TCONS_00062225 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062225
Unique NameTCONS_00062225
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062225 ID=TCONS_00062225|Name=TCONS_00062225|organism=Clytia hemisphaerica|type=transcript|length=2547bp
AAAATGGACTTATATAATTAATTGAATTCTGACAGAAAGGTGATTGGTTA
TAAACCgtttatgaaaatgaaaatataaaatgaaaatatataaaaaaaaa
aaatctctacaTAAAATCTGTGTTAAATAGATATAAATCTGTTAAAAATT
ATTTACGTAAAAAGCTTCTAATATAAATCTAAGGTACGTCTTAAGCAGTG
CCAATGACTTTAAATGGGCTAGAGAAGAAACTCTTGGATGGCAACGGAGG
CACTTATTCCCCACCGAAAACACAGGAGTATTTTAAACATGCCAGAtgga
aactaaaatctatcgcaaGAATTCAAGAAATGTGCTGAGTGAAAAGAAAG
ACAacactagattcaatctgttATTCAAAGTGCAGCACGAATCTTAAGGC
TTTTTCTAGTTAGCAAGATTCAATTCTAGCCCTCAGAGATTTAAAACTCG
ATGGTCTTGTACATCTACTTTTCCAGACTTCCAGAGAAAAATTATCATAA
ATGTCCCTCAATCAATTAAGTGTAAATGTACATTAAAAGGTTTTACGATA
TCCTAAATCTTAAAGATAAGAGTGGAGGAATACCTGAAAGAGGATCTGAG
AAAGGGATTTTGATGGATGGATGAATTAAGGTAGGTTCTTAAGACAGGGG
AGGGGAGATTAAGTAATTGACTTCAAATCTTAAGTTTTTTACTTGAAACT
TCCTTAATTTCTTTGTCGCGTTCAGACATTGAACGCTTCAGCTCATCTTG
CATAGGAAGATCAGTTGTGTCTTTGTTAGAGtctttttccttcaattttt
tattttcagatttttctttttccaacaAACCATCAATCATTTGAATCAAA
TCATATTTGGTGATTCCTGTTTTCATTCTAAGTATGTCTTTCAAATCTTT
CATTATCAATATTATCCATCCATTATTTATCAAATTGATCAAAATAATGC
CTTGCCACTTCATTTGCTTCCTCCATCTATAGTATGATGTAGTGAATCAA
TTTCCTGAAATCGGCCGCCATTCCAGCACAGTTCAACACTCCATAATCCA
GTTTTCTCACAGGTCATAATTGTTgtcaattttttctgttttctattTTC
TGGATGACATTAAATAGGAATTCAAAGTAGAGAACAAATAATTCAGAGGC
TAGTAATTTATAGGATGGTCTTTAACAGAATTCTTAAATCTTAGAAATTA
CCCAGTTAACCAAAACTTCCTGAGAATCGTTTTCAAAAGGTAAATCTGAA
CTAGTAGAGTCTATACATCTATAATCAAATATTGGGTTAGTCGTAATTTA
AAATTTGTCAGGAATAGCATATGGGTTCAATAAAAGTTCATACAGTaaga
tcaaataaaattttacttaTGGAATAGTTCTACAGACAAAGAACTGTAAA
TCTAGAGTTTATTACAAATTTATTACAAATGAATGGCTACTCCAAGTCCA
GATTTTacatctttaaaaaattttaaaatttacacaATTATCATGCTTTA
TAGTTATGAGTATAACAACAAATCTTTTCAAATCTCTTTTTGCTTGCATC
AGTTGAAATGTCCTTAAAAAGGTCTACTACTTTAAACTCTTCGAAAGAAG
ACTCTTTTGCAATATTAACAAAGTGCATTTATCACCTTCCATTATCGATA
TCTTCCATCAAAAAATCATCTGGTTCTAGCACAGTTGGTTTGACCAAGTG
TGGGAAGTTGAGCTACATTAAGCCCGTTCAATAAAGGATGAGAAGGCAAC
ACATAATACCGTTCATGTATAACATAACCAGAATCAAAGCCATATTTATC
TGCACCTGGTACATTTCTTACGTGTACTACTTCCCTTCTTACACGGATGT
CTGGATCTGGTTTATTATCTTGTTGTTGCAACTGTTGACCTGCTTTTgtt
atttcatttaaaatgaggGGAGCTGCCCCTAGAATACCTCCAAGCTGTTG
TAGCTGTGGATCAATCATAGGTCCTTGGTTTCTCCTGTCATCATTTCGAT
TATAAGGTCCACTTCGTCTATTATTGGGACCACCATCTCTTCTATTATTT
CCGAtatctcttttattgttgttctcCCTGCCACCACCACCAGTTTTCTT
