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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062246 ID=TCONS_00062246|Name=TCONS_00062246|organism=Clytia hemisphaerica|type=transcript|length=1147bp
TTTCGATCCAAGACGGACTGTGCTTGACAAGTAAGAATTTTATGCTGTTA
TCCTGAATCCTTATGTATCAGTCGGATGAACAGATCTTAAGTCTGAGATT
TATGTTATTGCAGAGTATTGATATTTATTATATGATTTCCTAACCCTATT
TTTGTTTAATNGAACAGATCTTAAGTCTGAGATTTATATTATTGCAGAGT
ATTGATATTTATTATATGATTTCCTAACcccatttttgtttgaaattttc
agaatgaAGCACAATAACGTTTTGCCAAATTCCCACTACCATAAACATTG
GCAAAATTACGTCAGGACATGGTTCAACCAACCAGGCCGTAAGAAGAGAA
GAAGAGTTGCCCGTCAAAAGAGGGCCTTGGCCATTGCACCTCGACCAGTT
GCTGGTGACCTCAGACCAGTTGTTAGATGCCCAACATTCAAATACAATAC
CAAAGTTAGAATGGGACGTGGATTTACTTTGGAAGAATTAAAAGCTGCTG
GTATTGCAGCCAACAAAGCTAGAACCATTGGCATTTGTGTCGATCATCGA
AGAAAGAACAAGTGCACTGAATCCCTTCAAGCCAATGTTCAAAGATTGAA
GGAATATCAAAGCAAATTGATTGTGTTCCCACGCAAACAAAGTAAACCAC
GAAAGACTGATAGTGAGGAAGCTGAACTTGCTGTTGCGGCCCAACTCCAA
GGACCAGTTCTTCCCATCATCCAAAGCAAACCAGTCAACAAAGCTCGTGT
TATCACCGACGAAGAGAAGAAATTATCCGTCTTCCGTACCATGCGTGTTG
CTCGTGCTAATGCTCGTCTTATCGGTATCCGTGCTAAACGTGCACGTGAA
GCTGAAGCCGAGGCTGCAATGAAAgctaagaaataaataaattctcttct
cttcaaaaaattacatttttgtcagtttttgtcTCTTCCTTTGTTTTATC
CATAAACTTTCGATAAAATGACTCACCTTATAGTGTGGTTGTAGGGGATT
CTTTCCTGAGATGTAAGCATCCTATAGAAaagtctggagaaagtttcagg
tagatcttatttttggacctaccgggaggtcctttaatttgaccgttgtc
cgttcgtctgttacaagcttttctcgggattggctcattagtttttt Run BLAST on NCBI transcript from alignment at scaffold_362:359661..367839- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062246 ID=TCONS_00062246|Name=TCONS_00062246|organism=Clytia hemisphaerica|type=transcript|length=8179bp|location=Sequence derived from alignment at scaffold_362:359661..367839- (Clytia hemisphaerica)
TTTCGATCCAAGACGGACTGTGCTTGACAAGTAAGAATTTTATGCTGTTA
TCCTGAATCCTTATGTATCAGTCGGATGAACAGATCTTAAGTCTGAGATT
TATGTTATTGCAGAGTATTGATATTTATTATATGATTTCCTAACCCTATT
TTTGTTTAATNGAACAGATCTTAAGTCTGAGATTTATATTATTGCAGAGT
ATTGATATTTATTATATGATTTCCTAACCCCATTTTTGTTTGAAATTTTC
AGAATGAAGCACAATAACGTTTTGCCAAATTCCCACTACCATAAACATTG
GCAAAATTACGTCAGGACATGGTTCAACCAACCAGGCCGTAAGAAGAGAA
GAAGAGTTGCCCGTCAAAAGAGGGCCTTGGCCATTGCACCTCGACCAGTT
GCTGGTGACCTCAGACCAGTTGTTAGATGCCCAACATTCAAATACAATAC
CAAAGTTAGAATGGGACGTGGATTTACTTTGGAAGAATTAAAAGCTGCTG
