TCONS_00062254 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062254
Unique NameTCONS_00062254
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1806

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062254 ID=TCONS_00062254|Name=TCONS_00062254|organism=Clytia hemisphaerica|type=transcript|length=1806bp
TTTTGTTCTTGTTTGAATCTCTGACGGTCTCACAAGGACTTTCAAAACAG
CTATCTAATAACCAACCAAACCATATTGGCACTCACGATGTTTCATTTAA
ACCAAGAACATGGTATCAACATCCAATTAACAGACAATTGCACTGTAGCC
ACCAGAACTGAGAGCTTCTCTAACGCTTTAGTGTTCAGCCAACGTCCTTT
ACAAGAAGGTGAAGTATTCATGATTGAGATCACGGACAGTAAAGATGGAT
GGTCTGGTAATTTGAGGTGTGGTATCACACTGCATAACCCCGAGGAGATT
ACCATCCCACAATACCTGCTACCAGATCTCAGTCGCCTTGGCAAATCATG
CGTCTTTTCAATCCGTCCGTCCACATCAGACCCATTTAACAATCTCGAAG
CAACAAATCAGAATAATCAAAACAGTTCGATCAACAACGAGgttcatttg
aaatattttgattcaGTCGGTCGCAGTGAGAAAGCAACGCATAGCATTCA
TCCAAAATTACTTGTAAATCACAATTTCAAGGATCTCAAGCCGTGTGATA
CAGGTAGCCGCATTGGATTTTTCATATCACCAGGCAGAGAATTATTTTTC
ATCATCAATGGGATACAATATGGACCTTGTGCAGGACAAATTCCAATAAA
TGGCCCAGTTTATGCAGCTCTTGATTTGTATGGGATGACAAGTCAAATCA
AAATCGTAAATTGCAATGTTCCATCACTCTTAACATCGGGAATGCAAGCA
GCACGTGTATCGTTCGATAGAAAATGCATCACTGAACAGAACCTACCACG
AGATTTGAAACGAGATTTATTGAACACTTATAAAACACCAGCAACTCAAA
GCACTCAAACTGAAACAGCAAGTGAAGAAAATGAACAAATAACTGAAGTG
CAGCAAGACCCTCACTCAACATCTGTCATTTTCTTTTAACAATCTAGTCT
ATGGGGAAatcaatttgaattttgatggGTTTTTTGGGATGTTGACTACG
ATATGGTTCCACAACCTCGACCAGGGCTTTTATCATTCTTGTGGAGGATA
GGTTGTGTGTGATATTGTTTGGGGTTttctttgataaattttatcaagCT
CGCAACAAGCAAAGAATTGCTCTAACCGAGAACCGAGATCCTCGATCGAA
AGAGGAACAATGGAACAATAAATTCTAAAGATGTAGGAATACAACAGCAT
TCGGTTAGCAATGACTTTATAAATAGCCATCACCAAATGGTTTTGGACGG
TTTACCCCAAACCAAAACCGGTATTAATTGTTCGTTAAAGTGAGACTTTT
AGTAGATGATTACCCGATAATATTTTGATATGTTCggttttattttagtt
ttgttgAAGATGATTTTGTTCAGTTTATAAAAACAGACTCGACAACTTTT
agttttcatttaatttttttgtatgtAGAAatagacacccccttctcaca
gacccactgggaacccttcccactggaaaaactgGCCAAGATATCGTCCC
GGTGGAAAATGATCCTCCAATTTCTGTCCCCACTGAAATTAATCAAATAA
GCCAATCctatcctcactgcaaaatatttactatttttcccttccccact
gaattttctgacaaaagaattgaaatccccatttataaaaatatgagaat
atcatatcaattcccatcgagtttcagtcagTTTCAGTTCAGTTTCAGTG
TAAATAGGGAATAAAGAAGAGGCTTTTAGAGTCAGGAAACATTATCAAAT
TTATAAAATCTTTCACAAACATTCACTTGTGACACGTTTAAAATCTTAGT
CGGtat
Run BLAST on NCBI

