TCONS_00062233 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00062233
Unique Name	TCONS_00062233
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2376

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_362:228433..235384-

transcript sequence

>TCONS_00062233 ID=TCONS_00062233|Name=TCONS_00062233|organism=Clytia hemisphaerica|type=transcript|length=2376bp
tatttttgttgcgataattttttttaaagagactaAACAAAAGATTGTTT
AtgttgtttttaaaacattaaaaaatggcaGCTGTGTTcgaactaatttt
tgcaaaacgttcgaaaaacTAATTAGTTGTTTAGCATGGTCTATTAGTTT
CTTTGCACAATACTCAATGAGAAAGCGTAAACAGACCACTTTAGAGATCA
TTTGCTTGTGCTCAATATGAGCTTGTTTCCTTGCGCATGCGTAGTGCAGt
ttcttttttccaaaacaagCGTGCGGTTTCGAATGTCAGGGAAAACCGGC
TTTTTCGGCAAATGGAAATTTAGCGAAACtttcatttattttaaattgaG
ATTTATTTTAACTTGGTAAATTATACTGTAAAAGAATGCATTGGTCTCAA
GGCCTTGTGTGCCTGCTATTTGCCGTCTTGAGTTTCGGCGTTCAAGAAAC
TTCAACACAGATGCAAATGGGAGGAGATATGAATAGAATACTTCCAGATT
GGCCAAAGATTGGTGACAGAATCACACAACCCTTTCTCGATCAATTGATG
GTCAGTCAACTGTTGGAACAGAATCTGACTCTCGGATTCTTCTTAAAAGG
ACTTAACGGACCACCAGGTCCTCCAGGACCACCAGGACCATCTGGAGAAC
CAGGAGCCCCAGGTTTACCCGGTGCACCAGGAGCCCCTGGACACGTTGGT
GAAGATGGTGCCCCTGGTCCAATGGGACCACCAGGCTTATCTGGAGGCCC
TGGTATGCCCGGATACCCAGGAGAGAAAGGAGATCCAGGACCATCAGGTT
TACCTGGATCCGCCGGTCTGCCTGGTGCCCCTGGTCTACCTGGACCACAG
GGATCAGCTGGAGATTCAGGACCTGAACCAATCAAACCGGAGTTCACTGT
TGCATGCGAAGGACAAAAACTTTGGATTCAGTGTCAACAATACGAATTGA
TCAAGATCAAAGAAGCATACTGGGGTCGTGAGGACCACGTTACCTGTTCT
GATACACCGGCCGGTCTGAGCCGTGAAGTCTGTGACGCCAACAGTGATAA
TGCCTTCACAAAGGTAGATGCACAATGCAAAGGTCAACAAAATTGTGAAG
TTGTCGCCTCCAATATTTTCTTTGACGATAACAGTTGTGGAAACGTttat
aaatatttgaaagtGAAATACGAATGCGAGGCTGACCAGCAGAACAGCAT
GGACGTCTTGAAAGAAGGCGGTCGCCGACGACGAAAGAAGAAGCGTGACA
CCAAAGAGAAGCGATCCTTCAGGGATTCATAAATAGAACTCTCTCACTTT
CTCCTACAAAATGTCCATGCGCGcaaaactttctatttttttgacGAAAA
CAAAACTTCTGAAGACTTTTTTTACAGGACTTAATAGAACCAACTTTATG
GTGTATCATCGAAACCATGGATcagcaaaatttattttttgctcaaagcA
GTATAAATATTATCGACGGTAGAGAAGTGTGGTGTAATATTTAGATTAGG
CCATATTACTTGCTATGTCTCCAAGTTATAGAGTTTAAAAActaaacaat
atatttttctatgAATTTTATATTCTATTTTGTTATGAAAATACTGGGAA
CTATTCTATATGCATAAGCAAACGTTGCAATTCTTTATCATCTTCCTCGG
CCAAAATTTACAGTAAATCAAGCATCTTCCTATTTGCGGGAGAAAGCAAT
AAATACTAGTACAGTAGCTTAAAGGATACTGTAGATTGTCCTACATCTTA