GGCTTTTGACATTTGAACTGATAATGTCTTTCCAAATAATTTTGTCTTAT
CCACACCTTTTATTGCATCTTGACATGCTTGGCTAGTTGGCAAAGTAACA
AAACCATAATTCTGAATAATGTTCACATCGGTAGGGCCCCCTCCATAGGA
TTTAAATAAGTCACGTAAAGTATCTTTTTCCAGGTTATCAGGAAGATTTC
CGATATGTAGTTTATTcatgtttctttattttgttactTTGTTTATCAAC
tgtaaagataagaaaaatgaaaaaaggttaGGTTAGATTTTTTGACTTAT
ACTCACGGAaataattaaaatgaaaaaaaactattgACAATTGGAAATAG
TTGGAGACAGTTCAGAATTGTTAGAAAAAATACAAGGTGATTCTGGGCCT
GAAATAACAATTCTTGGTTTATTGGTAAGAGAGATGATGATGTTTCT
Run BLAST on NCBI

transcript from alignment at scaffold_362:186911..189526-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062225 ID=TCONS_00062225|Name=TCONS_00062225|organism=Clytia hemisphaerica|type=transcript|length=2616bp|location=Sequence derived from alignment at scaffold_362:186911..189526- (Clytia hemisphaerica)
AAAATGGACTTATATAATTAATTGAATTCTGACAGAAAGGTGATTGGTTA TAAACCGTTTATGAAAATGAAAATATAAAATGAAAATATATAAAAAAAAA AAATCTCTACATAAAATCTGTGTTAAATAGATATAAATCTGTTAAAAATT ATTTACGTAAAAAGCTTCTAATATAAATCTAAGGTACGTCTTAAGCAGTG CCAATGACTTTAAATGGGCTAGAGAAGAAACTCTTGGATGGCAACGGAGG CACTTATTCCCCACCGAAAACACAGGAGTATTTTAAACATGCCAGATGGA AACTAAAATCTATCGCAAGAATTCAAGAAATGTGCTGAGTGAAAAGAAAG ACAACACTAGATTCAATCTGTTATTCAAAGTGCAGCACGAATCTTAAGGC TTTTTCTAGTTAGCAAGATTCAATTCTAGCCCTCAGAGATTTAAAACTCG ATGGTCTTGTACATCTACTTTTCCAGACTTCCAGAGAAAAATTATCATAA ATGTCCCTCAATCAATTAAGTGTAAATGTACATTAAAAGGTTTTACGATA TCCTAAATCTTAAAGATAAGAGTGGAGGAATACCTGAAAGAGGATCTGAG AAAGGGATTTTGATGGATGGATGAATTAAGGTAGGTTCTTAAGACAGGGG AGGGGAGATTAAGTAATTGACTTCAAATCTTAAGTTTTTTACTTGAAACT TCCTTAATTTCTTTGTCGCGTTCAGACATTGAACGCTTCAGCTCATCTTG CATAGGAAGATCAGTTGTGTCTTTGTTAGAGTCTTTTTCCTTCAATTTTT TATTTTCAGATTTTTCTTTTTCCAACAAACCATCAATCATTTGAATCAAA TCATATTTGGTGATTCCTGTTTTCATTCTAAGTATGTCTTTCAAATCTTT CATTATCAATATTATCCATCCATTATTTATCAAATTGATCAAAATAATGC CTTGCCACTTCATTTGCTTCCTCCATCTATAGTATGATGTAGTGAATCAA TTTCCTGAAATCGGCCGCCATTCCAGCACAGTTCAACACTCCATAATCCA GTTTTCTCACAGGTCATAATTGTTGTCAATTTTTTCTGTTTTCTATTTTC TGGATGACATTAAATAGGAATTCAAAGTAGAGAACAAATAATTCAGAGGC TAGTAATTTATAGGATGGTCTTTAACAGAATTCTTAAATCTTAGAAATTA CCCAGTTAACCAAAACTTCCTGAGAATCGTTTTCAAAAGGTAAATCTGAA CTAGTAGAGTCTATACATCTATAATCAAATATTGGGTTAGTCGTAATTTA AAATTTGTCAGGAATAGCATATGGGTTCAATAAAAGTTCATACAGTAAGA TCAAATAAAATTTTACTTATGGAATAGTTCTACAGACAAAGAACTGTAAA TCTAGAGTTTATTACAAATTTATTACAAATGAATGGCTACTCCAAGTCCA GATTTTACATCTTTAAAAAATTTTAAAATTTACACAATTATCATGCTTTA TAGTTATGAGTATAACAACAAATCTTTTCAAATCTCTTTTTGCTTGCATC