transcript from alignment at scaffold_362:489670..494622-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062254 ID=TCONS_00062254|Name=TCONS_00062254|organism=Clytia hemisphaerica|type=transcript|length=4953bp|location=Sequence derived from alignment at scaffold_362:489670..494622- (Clytia hemisphaerica)
TTTTGTTCTTGTTTGAATCTCTGACGGTCTCACAAGGTATGTTATATTCA
CTTTTAATTGAATTTCTGGCGATTGAAACACCCCTATCTCAACAGAGAAA
TGAAAAGCGAAGAACATTTGTCTATTTGTTAGACTTAAAACCCAGTTTTT
TCATTTCACATCTTTCCGATGGCTAACGAAAGTTCTGAAAACCTTTGTTC
AGCTAGGCGTTTTAGGCGGTTGAGGTTGGGGCATGATGGGGCTGTCTAGC
TTTTTTCTAAACACCCCTCTTCCAGTGACTCGGTGAGAATCCAGCTTGCG
TTGGACGCGTTTGTTAAGTTTAGGGTTATCTAAGTAAATTTATTAACCCT
TTAAGTGTCATGGTCATTTTTTTCTAAGTTTTTTAAAGAAAATTGCTAGT
TCAAATTTTAGAGGCTTATATCTCCGGATCTAGAAGGAGTTAGAAGCTCG
TTTATAGTTCGTTGGATAGCTTAGACTATCCTCATTCTTTTATACTATAT
AAGAACATAAGGCTTCGATGGCTAAAATGTTAAGAACATTTTTAAGGCTT
TAGAGACTCTAAAACACCAGATTTCTTAGAAAATGGACAAAAATACTCAC
AAAAAGGAGAAAATAAAAACATGTTAAGAACATTTTAAGGCTTTGGAGAC
TCTAAAACACCCTATTTCTTAGGGAAATGGACAAAAATGCTTACAAAAAT
GGCAAAATAAGAACACGTTAAGAACATTTTAGGCTAAAAACTCAAAAAGT
TAAGAATATTCATAGGCTTCAAAAATGTTGGATGTTCTTATAAAAAGATT
TTTGGATGTTCTTATAAAAAACGTGTACAGTACAGTATAAGATCGTTCCC
TGATAGTTGCTACTCAACGGATGAGTTTTATTCTTATTCTTATAATTATG
ATTAAACTTTTCTTATAAATAAACAAGATTATTCATGAAGAACTTTTTCT
AAATGCAAACAAAAGAGGGCGATTAACATGGAGACCGTGCATTTTCTAAT
TATAATTACCTAGAGATAATTAGTATTATGTTTGTAAAGAGCTTGTTAAC
TTTTTGCGAATCAATTTACTCTAATTGGGCTACCATAATTTGGGTTAACA
ATCAAAATGATTAAAAATAGCGAACTTTTTGCACGCACATGGAACGGTAC
CTGTTATTAAATAGAAAAAGGACTGGGACAGGCTAGTACCATTCCTAGAA
AGTGCAGTAGACATTTCTTAAATCGCATCTTATTTTCAAAGATCTTTTCC
TCTCTTTATATTTTCTAGCAAAGTAGTTAAAGAATCTACTCTTCATTTTG
AAGGGGATTATCTAGGGGGATCCCCATTGTTAGGTTGTTACAATTTGAAT
ACGTTCGTAATTAGTGACAGGAAAATGAACTATAGCCACCTGATTATAAG
TGAAATTAGTTCTGCCTTAGGATGGCCATGTAATTAGATTGATTTGAATT
TTGTTGTTTTCGAGAAACGTGCTCCTTTTCACAGGCGCTGGTCATCACAG
GTGGATATTTGTTTATTTAGTATCTTTTTTTTGTGGAGTTCGTAGTTTTC
TGGTGTACGTGAATCGGATTAGAAAAAATTAGACATTGTTATGAAAGTTA
GCTTTTGTTTGTGTGCTTTTGTGGAGTTGCTTCACTTCAAAAAAGGACTT
CTGTATCATGTGTTTGGTAGAAACTACTAACCCTATACCAACTATGGACG
GGTTTCAATGTTTTGATTTTGTGCGGGCGGACTGATGTGGGCGGGCGATT
GCGCTTAATTATTGGAGGCAAAAAGACTTACGATTTATATGGAGGCGAGT
GAATATCAATAATATTTTTGATAACTACCAGTCATATCTGTTTATGAAGC
CTATTATACCTCTGAGAAAACATACTAAAATTTCTTTTCAGAAGTCCTAC
CAGAGACTTCGTCAAAACAAAAAATCTGCTTGCCTCCAGCAAATGTTATG
GTCTTTCTGCCTCCAAAAACTCGGGCTGTAAGTCACGTGAGTAAACAAAT
GACGTATCACAAAAGCCATTTGTTTGACACTTGGGTAATAAACTAAGTTA
