|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062232 ID=TCONS_00062232|Name=TCONS_00062232|organism=Clytia hemisphaerica|type=transcript|length=2124bp
cttttttccaaaacaagCGTGCGGTTTCGAATGTCAGGGAAAACCGGCTT
TTTCGGCAAATGGAAATTTAGCGAAACtttcatttattttaaattgaGAT
TTATTTTAACTTGGTAAATTATACTGTAAAAGAATGCATTGGTCTCAAGG
CCTTGTGTGCCTGCTATTTGCCGTCTTGAGTTTCGGCGTTCAAGAAACTT
CAACACAGATGCAAATGGGAGGAGATATGAATAGAATACTTCCAGATTGG
CCAAAGATTGGTGACAGAATCACACAACCCTTTCTCGATCAATTGATGGT
CAGTCAACTGTTGGAACAGAATCTGACTCTCGGATTCTTCTTAAAAGGAC
TTAACGGACCACCAGGTCCTCCAGGACCACCAGGACCATCTGGAGAACCA
GGAGCCCCAGGTTTACCCGGTGCACCAGGAGCCCCTGGACACGTTGGTGA
AGATGGTGCCCCTGGTCCAATGGGACCACCAGGCTTATCTGGAGGCCCTG
GTATGCCCGGATACCCAGGAGAGAAAGGAGATCCAGGACCATCAGGTTTA
CCTGGATCCGCCGGTCTGCCTGGTGCCCCTGGTCTACCTGGACCACAGGG
ATCAGCTGGAGATTCAGGACCTGAACCAATCAAACCGGAGTTCACTGTTG
CATGCGAAGGACAAAAACTTTGGATTCAGTGTCAACAATACGAATTGATC
AAGATCAAAGAAGCATACTGGGGTCGTGAGGACCACGTTACCTGTTCTGA
TACACCGGCCGGTCTGAGCCGTGAAGTCTGTGACGCCAACAGTGATAATG
CCTTCACAAAGGTAGATGCACAATGCAAAGGTCAACAAAATTGTGAAGTT
GTCGCCTCCAATATTTTCTTTGACGATAACAGTTGTGGAAACGTttataa
atatttgaaagtGAAATACGAATGCGAGGCTGACCAGCAGAACAGCATGG
ACGTCTTGAAAGAAGGCGGTCGCCGACGACGAAAGAAGAAGCGTGACACC
AAAGAGAAGCGATCCTTCAGGGATTCATAAATAGAACTCTCTCACTTTCT
CCTACAAAATGTCCATGCGCGcaaaactttctatttttttgacGAAAACA
AAACTTCTGAAGACTTTTTTTACAGGACTTAATAGAACCAACTTTATGGT
GTATCATCGAAACCATGGATcagcaaaatttattttttgctcaaagcAGT
ATAAATATTATCGACGGTAGAGAAGTGTGGTGTAATATTTAGATTAGGCC
ATATTACTTGCTATGTCTCCAAGTTATAGAGTTTAAAAActaaacaatat
atttttctatgAATTTTATATTCTATTTTGTTATGAAAATACTGGGAACT
ATTCTATATGCATAAGCAAACGTTGCAATTCTTTATCATCTTCCTCGGCC
AAAATTTACAGTAAATCAAGCATCTTCCTATTTGCGGGAGAAAGCAATAA
ATACTAGTACAGTAGCTTAAAGGATACTGTAGATTGTCCTACATCTTAGT
TATACCCTTCTTGTTTGGCTAAAGTCGCAAAATTTCATCAACAAAAACAG
AAATCGGAATTTCAGGATTTCATAGTCGCTGTTTATTGCGATGAGATGGT
GGTCAGAGGATAAGGAAATTTTAGACTGGGCAATTTAAAGTATCGTTTTT
CAATTGTACATATCTTCAAAACTGAAACCCAAAACAATAAATTTGACAAA
CACAAGTTTCTTTACAGATATGATAGTTTACaaatttttatagcaaaatt
tgatataatatttttttacatatttttttgaaaaatgtgactTTGAGTGC
CCTCGTTATCCCTTATGAGTTCAGAATGGACGGACTAAAAACCATACGGG
GTACACACCCAAAGAATATGCAtttataaagtaaaaatttgatattttta
taacTGATAAATTATTattccatatttacaaaaaaaatatactcTTGTAT
TTTATgaagttatatttttttaaatttttttggaattttgtgtttttgtt
gtaaaattttgtgCAGTGACATCCCTTACTATATagatttatataaaaaa
gagtgtagaaattaatttggtaaaatttgaaattaatccCGTCTACTCCT