AGTTGAAATGTCCTTAAAAAGGTCTACTACTTTAAACTCTTCGAAAGAAG ACTCTTTTGCAATATTAACAAAGTGCATTTATCACCTTCCATTATCGATA TCTTCCATCAAAAAATCATCTGGTTCTAGCACAGTTGGTTTGACCAAGTG TGGGAAGTTGAGCTACATTAAGTCCGTTCAATAAAGGATGAGAAGGCAAC ACATAATACCGTTCATGTATAACATAACCAGNTACATTAAGCCCGTTCAA TAAAGGATGAGAAGGCAACACATAATACCGTTCATGTATAACATAACCAG AATCAAAGCCATATTTATCTGCACCTGGTACATTTCTTACGTGTACTACT TCCCTTCTTACACGGATGTCTGGATCTGGTTTATTATCTTGTTGTTGCAA CTGTTGACCTGCTTTTGTTATTTCATTTAAAATGAGGGGAGCTGCCCCTA GAATACCTCCAAGCTGTTGTAGCTGTGGATCAATCATAGGTCCTTGGTTT CTCCTGTCATCATTTCGATTATAAGGTCCACTTCGTCTATTATTGGGACC ACCATCTCTTCTATTATTTCCGATATCTCTTTTATTGTTGTTCTCCCTGC CACCACCACCAGTTTTCTTGGCTTTTGACATTTGAACTGATAATGTCTTT CCAAATAATTTTGTCTTATCCACACCTTTTATTGCATCTTGACATGCTTG GCTAGTTGGCAAAGTAACAAAACCATAATTCTGAATAATGTTCACATCGG TAGGGCCCCCTCCATAGGATTTAAATAAGTCACGTAAAGTATCTTTTTCC AGGTTATCAGGAAGATTTCCGATATGTAGTTTATTCATGTTTCTTTATTT TGTTACTTTGTTTATCAACTGTAAAGATAAGAAAAATGAAAAAAGGTTAG GTTAGATTTTTTGACTTATACTCACGGAAATAATTAAAATGAAAAAAAAC TATTGACAATTGGAAATAGTTGGAGACAGTTCAGAATTGTTAGAAAAAAT ACAAGGTGATTCTGGGCCTGAAATAACAATTCTTGGTTTATTGGTAAGAG AGATGATGATGTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039008XLOC_039008Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062225-exon-scaffold_362-1575043694:187811..189526TCONS_00062225-exon-scaffold_362-1575043694:187811..189526Clytia hemisphaericaexon
TCONS_00062225-exon-scaffold_362-1575043694:186911..187741TCONS_00062225-exon-scaffold_362-1575043694:186911..187741Clytia hemisphaericaexon
TCONS_00062225-exon-scaffold_362-1510915933:187811..189526TCONS_00062225-exon-scaffold_362-1510915933:187811..189526Clytia hemisphaericaexon
TCONS_00062225-exon-scaffold_362-1510915933:186911..187741TCONS_00062225-exon-scaffold_362-1510915933:186911..187741Clytia hemisphaericaexon
TCONS_00062225-exon-scaffold_362-1491911889:187811..189526TCONS_00062225-exon-scaffold_362-1491911889:187811..189526Clytia hemisphaericaexon
TCONS_00062225-exon-scaffold_362-1491911889:186911..187741TCONS_00062225-exon-scaffold_362-1491911889:186911..187741Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:186911..189526 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.46592 0.629023 1.56992 2.12501 0.185957 0.149764 0 0 0.257979 0 0 0 0.241451 0 0 0.23225 0 0.147787 0 0 0.215356 0.368622 1.06112 0.992057 0 0 0 0 0.764915 0.325125
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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