TCONS_00062236 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062236
Unique NameTCONS_00062236
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1645

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062236 ID=TCONS_00062236|Name=TCONS_00062236|organism=Clytia hemisphaerica|type=transcript|length=1645bp
AAGCTTCTAAAGTACAGTGAAAATAATAAACAATTTGATGCGAATTCTTT
TGATATTATATTGGTATTGAGTGGCAGAGAAAAATGTTATGATGGGAAAG
taattttgaaagactttgaaaacattaatcaaaaagaaaagaattggTAC
AAAATTGGTACAAAAAACAGAGAGCACAACCTTTgtttaaaatcataaaa
taaaattttttcgcCATCATCAGTGATATTGGTGTTAGGACCAAAATTTG
TATTTGGACCAAATTATGTTTGGATCGTTTCAAAAAACGAGCAGTGTTGA
AAGTCTACAAAAGATGATTCTACGCGAGGAAAAACAACGAAAAACGAATG
CTGAAAGACCGAATAAACTTAACATCAGATCAAAGAGCACAGACAGTGGA
TCGGATCCAGACGACAGCAACAATAACAATACAATAATCACACAACAATC
TGAACAAACCAAGAATACCAAACCACAAGGACAAATTCGCGCTGGTCTAC
GTTCATTATACCTTGATAAACCAGTCCGTGTGAAGTTCGTCAACCACTCG
GGAAAAGAGGTTCAGTTATATTGGATCAACTTTGTCGGtgaatgtgaaaa
agctttcaaaattttagatgGTAAATCTGAAGTCGTTGACACATTCGAAA
CTCATCCTTGGATTGCAGCAAATGCCAGAAATAAGAAGGTCTCACACGCC
TTTACCATCGGAAATAATTTGGTTTATTACCCTTTGATGGGACCGAATGG
AGGCAAATATGCAGTCGCTGAAATTCGAAAAGCACCAGAAAAACTAGCAG
ATTTAATATCGCGACCAAATGGTACAGAAGTCTTGGTAAAATTTATAAAC
AGAACGTCGAGACCAGCTTATCTTGAAATGGTCAATCCAGAAGGCGATAG
AGAATTGAAACACACGTTAGAAGCAGGACAAAGTTGGACGACGTGTACAC
AAGAAAAGACGTTCTGGATCACCACTATGGATCAAGAAACGGACGAAGGA
CTCTTACTGAACTACGGATGGTATTATTCACCTGTCAAAACCAGAATGAA
GAAAGAACGGTGCTATATCACTGATTATATATAAGGAGTGGGCCAGCAGC
GAAGAGACGTAGATACTAACAACAACACAGCACATACGTAAAATTTATCC
ATTGAGAATAGCAAAAGAGAGAGGATGGAGAGAGAACTTGTGTCTAACAA
AAAGATGAAACTCCTCACAGCAAGGTCAACAACCATGATGAATGGATACT
TTGTATAGCTGGAGTGAAAATTCACCagaaaaaagcttcaaaatagTTAG
AAACATCTAAAGGAAAAACTATTAAGTGACATCACGAGCATCCAAAAACA
AAGCTCATGGTTCAATAGTCAAAATActaataaattttgaaagtcaacaa
aatccaaatttttattataaaaccGTAATATTATTTAAAAGATATCAAAT
ATTATACGTAACGATTTTCTGCAGGTTTTATCAGGAAACTGTGTTACGAT
ATTTATTTAAAACATCGTTACTACAATACTTTTTGGAAGCAATCatcatt
ttgtaaattttttctatatttttttgatagttgcttttcttaaaaaaaaa
agaaaaatttgtatttttctttcctATTAAGAATCGGGAAATAAA
Run BLAST on NCBI

transcript from alignment at scaffold_362:244122..249075-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062236 ID=TCONS_00062236|Name=TCONS_00062236|organism=Clytia hemisphaerica|type=transcript|length=4954bp|location=Sequence derived from alignment at scaffold_362:244122..249075- (Clytia hemisphaerica)
AAGCTTCTAAAGTACAGTGAAAATAATAAACAATTTGATGCGAATTCTTT
TGATATTATATTGGTATTGAGTGGCAGAGAAAAATGTTATGATGGGAAAG
TAATTTTGAAAGACTTTGAAAACATTAATCAAAAAGAAAAGAATTGGTAC
AAAATTGGTACAAAAAACAGAGAGCACAACCTTTGTTTAAAATCATAAAA
TAAAATTTTTTCGCCATCATCAGTGATATTGGTGTTAGGACCAAAATTTG
TATTTGGACCAAATTATGTTTGGATCGTTTCAAAAAACGAGCAGTGTTGA
AAGTCTACAAAAGATGATTCTACGCGAGGAAAAACAACGAAAAACGAATG
CTGAAAGACCGAATAAACTTAACATCAGATCAAAGGTAGATCCTTGATAC