TTTggaattgacaaaaaatctcAG Run BLAST on NCBI transcript from alignment at scaffold_362:228433..235132- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062232 ID=TCONS_00062232|Name=TCONS_00062232|organism=Clytia hemisphaerica|type=transcript|length=6700bp|location=Sequence derived from alignment at scaffold_362:228433..235132- (Clytia hemisphaerica)
CTTTTTTCCAAAACAAGCGTGCGGTTTCGAATGTCAGGGAAAACCGGCTT
TTTCGGCAAATGGAAATTTAGCGAAACTTTCATTTATTTTAAATTGAGAT
TTATTTTAACTTGGTAAATTATACTGTAAAAGGTTAGTAATTTTTGTTTT
TTTTGTATTTTCAAGGTTTTTGTGTCTTTTTGAAACCTTTTTGAAATCGA
ATGTTTTGAAATAATAAGATTGTTCGAATTATGCTCAAAGTGTGTATTGG
TTAAGCATAATTGTTTATAGAACAGTAGCTTCCGATTGGCTGAAAAATGC
GCAACGAATCAAACAGAAAATTGTATCAGTGAAGGATTTCAAAAAAAGAA
AAGATTGGTTCGCTTAAAAAAAATAACTTGGTGAATAATTTTGATGAGTT
TTTAAGATTGTCAACTATAAAAATAATCTATCGAACTTCGAGGTGAGCTT
TGTTTTGAAGTTTGTTTTGAAATTTTTTTATTGTCGTTAATAAACAATAG
CAATCAAAACAAAGGAAGACAAAATAGAGCTGAATTATTCCAATTCATTA
ACGGGATGATCTAATCAATAGAGCCACCTGCTTTCAATAGAATTCTATTG
TTAAATCATTCGAATTTTTCTCAATCGAATTCTGTCAGTGGTGAAAATGA
AAACAAGCTATTAGCGTTTACTGTTGAATTCATGCTATGCTTCCATTATT
GAAGAAAAAAACTTTAATTTTTTGAATGCATGCGAAGGAGGCATAGACAG
ACATAGCCCAAAATAATTAACATCGCTAATTAATTTTTTGGGGCTTTTGG
TTTTGTCTCTTTTGACATAACTTGTTTTAATATCTTCTTGTGTATATATT
GTATAGAAAATTAAAATTTATAAAGTAAGTTGGCATTTATTTTAACTTTG
ATGGTTGTATTGATGGATTTTTTTTTGGGATATTATTTTTCTCATTTGAT
CGGATTCGATTGCCAATGTTTTTGTTACTTTCGATGATTTGGTTTCCCAG
CTCATAGTTAAAAGATTATTATAAATTTATTACCTGTCCTGCTTTAATCA
TTTTGGCTTCTGGTAGAATTGTTTTTATCATTGGGTCAAACTCCCGTCAA
ACTTTAATAAAATTTATATTGAATACAAACTTCAACTTCAACCTCTTCTA
GCCTAAATATTCCTTGAAATACATAACAATCAAGATATTTCACCCCCTGT
AAAATTATATTTTCTCAATGCCATGGCTTTTTTATGATGAAGGATTCAGG
TTCTATAATTTTGCATAAAAATAACATTGTTTTTTTCTCGTACCTTAGAA
TGCATTGGTCTCAAGGCCTTGTGTGCCTGCTATTTGCCGTCTTGAGTTTC
GGCGTTCAAGAAACTGTAAGTAAATTCATTCTTAAAAATTGTTTCTTTTA
AAAACTTTTCTTCGTCTTTATTTTCGATATCCTAGGTAGATACAAAACTC
AATATTTTCCATTTCCAAAAACCATTTTTATCTTCAAGAAGCAATCTTTT
TCTTTTTGAAAACTTATCTTTTATCTCCAGAAAGGGTCTTTCATTTTTGT
ATCTACTTAAGAAAACCACGGTTAAGACACGCTAATTTGATACTCATTGA
ATTACTAAAGTCCTAAAGTGAAATTAGTCTATGGTATTGTACCGAATTCT
TTTGGACCCAGACCTTTTTTCCATGAGATTAAGGTTGACAAGACTAGGGT
GTGTAAATTAACTTTTTTACATTTACAACATAACAAACACATACCTTTTA
CTCATAACATAACATAACATCACTTGACAATATCTTTACACATCTACCAT
CACATTACATTCACTGACCACCATTGAGATTTGACCATGACACCAACATT
GAGGTATTTACAAAACAGCACCTGAAAAATAAGATACACAGATCTGTAAA