GTTATACCCTTCTTGTTTGGCTAAAGTCGCAAAATTTCATCAACAAAAAC
AGAAATCGGAATTTCAGGATTTCATAGTCGCTGTTTATTGCGATGAGATG
GTGGTCAGAGGATAAGGAAATTTTAGACTGGGCAATTTAAAGTATCGTTT
TTCAATTGTACATATCTTCAAAACTGAAACCCAAAACAATAAATTTGACA
AACACAAGTTTCTTTACAGATATGATAGTTTACaaatttttatagcaaaa
tttgatataatatttttttacatatttttttgaaaaatgtgactTTGAGT
GCCCTCGTTATCCCTTATGAGTTCAGAATGGACGGACTAAAAACCATACG
GGGTACACACCCAAAGAATATGCAtttataaagtaaaaatttgatatttt
tataacTGATAAATTATTattccatatttacaaaaaaaatatactcTTGT
ATTTTATgaagttatatttttttaaatttttttggaattttgtgtttttg
ttgtaaaattttgtgCAGTGACATCCCTTACTATATagatttatataaaa
aagagtgtagaaattaatttggtaaaatttgaaattaatccCGTCTACTC
CTTTTggaattgacaaaaaatctcAG

Run BLAST on NCBI

transcript from alignment at scaffold_362:228433..235384-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00062233 ID=TCONS_00062233|Name=TCONS_00062233|organism=Clytia hemisphaerica|type=transcript|length=6952bp|location=Sequence derived from alignment at scaffold_362:228433..235384- (Clytia hemisphaerica)
TATTTTTGTTGCGATAATTTTTTTTAAAGAGACTAAACAAAAGATTGTTT
ATGTTGTTTTTAAAACATTAAAAAATGGCAGCTGTGTTCGAACTAATTTT
TGCAAAACGTTCGAAAAACTAATTAGTTGTTTAGCATGGTCTATTAGTTT
CTTTGCACAATACTCAATGAGAAAGCGTAAACAGACCACTTTAGAGATCA
TTTGCTTGTGCTCAATATGAGCTTGTTTCCTTGCGCATGCGTAGTGCAGT
TTCTTTTTTCCAAAACAAGCGTGCGGTTTCGAATGTCAGGGAAAACCGGC
TTTTTCGGCAAATGGAAATTTAGCGAAACTTTCATTTATTTTAAATTGAG
ATTTATTTTAACTTGGTAAATTATACTGTAAAAGGTTAGTAATTTTTGTT
TTTTTTGTATTTTCAAGGTTTTTGTGTCTTTTTGAAACCTTTTTGAAATC
GAATGTTTTGAAATAATAAGATTGTTCGAATTATGCTCAAAGTGTGTATT
GGTTAAGCATAATTGTTTATAGAACAGTAGCTTCCGATTGGCTGAAAAAT
GCGCAACGAATCAAACAGAAAATTGTATCAGTGAAGGATTTCAAAAAAAG
AAAAGATTGGTTCGCTTAAAAAAAATAACTTGGTGAATAATTTTGATGAG
TTTTTAAGATTGTCAACTATAAAAATAATCTATCGAACTTCGAGGTGAGC
TTTGTTTTGAAGTTTGTTTTGAAATTTTTTTATTGTCGTTAATAAACAAT
AGCAATCAAAACAAAGGAAGACAAAATAGAGCTGAATTATTCCAATTCAT
TAACGGGATGATCTAATCAATAGAGCCACCTGCTTTCAATAGAATTCTAT
TGTTAAATCATTCGAATTTTTCTCAATCGAATTCTGTCAGTGGTGAAAAT
GAAAACAAGCTATTAGCGTTTACTGTTGAATTCATGCTATGCTTCCATTA
TTGAAGAAAAAAACTTTAATTTTTTGAATGCATGCGAAGGAGGCATAGAC
AGACATAGCCCAAAATAATTAACATCGCTAATTAATTTTTTGGGGCTTTT
GGTTTTGTCTCTTTTGACATAACTTGTTTTAATATCTTCTTGTGTATATA
TTGTATAGAAAATTAAAATTTATAAAGTAAGTTGGCATTTATTTTAACTT
