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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062253 ID=TCONS_00062253|Name=TCONS_00062253|organism=Clytia hemisphaerica|type=transcript|length=1324bp
ATTATTTACAAAGAAGTTTATGCGGGACACCCATTAAGCTATTAAGTTTC
ATCAAAGGATGAAATTTAAGCATTTTGTAATATATACTCTTTATGATAAA
GTTTAGTATTTGAGTTCAGTGTCGCAATGGCAATTCAAGATGTGTTTGTT
GGTGCTCACGGATTGTGAAATATCTCTAGAATTTTCGATTccgtttgttt
tgttttatgtcTTCTTCAGGTGCCGTCGTCCCAAAAGAACCCCTAGAATA
TCTGTAACCCAGTTGAGTCTTAATATCCATAAGATCGTTACAGTTCACAA
ATCTCTGGGGATCTGATGCTGGTTGAATGAATGGATAAAGGTTGGATAGA
TTGGTGAGATTCTCGTTGCCAGTTTGATTTGGTGATGGACCTTGACCATA
CTTTGCTTTGATGCCTTGATCGCCAGCGCCTTGGGTTATAACGAAAGGAT
CGGTGTGGAATTTCACTTGCCAGAGCCAAAAGACACGATCGATGTTGGCC
ATGTGTAGGAAGAACAAAGGATCAAAAGCAGCCATCTCTTTGACACCAAT
ATCACCAAGAGCTCCACCAAGAAGTTGTTTATTATTAACGTCACCTCCAA
GAGCTTCCAGTACTTTGTTACTGGCGTCTTCTAAAGAGGTCTGATTTCCT
TGTGAAGAGACGTTGGAGAAAGGATTGTAACCTTCAATCTCTAGGCTATC
CTTAAATGCTTGTTCAATACCATTGTTGAGAGCGTATATCACATTCTCTT
GAAGATAGAATTTAGGATTCTTAAAGCTTTGCATGATGTAATGATTTTGT
ATCTTAGCATCTGGTGTCTCATATTGTGGATTGGTCGAATCTCTCAGGCT
TGAAAACGGATATCGTTGCGTTGTGTACCCAAGAGGCTTTGCAAATTTTG
GATCACTTTCAGCTAAAGAGATAGCTTTTGGTAGAGTGTAACCTAGCAAC
GGATTCGGGATCTGATTATCATATGTGTCAATTGTGACGTAATCATCCAT
CAATAAATCTGGTAGACCTGACGTCATTGATTCATCGGATGTAGAATCCC
AAAATGGTAATGCTACCAACTGCTTTTCTGATGGAGGTGCTTGTCGGATT
AACGCCTGTTCCAGGTGTGACAAATAGGCTCGGTACCAGGGTAAAAATAA
CACGTTTTCGTGTTGACTATATCCACGCCATATTTTGGTTGACTGAGCGG
GTGTGGTCCTCATGACATAAAATGGTTGAGCATTTGTTGATGCGATATTC
CAATAGCAATCTGGATCATCGATTggtaaatttttgattttattaaaagc
CTTCAGAAAAGCGTATCTGTGAAC Run BLAST on NCBI transcript from alignment at scaffold_362:471953..473335- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062253 ID=TCONS_00062253|Name=TCONS_00062253|organism=Clytia hemisphaerica|type=transcript|length=1383bp|location=Sequence derived from alignment at scaffold_362:471953..473335- (Clytia hemisphaerica)
ATTATTTACAAAGAAGTTTATGCGGGACACCCATTAAGCTATTAAGTTTC
ATCAAAGGATGAAATTTAAGCATTTTGTAATATATACTCTTTATGATAAA
GTTTAGTATTTGAGTTCAGTGTCGCAATGGCAATTCAAGATGTGTTTGTT
GGTGCTCACGGATTGTGAAATATCTCTAGAATTTTCGATTCCGTTTGTTT
TGTTTTATGTCTTCTTCAGGTGCCGTCGTCCCAAAAGAACCCCTAGAATA
TCTGTAACCCAGTTGAGTCTTAATATCCATAAGATCGTTACAGTTCACAA
ATCTCTGGGGATCTGATGCTGGTTGAATGAATGGATAAAGGTTGGATAGA
TTGGTGAGATTCTCGTTGCCAGTTTGATTTGGTGATGGACCTTGACCATA