TTCTCTTTGTGGCTTTTCTTTTTTGTTTTTAACGGCTTTAGACACTTATA
AAACAAGATACTCTATATGTATATAGATTTTATTGGGGAAATTTGGCAGA
TTGCGTATTTGCGACCTTTGGTTTATAAACTCCAGTGAACCGAAACTTAA
TTAGTCGTTAAGATAGCAAGGGTTAAAAAACACGGAACATAGAATTTACA
TAGAACAGACAGAGAGACAGAATAACAGTATTTAAACAAGATAACAGTAT
TTGAACATAACAAAAAAAAACAGACCAGACCAGACCAGACGATATACGAC
CGTTCTCCGAAAATGGAGAAACTAAATCACAAACGAGAAGACAAGACAAG
GAACTGGAACAAACCTACGTACAAGAAAAGAAAAACTTTACTCAACAAAG
ACATCGACAACCAAAATGATATCTGATTATCGATAAACAATGCCAAAATC
TTATCCATTATAGCAAGAACAACAAGCCAGAATGTTACCAGATTGGCCAA
AGATTGGTGACAGAATCACGCAGCCTTTTCTTGATCAACTGATGGTCAGT
CAACTGTTGGAACAGAATCTGACACTCGGATTCTTCTTGAAAGGGCTAAA
TGGACCACCAGGTCCTCCTGGTCCACCTGGTTCCCCTGGAGAACCTGGTC
CTCCAGGTTTACCCGGTGCACCAGGAGCCCCTGGACACGTTGGTGAAGAT
GGTGCTCCTGGTCCAATGGGTCCTCCTGGACCATTGGGTTCTGCTGGTGT
CCCCGGTTTCCCTGGAGAGAAAGGAGATCCAGGTGCAACTGGTTTGCCTG
GATCTGCAGGTCTTCCGGGTGCTCCTGGTTTACCTGGTCCTGAAGGATTG
GTTGCAGAAACCCGTGATAATGTTGCAGTACAACTGAAACCAGAGGTGAA
TACTTTGTAGATTCTTACCCTAATTTAAAAGAATTTCATTTTGAAGTCAT
TAATCAGATTTATCTTGCATTTTTATCTGGCATCTTTTAGATTTTGATTT
CATACAATTATTTTGATAAACTTATACGCCAAAGTTCTAGTTTTGACTTG
ATTGAGGGCAAAATTGATGATAACTCTTGGATTCATTATACATGAAGAAT
GATGGAAGTATATTTTGATGTATCTTTTTCTTTTCCAGAACTTCACAGAG
AAATGCGAAGGTGAACGCTTGCTTATTGATTGCAAAACATATAACCATAT
CCAAGTCAAAGATGTATACTGGGGTCGAGATGATACTTCCACCTGTCAAA
ATGCACCAAACGGTTTAGTAGCTGATAAATTTTGTGATGGAAATCGTGAA
AATGCCAAACAAAAAGTTGCGGGACAATGTAAAGGCGAACAGGCTTGTGA
AGTTGTCGCCTCCAATATTTTCTTTGATGATAACAGTTGTGGAAATATAT
TCAAAGTGTTGAAAATTTGGTATGAATGTGTACCCGACTCCAGTCCGGGC
ACGGAAGATACGTACGGATCACGGCGTAAACGGAAGCGTGCAACCAAGGA
TAAAAGATCTTTTCGAGATAGTTAGATTAAAATCAATGACCCAGAAATTC
TAATACAAAAAAACCATCTAGTCAGTAAAATGAAAAAGTTTCATGTGCAG
AGAATGTATTATAGACAATTAACTAAATAATCTGCGGATGAGATTTTGAT
CAAATTATTGACTTGCTGACAACGTTGGTGTTTCTCAGTTATTGCCAGAG
AAGAGCAGAAAGGTGACGACATTGCTGAGAGAGTAAGACAAGAAAGAAAG
ACGAGCTCCCACGAATTTTTTATAACAATAAAGCTTTTTCACATAAGACC
TGTATATATAATATTTTAGTTTAACAATTTATGAAATGATTCCAACCTTA
GGTGTATGGTGTTCTTAACAGATAATTCTAGAGGGCAGAGTGTCTTGTTT
TATAAGGTCAACTTCCTAAATGCAAAGTTGATTGAAACCAATTTTTGTAA
TATCAAATTAACAGTTAAGCCATAAACATCTTCTTTATTTTCAAGAATTT
TAGAGTTTTTTAAGGTCATGGTAGAATGTCAAGACCACCATCGATCGCAT
CAAATAAAAGGGCGTAACCACCCTCCACCCTCCTCTCAATCATCAACACT
CAATCACATCCACCATTCATACACCACAATCATTTATTCACTCAAAATCA
TAAGTCTTTTAGATAATCCACTCACACATTAAATCATAGTCATTTTATCT
AGTTGTTAGAGAATTTTAGACCATTATATTTTTTTGTGTTCCTATTTTTT