TTGTAAAAACATCTTAAATTATATAAGAACAGCAAGGCTTAAAAACGCCA
AAAAAATAAGGATAATATTGGGAGCAAACCTTAGCCTAAAAAGGCTGAAA
TTTAGGCAAATTAAGAGACAAATTAGTAAAAATTCGGTATTCATATCAAT
TAATCTTGCTCTGGAACTATAAATGGCCGAATCTCAACTCTTCTAATGCG
AACCTATATTCTATTAACACTCTCTGTTCTCGAACTAAAATAAAATTCTT
TCTTTAATTCCAATCTTACTTTGGTTCGAAAAACAATTCTTGGCTCCTTG
AAGATGGAATTAGAGATGGAGAGATAGAGAATAAACTATAATTTCAAGGA
GGAACCGCCAGCCCTGGTTTAAAATAACTGTTTGACCAGCTTCTATCTTT
TTCTTACAGAGCACAGACAGTGGATCGGATCCAGACGACAGCAACAATAA
CAATACAATAATCACACAACAATCTGAACAAACCAAGAATACCAAACCAC
AAGGACAAAGTAAGGAGAAATTTTTTTACATGGTTTCGGCCCATTTTTAG
TTGCCAAACGATTTAGGTCCCCCTTGAGTTAATGACTTTCGGGGTAGCTT
GGGAAAACAGTTACAAACAGTTTCGTAGCCGCAGTCAAGAGCCTTGACTA
AAACAATTAGGTAGTACCCCATGAACAAGACAACCCTAAAAAATTGCAAA
CTTTTGGTAGCCCCGAGCCCCATACCTGGTTCCCTTTACAATGGAGTTTA
TTAATCTAGACTAGTTTTGATTTTGAGTATTTTCTACCTGTTGCGGAGTA
AAAAGGTGAAATATAATGTAAGCTCACCGTTACACTTTGTAATTGAGACC
GCCGCTTCCAGGAGATTGATTTTCTTGGAAACCTGTAAAAAAATTAAAAA
GTTGAAAACCAGTTCATTACTATTAATTTCCCTTTTAGTTCGCGCTGGTC
TACGTTCATTATACCTTGATAAACCAGTCCGTGTGAAGTTCGTCAACCAC
TCGGGAAAAGAGGTAAGCGAGTCATATTTTTGTTGCCACCTTCAAAATTG
GAATGTGCATCTGAATATTTTTTTAAGCCCACAGCAATTTTCACAGCTTT
AGCCTAATCTCAAAACAAAACACCTTCTTTTCCAGACCAAAATCTCTACC
GTTTTGAGCCATAGTCCGGCTTCAACTGTTTAAAGAAGATTGCCGGTGAG
GGGTCCATTTCAGACTTAGTTTTAGAGTTTGGCAATCACAACTAGGCTTA
CCAGACAGCTCTGTAAAATATCACCTACGAAGATATAGCTCTGCAAGGTT
AACAACCTCACCTAACTTTACTTTTCTTCAAAAAAAAAAATGAAAAGACA
AAATAATACAAACTGTCAGAAAATGTGTTGGTTTGAATTTGAAATGGCTG
GTGGTCATCGAATGGTTCTAATATTGTTTTGAATTCCCGCTGTTAACGCC
TGTAAAAATAAAAATGATGGAATAATTACACGCTTTATACACAACGCGTG
CATACTATACGGGAATTAAAATTGTCCAGATTTCTAGCCTATACTTAAAC
AAATCCCCCTAAATCCCCCCGAAAAGAGTTCCGCGTAGGGATAGGACACG
TCACTTCGCTAAAGCAGGCTAAAGTAGTGTCTTGGGCTACAAATTTACTT
TATCTCTTATCTCACATCTTGGTTCTTATTTATTCATTGTTTTCAGGTTC
AGTTATATTGGATCAACTTTGTCGGTGAATGTGAAAAAGCTTTCAAAATT
TTAGATGGTAAATCTGAAGTCGTTGACACATTCGAAACTCATCCTTGGAT
TGCAGCAAATGCCAGAAATAAGAAGGTCTCACACGCCTTTACCATCGGAA
ATAATTTGGTTTATTACCCTTTGATGGGACCGAATGGAGGCAAATATGCA
GTCGCTGAAATTCGAAAAGCACCAGGTAGATTTTATCTCCCACCACTGAT
TTTGTTATTTTCACTTACTGAAATATTGAAAAAAAAAAAAATTTTGGTCA
TTGTTCCGTTTTACTGAAAAAATTAAGATACATGGAAATTGAAACTTAAA
ACAGCTAGTAACCTACAAACAATTAAAATGAGTAAATCCCTCAGGTGTGG
AAAGTACATTTGACACGTCCTTGGACCATGAACTATTTTTCCTGTGCTAA
GAGTACTATTTTTCCTGTGCTAAGAGTACAATTTTTAACGGATTGGAATT
ATATTGCAATGTACGATAGTTTCACCCTAACTGAAGAAATAATTAAAAAA
GAAAAAGTCGCCTGATTGAAGAATTCCAGTTCAGTGAAATTAGATAACCT
TTTTCTTGTTTAGAAAAACTAGCAGATTTAATATCGCGACCAAATGGTAC
AGAAGTCTTGGTAAAATTTATAAACAGAACGTCGAGACCAGCTTATCTTG
AAATGGTCAATCCAGAAGGTATTTATAATGACTATATACTTGCATTGACT
TAGTAGACCTTGAAAAACTATGCACTTAGTAACCTCCGATTGAATTACGT
TAGATAACATGGCTATTGCTAGAAATTTCGAAGGCTTGAGTCTTGAAACT
TATGTATATGGGCTTTCCCAGAAAAAAACCGTACACCCCCTGTTGAGGAG
GTAAATTTCCGTTCCTAGGGGGTAAAGTTTGAAATGTTGAGGAATTCCAT