TGATGGTTGTATTGATGGATTTTTTTTTGGGATATTATTTTTCTCATTTG
ATCGGATTCGATTGCCAATGTTTTTGTTACTTTCGATGATTTGGTTTCCC
AGCTCATAGTTAAAAGATTATTATAAATTTATTACCTGTCCTGCTTTAAT
CATTTTGGCTTCTGGTAGAATTGTTTTTATCATTGGGTCAAACTCCCGTC
AAACTTTAATAAAATTTATATTGAATACAAACTTCAACTTCAACCTCTTC
TAGCCTAAATATTCCTTGAAATACATAACAATCAAGATATTTCACCCCCT
GTAAAATTATATTTTCTCAATGCCATGGCTTTTTTATGATGAAGGATTCA
GGTTCTATAATTTTGCATAAAAATAACATTGTTTTTTTCTCGTACCTTAG
AATGCATTGGTCTCAAGGCCTTGTGTGCCTGCTATTTGCCGTCTTGAGTT
TCGGCGTTCAAGAAACTGTAAGTAAATTCATTCTTAAAAATTGTTTCTTT
TAAAAACTTTTCTTCGTCTTTATTTTCGATATCCTAGGTAGATACAAAAC
TCAATATTTTCCATTTCCAAAAACCATTTTTATCTTCAAGAAGCAATCTT
TTTCTTTTTGAAAACTTATCTTTTATCTCCAGAAAGGGTCTTTCATTTTT
GTATCTACTTAAGAAAACCACGGTTAAGACACGCTAATTTGATACTCATT
GAATTACTAAAGTCCTAAAGTGAAATTAGTCTATGGTATTGTACCGAATT
CTTTTGGACCCAGACCTTTTTTCCATGAGATTAAGGTTGACAAGACTAGG
GTGTGTAAATTAACTTTTTTACATTTACAACATAACAAACACATACCTTT
TACTCATAACATAACATAACATCACTTGACAATATCTTTACACATCTACC
ATCACATTACATTCACTGACCACCATTGAGATTTGACCATGACACCAACA
TTGAGGTATTTACAAAACAGCACCTGAAAAATAAGATACACAGATCTGTA
AATTCTCTTTGTGGCTTTTCTTTTTTGTTTTTAACGGCTTTAGACACTTA
TAAAACAAGATACTCTATATGTATATAGATTTTATTGGGGAAATTTGGCA
GATTGCGTATTTGCGACCTTTGGTTTATAAACTCCAGTGAACCGAAACTT
AATTAGTCGTTAAGATAGCAAGGGTTAAAAAACACGGAACATAGAATTTA
CATAGAACAGACAGAGAGACAGAATAACAGTATTTAAACAAGATAACAGT
ATTTGAACATAACAAAAAAAAACAGACCAGACCAGACCAGACGATATACG
ACCGTTCTCCGAAAATGGAGAAACTAAATCACAAACGAGAAGACAAGACA
AGGAACTGGAACAAACCTACGTACAAGAAAAGAAAAACTTTACTCAACAA
AGACATCGACAACCAAAATGATATCTGATTATCGATAAACAATGCCAAAA
TCTTATCCATTATAGCAAGAACAACAAGCCAGAATGTTACCAGATTGGCC
AAAGATTGGTGACAGAATCACGCAGCCTTTTCTTGATCAACTGATGGTCA
GTCAACTGTTGGAACAGAATCTGACACTCGGATTCTTCTTGAAAGGGCTA
AATGGACCACCAGGTCCTCCTGGTCCACCTGGTTCCCCTGGAGAACCTGG
TCCTCCAGGTTTACCCGGTGCACCAGGAGCCCCTGGACACGTTGGTGAAG
ATGGTGCTCCTGGTCCAATGGGTCCTCCTGGACCATTGGGTTCTGCTGGT
GTCCCCGGTTTCCCTGGAGAGAAAGGAGATCCAGGTGCAACTGGTTTGCC
TGGATCTGCAGGTCTTCCGGGTGCTCCTGGTTTACCTGGTCCTGAAGGAT
TGGTTGCAGAAACCCGTGATAATGTTGCAGTACAACTGAAACCAGAGGTG
AATACTTTGTAGATTCTTACCCTAATTTAAAAGAATTTCATTTTGAAGTC
ATTAATCAGATTTATCTTGCATTTTTATCTGGCATCTTTTAGATTTTGAT
TTCATACAATTATTTTGATAAACTTATACGCCAAAGTTCTAGTTTTGACT
TGATTGAGGGCAAAATTGATGATAACTCTTGGATTCATTATACATGAAGA
ATGATGGAAGTATATTTTGATGTATCTTTTTCTTTTCCAGAACTTCACAG