GTATTGCAGCCAACAAAGCTAGAACCATTGGCATTTGTGTCGATCATCGA
AGAAAGAACAAGTGCACTGAATCCCTTCAAGCCAATGTTCAAAGATTGAA
GGAATATCAAAGCAAATTGATTGTGTTCCCACGCAAACAAAGTAAACCAC
GAAAGACTGATAGTGAGGTAAGAAATTACTTTGATGGCTTCATTGATTAA
GTTTGTTTTACTTGGTTATGGATTTGGTTGGTTTACATGTGTGGAGTGCT
TGTTAATTTGGGTGCATGTCGCTAGTCCGACACTTTCTAGTCCGACAGTA
AAATAGTCCGAATCTATAAAATAAATTTACAATTTGGAAGTCTTTTTATC
CGACGTCACTTTTGTTCGAAAAAACGAAAGATTTTAGAGTGCCGAATGTT
GAATAAGGGTTTTTCACTGAGATAATAATAATATAATAAAAGTTCATTTT
GGCGGCATTTTGACATAATGAGAAATAAAGGACCAACCAAGTTTGCGTAA
AGATAATTTATAGCAAAAAGAATGCACCGCCTTTAAGGGTCCCTTTTTGC
ATGTTCAGAATTATGCTATTATATAGGTTGTAAATCACAAAAGAAGGGTC
GTAAAAACAGCTAAATCCAATTTCTTGACTCTTGAAAGCCTAATACTAAT
AAGCTTCCCGAAACTTAAGAAAAGTCGGGTTTAAGGGCCTAACCTCAAAG
TCGGAACTTTGAATTTTTATAAAAGATGTGCCTCCTCTTCCGCGATTCAT
ATTTCGTTTTTTATATGTTCTTTTTTTACTCGTTGTAGGACAAAATTTTT
GTCGAAATACTGACGCATTCGTCAAATCCAACGTCGGACATTTTTACTGT
CGGACTAGAAAATGTCGGACTACTGACGACCTCCCGTTAATTTTGTTGGT
TGTTGGATTTTATAAAGAGTTTCCGATAGATTAAGGCCATAATAACAATA
TAGCTTGTGATTGAGCAGTTCTTAGGTGAGTTGGTTAACGAAAAATCGTC
AGAAAAATGAATACACCTTTCCCTTAATTCGTAAAACTAATGCACCCGCA
TTATTTTGATGCTCTCCATCATTTAGACTCTGGAGGTAAACAAACCTGTT
TAAATTTCTGTTGAACAAAATCCCTGCAAATTTTAGTATGTTCAATCTAT
TCATACAGTAAATCCTCAGGCGCTTATTTAATTTTTCAGGCTCTAAGGGG
GCGCTTATTTTTTTATTTTAGAAATTCGCATATAAACAAATTCGGAAGCT
ATTTAAACTCAACTGTTTCAAAGAGTTGGATTTTCAAAAAAGGATGAATA
AAAGAAAAATTGGAAAAATCCAATTGACAATTTCTATCATTTTATTCTTA
ATTGCTTTCTTTCTTTTGAAGACATAAGTATCTGCTTAATATCTTATTCA
ATCAATAACAATATTCGAATAAGTTTGAGCGGGGCGCTTATTCAAGGATT
TATGGTAATATTATACCACCCTGAAAATATTTTGCCAAAAGAAGATCGCT
ATCAAAAGTATAAAGCTGAAAACCCACTTTCCCTAACACCTTGCAGGCCA
AAACGCATTCATTTACCTCCCAAACAGTTTTATACACACAGTGGAGCGCA
CATTTTCCCAGGCCACTTCTGCAAAGTTTACGGGAAAGGTGTATTTAAGT
CGGTGCCGTGGTATAGTGGTAGTCGACCTTGGCTTCTGTGCTGGAGGCCA
GGGTTCGATTCCCACTCACGACAGTTCACTTGGCAAGTGAACATTCCTTC
GCCCGGGTCAACCCATGCCATGTGAGGGGAATTGGGTAGTCAGTTCAAGG
TCCTGACGGGACGCTCATTAGTAAGCGTCTATAGTTGCGAGAATAGGCCT
CTAAAGCCTCCTGCAACTCAACCAAATAGAAATAGAAAAATAGAAGTATG
AGTCTGGGTGAAATCTCAAAATTGTTAGGTTTTTATCCAAATACTTCCTA
TGCTTCACCACCATCTTTTGCTTAAATTATTGATCGCACTGGATTTAAAT
TTCAAAATATAATGGAGGTATATCCAACCCTTTCCTTTGAGTTCCGGGAG
TGTATTATTATCTCCCTAGTCTTAAAAGCAGATTTCGCATTTGAAAAGAT
GGGTCCTATCATAAAATCATAGAGGGCACCCCCCCCTGGATTATGGGGGG