TTTGTTTTCAAGACCTCATATATTTGTAATTTCAAATTTGACATAAAACT
AAATTATCAATGACAAACAATGAAAATATCTTTCCAACTAATTTATTTTT
GAGGAATTAACAACTTTAACAAGGACTTAGAATGCTTCTCCTGTATTATT
TCTAACTATATTTCTATTGTAGTAGTGGATAAATAAATGTATAAACTGAA
TTCAATCAAGAATCGAACGAAATTAATTATTTTCTCCTTTTCTTTACTTT
TCAAAAACAACAGTCAACACAGATGCAAATGGGAGGAGATATGAATAGAA
TACTTCCAGATTGGCCAAAGATTGGTGACAGAATCACACAACCCTTTCTC
GATCAATTGATGGTCAGTCAACTGTTGGAACAGAATCTGACTCTCGGATT
CTTCTTAAAAGGACTTAACGGACCACCAGGTCCTCCAGGACCACCAGGAC
CATCTGGAGAACCAGGAGCCCCAGGTTTACCCGGTGCACCAGGAGCCCCT
GGACACGTTGGTGAAGATGGTGCCCCTGGTCCAATGGGACCACCAGGCTT
ATCTGGAGGCCCTGGTATGCCCGGATACCCAGGAGAGAAAGGAGATCCAG
GACCATCAGGTTTACCTGGATCCGCCGGTCTGCCTGGTGCCCCTGGTCTA
CCTGGACCACAGGGATCAGCTGGAGATTCAGGACCTGAACCAATCAAACC
GGTGAGTAAGAAAAAAACGTTCTTTGTCAACATTCTTCGATGAAAACTTT
TACCGCCTTTAAACAGGATGTCGACCAGGATTGTATTTTGGCTATGGAGA
TATTAGATTTAAGGTTAAAACNACCTGAACCAATCAAACCGGTGAGTAAG
AAAAAAACGTTCTTTGTCAACATTCTTCGATGAAAACTTTTACCGCCTTT
AAACAGGATGTCGACCAGGATTGTATTTTGGCTATGGAGATTTTACAATC
TTGCACTAATCGATCTAGCATTTCAGACATTTCGTTTTCTATTTTTAACT
AAAGAAACAATTAGACATACTGTAACCAAAATTCTAGCATTTTCTTTTCA
AACAACTTTTCAGGAGTTCACTGTTGCATGCGAAGGACAAAAACTTTGGA
TTCAGTGTCAACAATACGAATTGATCAAGATCAAAGAAGCATACTGGGGT
CGTGAGGACCACGTTACCTGTTCTGATACACCGGCCGGTCTGAGCCGTGA
AGTCTGTGACGCCAACAGTGATAATGCCTTCACAAAGGTAGATGCACAAT
GCAAAGGTCAACAAAATTGTGAAGTTGTCGCCTCCAATATTTTCTTTGAC
GATAACAGTTGTGGAAACGTTTATAAATATTTGAAAGTGAAATACGAATG
CGAGGCTGACCAGCAGAACAGCATGGACGTCTTGAAAGAAGGCGGTCGCC
GACGACGAAAGAAGAAGCGTGACACCAAAGAGAAGCGATCCTTCAGGGAT
TCATAAATAGAACTCTCTCACTTTCTCCTACAAAATGTCCATGCGCGCAA
AACTTTCTATTTTTTTGACGAAAACAAAACTTCTGAAGACTTTTTTTACA
GGACTTAATAGAACCAACTTTATGGTGTATCATCGAAACCATGGATCAGC
AAAATTTATTTTTTGCTCAAAGCAGTATAAATATTATCGACGGTAGAGAA
GTGTGGTGTAATATTTAGATTAGGCCATATTACTTGCTATGTCTCCAAGT
TATAGAGTTTAAAAACTAAACAATATATTTTTCTATGAATTTTATATTCT
ATTTTGTTATGAAAATACTGGGAACTATTCTATATGCATAAGCAAACGTT
GCAATTCTTTATCATCTTCCTCGGCCAAAATTTACAGTAAATCAAGCATC
TTCCTATTTGCGGGAGAAAGCAATAAATACTAGTACAGTAGCTTAAAGGA
TACTGTAGATTGTCCTACATCTTAGTTATACCCTTCTTGTTTGGCTAAAG
TCGCAAAATTTCATCAACAAAAACAGAAATCGGAATTTCAGGATTTCATA
GTCGCTGTTTATTGCGATGAGATGGTGGTCAGAGGATAAGGAAATTTTAG
ACTGGGCAATTTAAAGTATCGTTTTTCAATTGTACATATCTTCAAAACTG
AAACCCAAAACAATAAATTTGACAAACACAAGTTTCTTTACAGATATGAT
AGTTTACAAATTTTTATAGCAAAATTTGATATAATATTTTTTTACATATT
TTTTTGAAAAATGTGACTTTGAGTGCCCTCGTTATCCCTTATGAGTTCAG