TAAAAGGAGTTCTGAGGTCAAACACAGAATAAGACATTTTTTTGCTCTAC
TTACTTACCTACTTTAGGAAAAACAGAAATCTTACTTCAATCTTGTTCTT
CTTGCAGGACTTTCAAAACAGCTATCTAATAACCAACCAAACCATATTGG
CACTCACGATGTTTCATTTAAACCAAGAACATGGTATCAACATCCAATTA
ACAGACAATTGCACTGTAGCCACCAGAACTGAGAGCTTCTCTAACGCTTT
AGTGTTCAGCCAACGTCCTTTACAAGAAGGTGAAGTATTCATGATTGAGA
TCACGGACAGTAAAGATGGATGGTCTGGTAATTTGAGGTGTGGTATCACA
CTGCATAACCCCGAGGGTGAGTTTTGAAGATATCTCATACAAAATATTAG
AAGAAGCTACCATGTCTCAAGCTGAAGCAGAATGATGCGTAATCATTGCT
GAGTAGTCAACAGTTCGATGCCGGCAATTCGATCAATCAAGACCATTCTT
TCACCTCCTCGTCTCTAGCGAGGCCAGTTATTTTTTCGTATTGAACAAAT
TGCCAGTGCTGAACTGTGTTCAACTTCAGTGGTCTACTCAGCAAAGATGA
TTGTATCATTGTTTTTTTTTCAACTGCCGTGGTTTGAGAAAGATAAAGTA
GCTCTATTGCATAGTGTGTTTTTGAAAAAAATTTCATTACATTCGCTGAG
TTTTCTCAGGTATTTTATTGTTGAATTAGATATCTTATCTGAATTACTGA
TGAGCGCTATTCCCGCGTTCTGTGTCCCCGCGTTCTGTGTCCCAGGGAAA
ACAGATAAGACGCTTCCAGACAGGTAAGAAAATGGTTGATAAAACTTTAT
TTAAATCGGTTCTGCTTCATCTTTCTATCTAGAGATTACCATCCCACAAT
ACCTGCTACCAGATCTCAGTCGCCTTGGCAAATCATGCGTCTTTTCAATC
CGTCCGTCCACATCAGACCCATTTAACAATCTCGAAGCAACAAATCAGAA
TAATCAAAACAGTTCGATCAACAACGAGGTTCATTTGAAATATTTTGATT
CAGTCGGTCGCAGTGAGAAAGCAACGCATAGCATTCATCCAAAATTACTT
GTAAATCACAATTTCAAGGATCTCAAGCCGTGTGATACAGGTAGCTGTTA
GGGTTTATTTCACATAGCATAGGGGCTACTCACACCTTGATTAGAAGGGT
TGTATATGAATAAGCCCTACATAACTTTTTTTTAACATCAGTGGTACTTC
AATATGGCTTTCTTTCGCCGTCTGATTTAATTTGCAGTTCATTGTTTATT
TTATTTCAAGATATTTCAAGAGACATATAAAAATTTTGTACTTTTGTGTC
ACATAGCAGAATAAACCCATTGCACGAGCTTCGACAAATCGGGTTATCAG
GGATCTATCAGCAAGCCTTGTTATTTATATTCCCTATACCATCTCGAGCA
GACCGTGTAACTGATTGTATCCTTCATTGTGTTTTCAAAAGGTAGCCGCA
TTGGATTTTTCATATCACCAGGCAGAGAATTATTTTTCATCATCAATGGG
ATACAATATGGACCTTGTGCAGGACAAATTCCAATAAATGGCCCAGTTTA
TGCAGCTCTTGATTTGTATGGGATGACAAGTCAAATCAAAATCGTAAATT
GCAATGGTAAGTATCCAAAGAACCTTCTTACAAGCAGAAAATCTCCGAGC
AGACTCTGACTACTCCACACTACTCTAAAAGCCCAGGCTCCGTAAGAGAA
TCTGCTAATCAGAAGTTCCAGCATTATTTTGTAGTTTGAATAATTTTTGA
ACACTTGCTTTTTAGTTCCATCACTCTTAACATCGGGAATGCAAGCAGCA
CGTGTATCGTTCGATAGAAAATGCATCACTGAACAGAACCTACCACGAGA
TTTGAAACGAGATTTATTGAACACTTATAAAACACCAGCAACTCAAAGCA
CTCAAACTGAAACAGCAAGTGAAGAAAATGAACAAATAACTGAAGTGCAG
CAAGACCCTCACTCAACATCTGTCATTTTCTTTTAACAATCTAGTCTATG
GGGAAATCAATTTGAATTTTGATGGGTTTTTTGGGATGTTGACTACGATA
TGGTTCCACAACCTCGACCAGGGCTTTTATCATTCTTGTGGAGGATAGGT
TGTGTGTGATATTGTTTGGGGTTTTCTTTGATAAATTTTATCAAGCTCGC
AACAAGCAAAGAATTGCTCTAACCGAGAACCGAGATCCTCGATCGAAAGA