AGGGTTTACAAAAATCCATTAAAAATAAGCGGAATTCCATGGGGTATTGT
TTGAAAACCCACAAAAATTTGGAACTCCAAAGGGTTTTGACCCTTAAGTT
TCTTGGAATTCCAGGGGTAGCTCATACAAAAGGTTTGACCTCCTCAACAG
GGGGTGTACGTTTTTTTTCTTGAAAAGCCCTGTGGTTTAAGAAGAAATTT
TTCTAGACCTTTATTTTTAAAATTGATTAGGCTCAGACTCCGGTTGTGTT
CTTGTTTTAAATTGTTCTTATAAAAAAGCGTTACCACAAAAATAGGAACT
TTTTTTAAATTAAGACCTTTAAAGTGCTTAAACATGCTTTATAAGGATAG
CACCTTATAATCAACGATATCTTCTTTTTGACTAGGCGATAGAGAATTGA
AACACACGTTAGAAGCAGGACAAAGTTGGACGACGTGTACACAAGAAAAG
ACGTTCTGGATCACCACTATGGATCAAGAAACGGACGAAGGACTCTTACT
GAACTACGGATGGTATTATTCACCTGTCAAAACCAGAATGAAGAAAGAAC
GGTGCTATATCACTGATTGTAAGCTCCTCTCTAAGAACGCCCAAAAATTT
TGAAGCCTTTAGATGCTCTTAACTTTTTGAGTTTTAAGCCTAAAAATGTT
CTTAACATGTTCTTATTTTCTCCATTTTTTGAGCATTTTTGCCCATTTTT
CTAAGAAACGGCTGTTTTAGTGTCAGCAAAGCCTTAAAATGTCCTTAACT
TATTCTTAACATTTCGGCCATCGAAGCCTCAAATGTTCTTAAATGTTCCT
ATAAAGAAACTTTTTCATTGGAGAATGAGCAGAAGCCTCGGACGCCCTTT
AATCCAAACCCGGTCAGGTATGGAAGCCTGGAAGGTTCATCATGTTAGCT
CCTTCTAAAACAATACATTATCAGTTAACTCTGTTTTATCTCGAAATATT
TACTTGGATCTTCTGACCTTATCTGAAAACTTGGCAGTTTTTGGGAACGC
GACAAAAATCCCAACAGTTTTGACGATACCTCCAGTTTTGGAAGAACTCG
CATGATGACACTTCTTGGCTTATATACAAAAAGATGAAAGATGTCTCCTT
TAAATGAAAAGAGATTTCATTGCCCAGGTTATCGTCTAGTGTTTATCTCA
GTAGGGAGGGAAACCTACGTGCTTGTGACGCTTATGACTATACGCAACAC
AATCAAAACTGGTTTCTTTTTTATCTTTAGGTTATATTTCTTTCCATAAA
AACCCAAAAAGTATACGAAAGACCTTTAGCCGATCATTACAGCGCTTGAA
ACATTGTTTTCAAATAAGTTGTATTTCTTTTACAGATATATAAGGAGTGG
GCCAGCAGCGAAGAGACGTAGATACTAACAACAACACAGCACATACGTAA
AATTTATCCATTGAGAATAGCAAAAGAGAGAGGATGGAGAGAGAACTTGT
GTCTAACAAAAAGATGAAACTCCTCACAGCAAGGTCAACAACCATGATGA
ATGGATACTTTGTATAGCTGGAGTGAAAATTCACCAGAAAAAAGCTTCAA
AATAGTTAGAAACATCTAAAGGAAAAACTATTAAGTGACATCACGAGCAT
CCAAAAACAAAGCTCATGGTTCAATAGTCAAAATACTAATAAATTTTGAA
AGTCAACAAAATCCAAATTTTTATTATAAAACCGTAATATTATTTAAAAG
ATATCAAATATTATACGTAACGATTTTCTGCAGGTTTTATCAGGAAACTG
TGTTACGATATTTATTTAAAACATCGTTACTACAATACTTTTTGGAAGCA
ATCATCATTTTGTAAATTTTTTCTATATTTTTTTGATAGTTGCTTTTCTT
AAAAAAAAAAGAAAAATTTGTATTTTTCTTTCCTATTAAGAATCGGGAAA
TAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039011XLOC_039011Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062236-exon-scaffold_362-1575043694:248691..249075TCONS_00062236-exon-scaffold_362-1575043694:248691..249075Clytia hemisphaericaexon
TCONS_00062236-exon-scaffold_362-1575043694:248167..248266TCONS_00062236-exon-scaffold_362-1575043694:248167..248266Clytia hemisphaericaexon
TCONS_00062236-exon-scaffold_362-1575043694:247664..247737TCONS_00062236-exon-scaffold_362-1575043694:247664..247737Clytia hemisphaericaexon
TCONS_00062236-exon-scaffold_362-1575043694:246751..246979TCONS_00062236-exon-scaffold_362-1575043694:246751..246979Clytia hemisphaericaexon
TCONS_00062236-exon-scaffold_362-1575043694:246258..246362TCONS_00062236-exon-scaffold_362-1575043694:246258..246362Clytia hemisphaericaexon