TTGAAGATTTTCAGATTTTTAAAAATAGGTGTGTGTTGGGTTGATGAGAA
ATTTCAGGTGGGGGTAACCCTATGTAGGTGGGGGTAACATTTTTCAGGTG
GGGGTTGTCAAGTTTTCTGTATTTAACTTCATTTGATTTTGTACTTGTTT
GTCTTTTTCAACTTTCAACATACTATACTAGATAAAAATATAAACAAATG
ACTGTCATAAGTTCTGAAGGTTAAAAAGAGTTCATTTTTTCTCCATTCTT
TTCCTTTCCAGTTTGTAGTCCTCAGGACTTTTAACTGGGATCTTTAGTGT
TCCTAAAAGGAACAAGACCTCCAAATTCGAAGGTGTGATTCGATTGCGCC
ATTTTGCGCATATGAGTTGGAGTATGGTGTAGCCCCTTTCTACCAGCGAG
GTGTTGCTGAAAAAGGTGGGGGTTGGGCTGATATGAGATTTCAGGTGGGG
GTAACCCTACGTAGGTGGGGGTTGGAGGGGTGTTGCCCACTATGAAAATC
CAAAAGTGAAGATAAACAGCTGACTGATTTGCTGTGTCTGGATTTCAATG
ATAAGGGCCCTCTATTTTCTTTTTCTAATGCGGTATCTTATCTATACCTA
TCTAATAGCTTTTATGGCTAGGGAGATAATAATACATTCCCGCAACCTAT
AGGAAAGGGTTCGATATCATCTTCGTTATATTTTGAAAATCAATTCTTGT
GCGATCAATAATTAAGCAAAAGATGTGGGGTGAAGCAACAGAAATAATTG
GATATAAATCTAAAAATTTAGTGACCTGTCTCAAAAGATTCATCAAAGTA
AGAGATTATCAGTTTGCAGGAAGACAAGAACATTGATTGATACATACCAC
TTGATACCTTTTTTGTTTGTTAAATAAAATTCAGCAAATTGAGTTGGCTG
GCTTTGGTTTTTGATTTTGTCTAATTAAAAAATCATAATTTTTTAGCGAT
AGCAACTCTGATTGGACTCGAGTACAACCCACTTGTTATTGTTAGTGGAT
TATTTTTGTCCATTTTCCATAAAATTAGTCCTCACAAAAAATTGTAATAT
TTTGGCTAAAAACCCTAGGGAAGTAATAGTACGGTCTAGTTGTGCAAATA
TTGTGCACAAAGGCGTAAAAGCATGAAACTTTGCACAATGGTAGTTTAGG
GGTCAAAAATGGATTTAAATCTCAGACCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAATCCATTTTTG
ACCCCTAAACTACCATTGTGCAAAGTTTCATGCTTTTACGCCCTTGTGCA
CAATGTTTATGACTTTTGGCACATTTAGACTGCACTATAAAAGTAATTGG
GTGAAAAAGAGACAAATTTGAAAATTAGTCTTGATTTACAATAAAAATCG
TCCACTCGAAAATGAATTCACTTAATGTAATAGGATTGTCAGCCTTGATA
ACACAGTATCCTAGATTGATCTCTTATATCAATCACATCTGATTGAGTGC
CTGGTCAATTTGATGGATTTGTGGCTGAATTCAAATTTATTGTTGCCAAG
CTATAAATACCCTCCAGTCTTCAGTTCTTTGCAGCATTTTTTGTTTTGTA
TAATGAAGAAATCGTTTTTCTCTCACCCTGACTTTTAAATAGTAGGTTGT
TTCAGATTTATTCTGCGCACATCCCCAGAATTGATTTTGGTATAGAGCTG
TATTTTGTGTATGAAATTCCTGTCTGAGAGTTTTGGTTTGGTAAAAGAAG
GTGATAAGCCTGGATTTTAGAAGGAAATTGGATCTTGAATTGAAAGGTAC
AGCACTGTTTGGTCTGAAAAATTTAATGTATTTATAATGCAGAAAATGTC
TTCCTTTGTTGTTTAATTGTTGTAGCCATATGCTTTGCTCGAAACATAAA
TCAGAACAAAAGTCTATTGGGAAAAGTACACATTTTGATGCCTCGGTAAT
AATACTGTTGTGTTGTTCTTTGATTCAGTGTCTTACTGAAACATAGAATA
TTCACCAGTGTACTATTCCCTAAATATAACTGGAGTATCATAGTGCGGTT
AGCTGATCCAAGCCAGCTCTCAGTCTCCATAAGCTCCAACAGACATCACA
ATTGTTTAATATTGTTAAAAAATATTTTCACATGTTTTTTGAATCATGAT