AGAAATGCGAAGGTGAACGCTTGCTTATTGATTGCAAAACATATAACCAT
ATCCAAGTCAAAGATGTATACTGGGGTCGAGATGATACTTCCACCTGTCA
AAATGCACCAAACGGTTTAGTAGCTGATAAATTTTGTGATGGAAATCGTG
AAAATGCCAAACAAAAAGTTGCGGGACAATGTAAAGGCGAACAGGCTTGT
GAAGTTGTCGCCTCCAATATTTTCTTTGATGATAACAGTTGTGGAAATAT
ATTCAAAGTGTTGAAAATTTGGTATGAATGTGTACCCGACTCCAGTCCGG
GCACGGAAGATACGTACGGATCACGGCGTAAACGGAAGCGTGCAACCAAG
GATAAAAGATCTTTTCGAGATAGTTAGATTAAAATCAATGACCCAGAAAT
TCTAATACAAAAAAACCATCTAGTCAGTAAAATGAAAAAGTTTCATGTGC
AGAGAATGTATTATAGACAATTAACTAAATAATCTGCGGATGAGATTTTG
ATCAAATTATTGACTTGCTGACAACGTTGGTGTTTCTCAGTTATTGCCAG
AGAAGAGCAGAAAGGTGACGACATTGCTGAGAGAGTAAGACAAGAAAGAA
AGACGAGCTCCCACGAATTTTTTATAACAATAAAGCTTTTTCACATAAGA
CCTGTATATATAATATTTTAGTTTAACAATTTATGAAATGATTCCAACCT
TAGGTGTATGGTGTTCTTAACAGATAATTCTAGAGGGCAGAGTGTCTTGT
TTTATAAGGTCAACTTCCTAAATGCAAAGTTGATTGAAACCAATTTTTGT
AATATCAAATTAACAGTTAAGCCATAAACATCTTCTTTATTTTCAAGAAT
TTTAGAGTTTTTTAAGGTCATGGTAGAATGTCAAGACCACCATCGATCGC
ATCAAATAAAAGGGCGTAACCACCCTCCACCCTCCTCTCAATCATCAACA
CTCAATCACATCCACCATTCATACACCACAATCATTTATTCACTCAAAAT
CATAAGTCTTTTAGATAATCCACTCACACATTAAATCATAGTCATTTTAT
CTAGTTGTTAGAGAATTTTAGACCATTATATTTTTTTGTGTTCCTATTTT
TTTTTGTTTTCAAGACCTCATATATTTGTAATTTCAAATTTGACATAAAA
CTAAATTATCAATGACAAACAATGAAAATATCTTTCCAACTAATTTATTT
TTGAGGAATTAACAACTTTAACAAGGACTTAGAATGCTTCTCCTGTATTA
TTTCTAACTATATTTCTATTGTAGTAGTGGATAAATAAATGTATAAACTG
AATTCAATCAAGAATCGAACGAAATTAATTATTTTCTCCTTTTCTTTACT
TTTCAAAAACAACAGTCAACACAGATGCAAATGGGAGGAGATATGAATAG
AATACTTCCAGATTGGCCAAAGATTGGTGACAGAATCACACAACCCTTTC
TCGATCAATTGATGGTCAGTCAACTGTTGGAACAGAATCTGACTCTCGGA
TTCTTCTTAAAAGGACTTAACGGACCACCAGGTCCTCCAGGACCACCAGG
ACCATCTGGAGAACCAGGAGCCCCAGGTTTACCCGGTGCACCAGGAGCCC
CTGGACACGTTGGTGAAGATGGTGCCCCTGGTCCAATGGGACCACCAGGC
TTATCTGGAGGCCCTGGTATGCCCGGATACCCAGGAGAGAAAGGAGATCC
AGGACCATCAGGTTTACCTGGATCCGCCGGTCTGCCTGGTGCCCCTGGTC
TACCTGGACCACAGGGATCAGCTGGAGATTCAGGACCTGAACCAATCAAA
CCGGTGAGTAAGAAAAAAACGTTCTTTGTCAACATTCTTCGATGAAAACT
TTTACCGCCTTTAAACAGGATGTCGACCAGGATTGTATTTTGGCTATGGA
GATATTAGATTTAAGGTTAAAACNACCTGAACCAATCAAACCGGTGAGTA
AGAAAAAAACGTTCTTTGTCAACATTCTTCGATGAAAACTTTTACCGCCT
TTAAACAGGATGTCGACCAGGATTGTATTTTGGCTATGGAGATTTTACAA
TCTTGCACTAATCGATCTAGCATTTCAGACATTTCGTTTTCTATTTTTAA