TCONS_00062236-exon-scaffold_362-1575043694:245458..245640TCONS_00062236-exon-scaffold_362-1575043694:245458..245640Clytia hemisphaericaexon
TCONS_00062236-exon-scaffold_362-1575043694:244122..244690TCONS_00062236-exon-scaffold_362-1575043694:244122..244690Clytia hemisphaericaexon
TCONS_00062236-exon-scaffold_362-1510915933:248691..249075TCONS_00062236-exon-scaffold_362-1510915933:248691..249075Clytia hemisphaericaexon
TCONS_00062236-exon-scaffold_362-1510915933:248167..248266TCONS_00062236-exon-scaffold_362-1510915933:248167..248266Clytia hemisphaericaexon
TCONS_00062236-exon-scaffold_362-1510915933:247664..247737TCONS_00062236-exon-scaffold_362-1510915933:247664..247737Clytia hemisphaericaexon
TCONS_00062236-exon-scaffold_362-1510915933:246751..246979TCONS_00062236-exon-scaffold_362-1510915933:246751..246979Clytia hemisphaericaexon
TCONS_00062236-exon-scaffold_362-1510915933:246258..246362TCONS_00062236-exon-scaffold_362-1510915933:246258..246362Clytia hemisphaericaexon
TCONS_00062236-exon-scaffold_362-1510915933:245458..245640TCONS_00062236-exon-scaffold_362-1510915933:245458..245640Clytia hemisphaericaexon
TCONS_00062236-exon-scaffold_362-1510915933:244122..244690TCONS_00062236-exon-scaffold_362-1510915933:244122..244690Clytia hemisphaericaexon
TCONS_00062236-exon-scaffold_362-1491911889:248691..249075TCONS_00062236-exon-scaffold_362-1491911889:248691..249075Clytia hemisphaericaexon
TCONS_00062236-exon-scaffold_362-1491911889:248167..248266TCONS_00062236-exon-scaffold_362-1491911889:248167..248266Clytia hemisphaericaexon
TCONS_00062236-exon-scaffold_362-1491911889:247664..247737TCONS_00062236-exon-scaffold_362-1491911889:247664..247737Clytia hemisphaericaexon
TCONS_00062236-exon-scaffold_362-1491911889:246751..246979TCONS_00062236-exon-scaffold_362-1491911889:246751..246979Clytia hemisphaericaexon
TCONS_00062236-exon-scaffold_362-1491911889:246258..246362TCONS_00062236-exon-scaffold_362-1491911889:246258..246362Clytia hemisphaericaexon
TCONS_00062236-exon-scaffold_362-1491911889:245458..245640TCONS_00062236-exon-scaffold_362-1491911889:245458..245640Clytia hemisphaericaexon
TCONS_00062236-exon-scaffold_362-1491911889:244122..244690TCONS_00062236-exon-scaffold_362-1491911889:244122..244690Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:244122..249075 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.12413	0	0	0	6.35974	2.62525	2.94648	3.47312	16.5437	17.4407	14.4996	13.6809	3.50283	1.82963	5.57206	3.23489	0.6915	0.793107	1.20491	1.50292	0	0.140807	0	0	0.380495	0.103569	0.322654	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062236 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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