AATGGACGGACTAAAAACCATACGGGGTACACACCCAAAGAATATGCATT
TATAAAGTAAAAATTTGATATTTTTATAACTGATAAATTATTATTCCATA
TTTACAAAAAAAATATACTCTTGTATTTTATGAAGTTATATTTTTTTAAA
TTTTTTTGGAATTTTGTGTTTTTGTTGTAAAATTTTGTGCAGTGACATCC
CTTACTATATAGATTTATATAAAAAAGAGTGTAGAAATTAATTTGGTAAA
ATTTGAAATTAATCCCGTCTACTCCTTTTGGAATTGACAAAAAATCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062232-exon-scaffold_362-1575043694:235001..235132 | TCONS_00062232-exon-scaffold_362-1575043694:235001..235132 | Clytia hemisphaerica | exon |
| TCONS_00062232-exon-scaffold_362-1575043694:233768..233834 | TCONS_00062232-exon-scaffold_362-1575043694:233768..233834 | Clytia hemisphaerica | exon |
| TCONS_00062232-exon-scaffold_362-1575043694:230282..230719 | TCONS_00062232-exon-scaffold_362-1575043694:230282..230719 | Clytia hemisphaerica | exon |
| TCONS_00062232-exon-scaffold_362-1575043694:228433..229919 | TCONS_00062232-exon-scaffold_362-1575043694:228433..229919 | Clytia hemisphaerica | exon |
| TCONS_00062232-exon-scaffold_362-1510915933:235001..235132 | TCONS_00062232-exon-scaffold_362-1510915933:235001..235132 | Clytia hemisphaerica | exon |
| TCONS_00062232-exon-scaffold_362-1510915933:233768..233834 | TCONS_00062232-exon-scaffold_362-1510915933:233768..233834 | Clytia hemisphaerica | exon |
| TCONS_00062232-exon-scaffold_362-1510915933:230282..230719 | TCONS_00062232-exon-scaffold_362-1510915933:230282..230719 | Clytia hemisphaerica | exon |
| TCONS_00062232-exon-scaffold_362-1510915933:228433..229919 | TCONS_00062232-exon-scaffold_362-1510915933:228433..229919 | Clytia hemisphaerica | exon |
| TCONS_00062232-exon-scaffold_362-1491911889:235001..235132 | TCONS_00062232-exon-scaffold_362-1491911889:235001..235132 | Clytia hemisphaerica | exon |
| TCONS_00062232-exon-scaffold_362-1491911889:233768..233834 | TCONS_00062232-exon-scaffold_362-1491911889:233768..233834 | Clytia hemisphaerica | exon |
| TCONS_00062232-exon-scaffold_362-1491911889:230282..230719 | TCONS_00062232-exon-scaffold_362-1491911889:230282..230719 | Clytia hemisphaerica | exon |
| TCONS_00062232-exon-scaffold_362-1491911889:228433..229919 | TCONS_00062232-exon-scaffold_362-1491911889:228433..229919 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:228433..235132 - |
Blast
The following BLAST results are available for this feature:
|