CTTTGCTTTGATGCCTTGATCGCCAGCGCCTTGGGTTATAACGAAAGGAT
CGGTGTGGAATTTCACTTGCCAGAGCCAAAAGACACGATCGATGTTGGCC
ATGTGTAGGAAGAACAAAGGATCAAAAGCAGCCATCTCTTTGACACCAAT
ATCACCAAGAGCTCCACCAAGAAGTTGTTTATTATTAACGTCACCTCCAA
GAGCTTCCAGTACTTTGTTACTGGCGTCTTCTAAAGAGGTCTGATTTCCT
TGTGAAGAGACGTTGGAGAAAGGATTGTAACCTTCAATCTCTAGGCTATC
CTTAAATGCTTGTTCAATACCATTGTTGAGAGCGTATATCACATTCTCTT
GAAGATAGAATTTAGGATTCTTAAAGCTTTGCATGATGTAATGATTTTGT
ATCTTAGCATCTGGTGTCTCATATTGTGGATTGGTCGAATCTCTCAGGCT
TGAAAACGGATATCGTTGCGTTGTGTACCCAAGAGGCTTTGCAAATTTTG
GATCACTTTCAGCTAAAGAGATAGCTTTTGGTAGAGTGTAACCTAGCAAC
GGATTCGGGATCTGATTATCATATGTGTCAATTGTGACGTAATCATCCAT
CAATAAATCTGGTAGACCTGACGTCATTGATTCATCGGATGTAGAATCCC
AAAATGGTAATGCTACCAACTGCTTTTCTGATGGAGGTGCTTGTNGGATG
TAGAGTCCCAAAATGGTAATGCTACCAACTGCTTTTCTGATGGAGGTGCT
TGTCGGATTAACGCCTGTTCCAGGTGTGACAAATAGGCTCGGTACCAGGG
TAAAAATAACACGTTTTCGTGTTGACTATATCCACGCCATATTTTGGTTG
ACTGAGCGGGTGTGGTCCTCATGACATAAAATGGTTGAGCATTTGTTGAT
GCGATATTCCAATAGCAATCTGGATCATCGATTGGTAAATTTTTGATTTT
ATTAAAAGCCTTCAGAAAAGCGTATCTGTGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062253-exon-scaffold_362-1575043694:472250..473335 | TCONS_00062253-exon-scaffold_362-1575043694:472250..473335 | Clytia hemisphaerica | exon |
| TCONS_00062253-exon-scaffold_362-1575043694:471953..472190 | TCONS_00062253-exon-scaffold_362-1575043694:471953..472190 | Clytia hemisphaerica | exon |
| TCONS_00062253-exon-scaffold_362-1510915933:472250..473335 | TCONS_00062253-exon-scaffold_362-1510915933:472250..473335 | Clytia hemisphaerica | exon |
| TCONS_00062253-exon-scaffold_362-1510915933:471953..472190 | TCONS_00062253-exon-scaffold_362-1510915933:471953..472190 | Clytia hemisphaerica | exon |
| TCONS_00062253-exon-scaffold_362-1491911889:472250..473335 | TCONS_00062253-exon-scaffold_362-1491911889:472250..473335 | Clytia hemisphaerica | exon |
| TCONS_00062253-exon-scaffold_362-1491911889:471953..472190 | TCONS_00062253-exon-scaffold_362-1491911889:471953..472190 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:471953..473335 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002227 | Tyrosinase_Cu-bd |
| IPR008922 | Unchr_di-copper_centre |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
The following BLAST results are available for this feature:
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