TTCAATATGATCAGTCTTGAACATCTTGAGGAAGATAAACTTCATGTTGG
GGTAGGATGGTTCACTCAATGATTCATTCTTCATTGATAACATGAAGATA
ATGCTTATCTTTCAGTACAGTATATGGCCCCCAAAACGGAGACTGACCCG
AAACGAAATAAAGAAAGATGTTGAAGTTTAGCGTGCAGCAAAAATTTTTA
TAAAACCTCTTCCTCTAGATTTGAGAGAAATTTTAAATTTGATCAACGTT
TTCGGGGCCACATACTGTAGATACTTTAAGAATTTCTGTCTGAAATGGAA
TATCTTGACTTTAAAGTTTGGGTTCGATACTTGTTTTAATTCCTTGGTCC
ACTCTCGGTATTGATACAATGATGATAGCATGTCTCGTTCGTATGATATA
TTTGATTATAAAACAAACGGAACACTGAGTATCAATGTTAATTCGTATCA
TTGCTTGATTATTTGTAAAGTTGTTAAGATGTGAGCATGCTGAAGATTCA
TTGAGTTTACTTAGAATCATTTACAAGTGACGTCTGTTTGTTTAGAAATA
GGTTGGTTTGAATAAACTCGATGCAAAGATGACAACATGTCTCGTTCGTA
TGATCAACTTGATTATAAACCAAACGGAACACTGAGTATCAAAAACTCTC
TTAACTGCATTCAGAATAAAGCCTAACCCTAAGTTGATTTTGACTCCTTT
GTAGGCTTTATGTAAAAGTTGTCCCGGTCAGAGTCATTGCTTTGGAGTTT
TCTGTCCAGATTTTCTATGAATATTAGGAACAAATCTCCTGTCAGAACTT
ACAGTTCAAATAAACTTGATGCAAGGATGACAACATGTCTCGTTCGTATG
ATCTACTTGATTATAAACCAAACGGAACACTGAGTATCAAAAACTGTCTT
AACTGCATTCAGAATAAAGCCTAACCCTAAGTTGATTTTGACTCCTTTGT
AGGCTTTATGTAAAAGTTGTCCCGGTCAGAGTCATTGCTTTGGAGTTTTC
TGTCCAGATTTTCTATGAATATTAGGAACAAATCTCCTGTCAGAACTTAC
AGTTCAAATAAACTTGATGCAAAGATGACAACATGTCTCGTTCGTATGAT
TTAATTGATTATAAACCAAACGGAACACTGAGCATCATAAAACGTCTTAA
CTACATTCAGAATAAAGGCTGAGTAGATTCTTATTCCTAGATAGGCTTTG
TAACGGTCTGTCCTGGTTAAGAGCTATTTCTTTGAAGTATTCAGACCAGT
TTTTCAACGAATATTAGGAACAAATCTCCTGTCAGAACTTACAGTTCAAA
TAAACTTGATGCAAAGATGACAACATGTCTCGTTCGTATGATTTAATTGA
TTATAAAACTAACGGAACACTGAGCATCATCGGTTGGTGAATCGTCATTG
TAAATAGTACGAGTTAAGATTTTAAACATTGGTATTTAATTTAAAAAGGG
GGTTTGAGACCCCTTCGCACGGTATGCGTCCATCTCTTTTTTTGTGTTGT
ACCTAAAGGGAACTTTTTTTGGCGGGCAGCAAATATCCATTAAAAAAAAT
TATTTTGGCAAATAGTGAATTTTTTTAATTTTGGCGGGAACTAATTTTGG
CGAATGACAGCGTAAATTTGTTCAATTTTGCCTTATTTTGAGATATTTTG
AATTTCAGGGGTAATTTAGGTAAGGAAAAAAAATTACCTAAATTCGCCAA
ATCCGCCAAAATTAGTTCCCTTAAGGTAGTCAGTCACAAGTGTAGAGCTT
GAATATTTGATTGTATGTAAAGCAGAATCTAGGATAGTTTTGAAGTTTTC
TACATTTTCTGTAGTGCTTTATTTGAGTTTGACTTGAACATTTATGAAAC
GTTTTATTTTCTCCATGCAATGATGATCATCCCCGTCACATGAAACTCTG
TTCTGTGTTGCAATATTTTCAAAAATTTGCGACTGAACAAGGATAGTTTG
TGATTTAGAAAGAGCGTGATCTGAGCTTAAATGAATATGCTTCTTACATG
TTGAGCAAATTTACGATTGCTATTGAAAATTTTATCATTTACTTTACAGG
AAGCTGAACTTGCTGTTGCGGCCCAACTCCAAGGACCAGTTCTTCCCATC
ATCCAAAGCAAACCAGTCAACAAAGCTCGTGTTATCACCGACGAAGAGAA