GGAACAATGGAACAATAAATTCTAAAGATGTAGGAATACAACAGCATTCG
GTTAGCAATGACTTTATAAATAGCCATCACCAAATGGTTTTGGACGGTTT
ACCCCAAACCAAAACCGGTATTAATTGTTCGTTAAAGTGAGACTTTTAGT
AGATGATTACCCGATAATATTTTGATATGTTCGGTTTTATTTTAGTTTTG
TTGAAGATGATTTTGTTCAGTTTATAAAAACAGACTCGACAACTTTTAGT
TTTCATTTAATTTTTTTGTATGTAGAAATAGACACCCCCTTCTCACAGAC
CCACTGGGAACCCTTCCCACTGGAAAAACTGGCCAAGATATCGTCCCGGT
GGAAAATGATCCTCCAATTTCTGTCCCCACTGAAATTAATCAAATAAGCC
AATCCTATCCTCACTGCAAAATATTTACTATTTTTCCCTTCCCCACTGAA
TTTTCTGACAAAAGAATTGAAATCCCCATTTATAAAAATATGAGAATATC
ATATCAATTCCCATCGAGTTTCAGTCAGTTTCAGTTCAGTTTCAGTGTAA
ATAGGGAATAAAGAAGAGGCTTTTAGAGTCAGGAAACATTATCAAATTTA
TAAAATCTTTCACAAACATTCACTTGTGACACGTTTAAAATCTTAGTCGG
TAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039019XLOC_039019Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062254-exon-scaffold_362-1575043694:494587..494622TCONS_00062254-exon-scaffold_362-1575043694:494587..494622Clytia hemisphaericaexon
TCONS_00062254-exon-scaffold_362-1575043694:492207..492465TCONS_00062254-exon-scaffold_362-1575043694:492207..492465Clytia hemisphaericaexon
TCONS_00062254-exon-scaffold_362-1575043694:491433..491690TCONS_00062254-exon-scaffold_362-1575043694:491433..491690Clytia hemisphaericaexon
TCONS_00062254-exon-scaffold_362-1575043694:490917..491081TCONS_00062254-exon-scaffold_362-1575043694:490917..491081Clytia hemisphaericaexon
TCONS_00062254-exon-scaffold_362-1575043694:489670..490757TCONS_00062254-exon-scaffold_362-1575043694:489670..490757Clytia hemisphaericaexon
TCONS_00062254-exon-scaffold_362-1510915933:494587..494622TCONS_00062254-exon-scaffold_362-1510915933:494587..494622Clytia hemisphaericaexon
TCONS_00062254-exon-scaffold_362-1510915933:492207..492465TCONS_00062254-exon-scaffold_362-1510915933:492207..492465Clytia hemisphaericaexon
TCONS_00062254-exon-scaffold_362-1510915933:491433..491690TCONS_00062254-exon-scaffold_362-1510915933:491433..491690Clytia hemisphaericaexon
TCONS_00062254-exon-scaffold_362-1510915933:490917..491081TCONS_00062254-exon-scaffold_362-1510915933:490917..491081Clytia hemisphaericaexon
TCONS_00062254-exon-scaffold_362-1510915933:489670..490757TCONS_00062254-exon-scaffold_362-1510915933:489670..490757Clytia hemisphaericaexon
TCONS_00062254-exon-scaffold_362-1491911889:494587..494622TCONS_00062254-exon-scaffold_362-1491911889:494587..494622Clytia hemisphaericaexon
