGFFISP----GRELFFIINGIQYGPCAGQIPINGPVYAALDLYGMTSQIKVIN 682
G L++G+T +PA + +P++ LPDL LG + VF+I P P ++ + E + F I + P L L+++ Y + P R SR+G P ++ IING GP A +P P+YA +D++ T ++++
Sbjct: 79 GHLRLGLTALDPASLAPVPEFSLPDLVNLGHTWVFAITRHHNRVPREGRPEAEAAAPSRPPTLLVEPYLRIEQF-RIPRDRLVGRSRPGLYSHLLDQLYELNVLPPTARRSRLGVLFCPRPDGTADMHIIINGEDMGPSARGLPAAQPLYAVVDVFASTKSVRLVQ 243
The following BLAST results are available for this feature:
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