GAAATTATCCGTCTTCCGTACCATGCGTGTTGCTCGTGCTAATGCTCGTC
TTATCGGTATCCGTGCTAAACGTGCACGTGAAGCTGAAGCCGAGGCTGCA
ATGAAAGCTAAGAAATAAATAAATTCTCTTCTCTTCAAAAAATTACATTT
TTGTCAGTTTTTGTCTCTTCCTTTGTTTTATCCATAAACTTTCGATAAAA
TGACTCACCTTATAGTGTGGTTGTAGGGGATTCTTTCCTGAGATGTAAGC
ATCCTATAGAAAAGTCTGGAGAAAGTTTCAGGTAGATCTTATTTTTGGAC
CTACCGGGAGGTCCTTTAATTTGACCGTTGTCCGTTCGTCTGTTACAAGC
TTTTCTCGGGATTGGCTCATTAGTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062246-exon-scaffold_362-1575043694:367173..367839 | TCONS_00062246-exon-scaffold_362-1575043694:367173..367839 | Clytia hemisphaerica | exon |
| TCONS_00062246-exon-scaffold_362-1575043694:359661..360140 | TCONS_00062246-exon-scaffold_362-1575043694:359661..360140 | Clytia hemisphaerica | exon |
| TCONS_00062246-exon-scaffold_362-1510915933:367173..367839 | TCONS_00062246-exon-scaffold_362-1510915933:367173..367839 | Clytia hemisphaerica | exon |
| TCONS_00062246-exon-scaffold_362-1510915933:359661..360140 | TCONS_00062246-exon-scaffold_362-1510915933:359661..360140 | Clytia hemisphaerica | exon |
| TCONS_00062246-exon-scaffold_362-1491911889:367173..367839 | TCONS_00062246-exon-scaffold_362-1491911889:367173..367839 | Clytia hemisphaerica | exon |
| TCONS_00062246-exon-scaffold_362-1491911889:359661..360140 | TCONS_00062246-exon-scaffold_362-1491911889:359661..360140 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:359661..367839 - |
Blast
BLAST of TCONS_00062246 vs. Swiss-Prot (Human)
Match: RL13 (60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4) HSP 1 Score: 211.846 bits (538), Expect = 5.805e-66 Identity = 119/189 (62.96%), Postives = 141/189 (74.60%), Query Frame = 2
Query: 263 NNVLPNSHYHKHWQNYVRTWFNQPGXXXXXXXXXXXXXXXIAPRPVAGDLRPVVRCPTFKYNTKVRMGRGFTLEELKAAGIAANKARTIGICVDHRRKNKCTESLQANVQRLKEYQSKLIVFPRKQSKPRKTDSXXXXXXXXXXXXGPVLPIIQSKPVNKARVITDEEKKLSVFRTMRVARANARLIGI 829
N ++ H+HK WQ V TWFNQP RK RRR ARQ +A IAPRP +G +RP+VRCPT +Y+TKVR GRGF+LEEL+ AGI ARTIGI VD RR+NK TESLQANVQRLKEY+SKLI+FPRK S P+K DS EL +A QL GPV+P+ KARVIT+EEK F ++R+ARANARL GI
Sbjct: 6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGI 194
The following BLAST results are available for this feature:
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