CTAAAGAAACAATTAGACATACTGTAACCAAAATTCTAGCATTTTCTTTT
CAAACAACTTTTCAGGAGTTCACTGTTGCATGCGAAGGACAAAAACTTTG
GATTCAGTGTCAACAATACGAATTGATCAAGATCAAAGAAGCATACTGGG
GTCGTGAGGACCACGTTACCTGTTCTGATACACCGGCCGGTCTGAGCCGT
GAAGTCTGTGACGCCAACAGTGATAATGCCTTCACAAAGGTAGATGCACA
ATGCAAAGGTCAACAAAATTGTGAAGTTGTCGCCTCCAATATTTTCTTTG
ACGATAACAGTTGTGGAAACGTTTATAAATATTTGAAAGTGAAATACGAA
TGCGAGGCTGACCAGCAGAACAGCATGGACGTCTTGAAAGAAGGCGGTCG
CCGACGACGAAAGAAGAAGCGTGACACCAAAGAGAAGCGATCCTTCAGGG
ATTCATAAATAGAACTCTCTCACTTTCTCCTACAAAATGTCCATGCGCGC
AAAACTTTCTATTTTTTTGACGAAAACAAAACTTCTGAAGACTTTTTTTA
CAGGACTTAATAGAACCAACTTTATGGTGTATCATCGAAACCATGGATCA
GCAAAATTTATTTTTTGCTCAAAGCAGTATAAATATTATCGACGGTAGAG
AAGTGTGGTGTAATATTTAGATTAGGCCATATTACTTGCTATGTCTCCAA
GTTATAGAGTTTAAAAACTAAACAATATATTTTTCTATGAATTTTATATT
CTATTTTGTTATGAAAATACTGGGAACTATTCTATATGCATAAGCAAACG
TTGCAATTCTTTATCATCTTCCTCGGCCAAAATTTACAGTAAATCAAGCA
TCTTCCTATTTGCGGGAGAAAGCAATAAATACTAGTACAGTAGCTTAAAG
GATACTGTAGATTGTCCTACATCTTAGTTATACCCTTCTTGTTTGGCTAA
AGTCGCAAAATTTCATCAACAAAAACAGAAATCGGAATTTCAGGATTTCA
TAGTCGCTGTTTATTGCGATGAGATGGTGGTCAGAGGATAAGGAAATTTT
AGACTGGGCAATTTAAAGTATCGTTTTTCAATTGTACATATCTTCAAAAC
TGAAACCCAAAACAATAAATTTGACAAACACAAGTTTCTTTACAGATATG
ATAGTTTACAAATTTTTATAGCAAAATTTGATATAATATTTTTTTACATA
TTTTTTTGAAAAATGTGACTTTGAGTGCCCTCGTTATCCCTTATGAGTTC
AGAATGGACGGACTAAAAACCATACGGGGTACACACCCAAAGAATATGCA
TTTATAAAGTAAAAATTTGATATTTTTATAACTGATAAATTATTATTCCA
TATTTACAAAAAAAATATACTCTTGTATTTTATGAAGTTATATTTTTTTA
AATTTTTTTGGAATTTTGTGTTTTTGTTGTAAAATTTTGTGCAGTGACAT
CCCTTACTATATAGATTTATATAAAAAAGAGTGTAGAAATTAATTTGGTA
AAATTTGAAATTAATCCCGTCTACTCCTTTTGGAATTGACAAAAAATCTC
AG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039010	XLOC_039010	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_362	supercontig	scaffold_362:228433..235384 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.344854	0	1.87633	1.91203	0.240878	0	0.571928	0.663632	1.25087	0.807533	0.475281	0.955196	1.07303	0.880985	0	0	0.403295	1.29595	0.496981	0.300569	2.13569	3.07565	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00062233 vs. Swiss-Prot (Human)

BLAST of TCONS_00062233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00062233 (transcript) - C. hemisphaerica