TCONS_00062254-exon-scaffold_362-1491911889:492207..492465TCONS_00062254-exon-scaffold_362-1491911889:492207..492465Clytia hemisphaericaexon
TCONS_00062254-exon-scaffold_362-1491911889:491433..491690TCONS_00062254-exon-scaffold_362-1491911889:491433..491690Clytia hemisphaericaexon
TCONS_00062254-exon-scaffold_362-1491911889:490917..491081TCONS_00062254-exon-scaffold_362-1491911889:490917..491081Clytia hemisphaericaexon
TCONS_00062254-exon-scaffold_362-1491911889:489670..490757TCONS_00062254-exon-scaffold_362-1491911889:489670..490757Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:489670..494622 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.479356	0.564768	0.598729	0.626425	0.56735	0.564402	0.0206443	0.729921	0.259785	2.06513	4.08223	1.26548	2.60528	2.67211	13.2537	2.5954	19.5192	7.37367	2.23107	1.24777	0.45073	0.691451	3.34089	2.69507	0.715225	1.17911	0.944799	0	1.68873	3.12793
Blast
[Close]
BLAST of TCONS_00062254 vs. Swiss-Prot (Human)
Match: NEUL2 (Neuralized-like protein 2 OS=Homo sapiens GN=NEURL2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.274e-26
Identity = 82/260 (31.54%), Postives = 125/260 (48.08%), Query Frame = 1 
Query:   85 TMFHLNQEHGINIQLTDNCTVATRTESFSNALVFSQRPLQEGEVFMIEITDSKDGWSGNLRCGITLHNPEEIT-IPQYLLPDLSRLGKSCVFSIR------PSTSDPFNNLEATXXXXXXXX----XXXEVHLKYFDSVGRSEKATHSIHPKLLVNHNFKDLKPCDTGSRIGFFISP----GRELFFIINGIQYGPCAGQIPINGPVYAALDLYGMTSQIKIVNCN--VPSLLT-SGMQAARVSFDRKCITEQNLPRDLK 810
            T FH  + HG NI++  + T ATR ESF++ + FS+ PL  G+VF++EI + + GW G+LR G+T  +P  +  +P++ LPDL  LG + VF+I       P    P     A ++             +  +     VGRS    +S     L   N   L P    SR+G    P      ++  IING   GP A  +P   P+YA +D++  T  +++V     +PSL T   +   R    R  I   +LP++LK
Sbjct:   24 TRFH--RVHGANIRVDPSGTRATRVESFAHGVCFSREPLAPGQVFLVEIEEKELGWCGHLRLGLTALDPASLAPVPEFSLPDLVNLGHTWVFAITRHHNRVPREGRPEAEAAAPSRPPTLLVEPYLRIEQFRIPRDRLVGRSRPGLYSHLLDQLYELNV--LPPTARRSRLGVLFCPRPDGTADMHIIINGEDMGPSARGLPAAQPLYAVVDVFASTKSVRLVQLEYGLPSLQTLCRLVIQRSMVHRLAIDGLHLPKELK 279
The following BLAST results are available for this feature:
BLAST of TCONS_00062254 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NEUL22.274e-2631.54Neuralized-like protein 2 OS=Homo sapiens GN=NEURL... [more]
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