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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062225 ID=TCONS_00062225|Name=TCONS_00062225|organism=Clytia hemisphaerica|type=transcript|length=2547bp
AAAATGGACTTATATAATTAATTGAATTCTGACAGAAAGGTGATTGGTTA
TAAACCgtttatgaaaatgaaaatataaaatgaaaatatataaaaaaaaa
aaatctctacaTAAAATCTGTGTTAAATAGATATAAATCTGTTAAAAATT
ATTTACGTAAAAAGCTTCTAATATAAATCTAAGGTACGTCTTAAGCAGTG
CCAATGACTTTAAATGGGCTAGAGAAGAAACTCTTGGATGGCAACGGAGG
CACTTATTCCCCACCGAAAACACAGGAGTATTTTAAACATGCCAGAtgga
aactaaaatctatcgcaaGAATTCAAGAAATGTGCTGAGTGAAAAGAAAG
ACAacactagattcaatctgttATTCAAAGTGCAGCACGAATCTTAAGGC
TTTTTCTAGTTAGCAAGATTCAATTCTAGCCCTCAGAGATTTAAAACTCG
ATGGTCTTGTACATCTACTTTTCCAGACTTCCAGAGAAAAATTATCATAA
ATGTCCCTCAATCAATTAAGTGTAAATGTACATTAAAAGGTTTTACGATA
TCCTAAATCTTAAAGATAAGAGTGGAGGAATACCTGAAAGAGGATCTGAG
AAAGGGATTTTGATGGATGGATGAATTAAGGTAGGTTCTTAAGACAGGGG
AGGGGAGATTAAGTAATTGACTTCAAATCTTAAGTTTTTTACTTGAAACT
TCCTTAATTTCTTTGTCGCGTTCAGACATTGAACGCTTCAGCTCATCTTG
CATAGGAAGATCAGTTGTGTCTTTGTTAGAGtctttttccttcaattttt
tattttcagatttttctttttccaacaAACCATCAATCATTTGAATCAAA
TCATATTTGGTGATTCCTGTTTTCATTCTAAGTATGTCTTTCAAATCTTT
CATTATCAATATTATCCATCCATTATTTATCAAATTGATCAAAATAATGC
CTTGCCACTTCATTTGCTTCCTCCATCTATAGTATGATGTAGTGAATCAA
TTTCCTGAAATCGGCCGCCATTCCAGCACAGTTCAACACTCCATAATCCA
GTTTTCTCACAGGTCATAATTGTTgtcaattttttctgttttctattTTC
TGGATGACATTAAATAGGAATTCAAAGTAGAGAACAAATAATTCAGAGGC
TAGTAATTTATAGGATGGTCTTTAACAGAATTCTTAAATCTTAGAAATTA
CCCAGTTAACCAAAACTTCCTGAGAATCGTTTTCAAAAGGTAAATCTGAA
CTAGTAGAGTCTATACATCTATAATCAAATATTGGGTTAGTCGTAATTTA
AAATTTGTCAGGAATAGCATATGGGTTCAATAAAAGTTCATACAGTaaga
tcaaataaaattttacttaTGGAATAGTTCTACAGACAAAGAACTGTAAA
TCTAGAGTTTATTACAAATTTATTACAAATGAATGGCTACTCCAAGTCCA
GATTTTacatctttaaaaaattttaaaatttacacaATTATCATGCTTTA
TAGTTATGAGTATAACAACAAATCTTTTCAAATCTCTTTTTGCTTGCATC
AGTTGAAATGTCCTTAAAAAGGTCTACTACTTTAAACTCTTCGAAAGAAG
ACTCTTTTGCAATATTAACAAAGTGCATTTATCACCTTCCATTATCGATA
TCTTCCATCAAAAAATCATCTGGTTCTAGCACAGTTGGTTTGACCAAGTG
TGGGAAGTTGAGCTACATTAAGCCCGTTCAATAAAGGATGAGAAGGCAAC
ACATAATACCGTTCATGTATAACATAACCAGAATCAAAGCCATATTTATC
TGCACCTGGTACATTTCTTACGTGTACTACTTCCCTTCTTACACGGATGT
CTGGATCTGGTTTATTATCTTGTTGTTGCAACTGTTGACCTGCTTTTgtt
atttcatttaaaatgaggGGAGCTGCCCCTAGAATACCTCCAAGCTGTTG
TAGCTGTGGATCAATCATAGGTCCTTGGTTTCTCCTGTCATCATTTCGAT
TATAAGGTCCACTTCGTCTATTATTGGGACCACCATCTCTTCTATTATTT
CCGAtatctcttttattgttgttctcCCTGCCACCACCACCAGTTTTCTT
GGCTTTTGACATTTGAACTGATAATGTCTTTCCAAATAATTTTGTCTTAT
CCACACCTTTTATTGCATCTTGACATGCTTGGCTAGTTGGCAAAGTAACA
AAACCATAATTCTGAATAATGTTCACATCGGTAGGGCCCCCTCCATAGGA
TTTAAATAAGTCACGTAAAGTATCTTTTTCCAGGTTATCAGGAAGATTTC
CGATATGTAGTTTATTcatgtttctttattttgttactTTGTTTATCAAC
tgtaaagataagaaaaatgaaaaaaggttaGGTTAGATTTTTTGACTTAT
ACTCACGGAaataattaaaatgaaaaaaaactattgACAATTGGAAATAG
TTGGAGACAGTTCAGAATTGTTAGAAAAAATACAAGGTGATTCTGGGCCT
GAAATAACAATTCTTGGTTTATTGGTAAGAGAGATGATGATGTTTCT Run BLAST on NCBI transcript from alignment at scaffold_362:186911..189526- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062225 ID=TCONS_00062225|Name=TCONS_00062225|organism=Clytia hemisphaerica|type=transcript|length=2616bp|location=Sequence derived from alignment at scaffold_362:186911..189526- (Clytia hemisphaerica)
AAAATGGACTTATATAATTAATTGAATTCTGACAGAAAGGTGATTGGTTA
TAAACCGTTTATGAAAATGAAAATATAAAATGAAAATATATAAAAAAAAA
AAATCTCTACATAAAATCTGTGTTAAATAGATATAAATCTGTTAAAAATT
ATTTACGTAAAAAGCTTCTAATATAAATCTAAGGTACGTCTTAAGCAGTG
CCAATGACTTTAAATGGGCTAGAGAAGAAACTCTTGGATGGCAACGGAGG
CACTTATTCCCCACCGAAAACACAGGAGTATTTTAAACATGCCAGATGGA
AACTAAAATCTATCGCAAGAATTCAAGAAATGTGCTGAGTGAAAAGAAAG
ACAACACTAGATTCAATCTGTTATTCAAAGTGCAGCACGAATCTTAAGGC
TTTTTCTAGTTAGCAAGATTCAATTCTAGCCCTCAGAGATTTAAAACTCG
ATGGTCTTGTACATCTACTTTTCCAGACTTCCAGAGAAAAATTATCATAA
ATGTCCCTCAATCAATTAAGTGTAAATGTACATTAAAAGGTTTTACGATA
TCCTAAATCTTAAAGATAAGAGTGGAGGAATACCTGAAAGAGGATCTGAG
AAAGGGATTTTGATGGATGGATGAATTAAGGTAGGTTCTTAAGACAGGGG
AGGGGAGATTAAGTAATTGACTTCAAATCTTAAGTTTTTTACTTGAAACT
TCCTTAATTTCTTTGTCGCGTTCAGACATTGAACGCTTCAGCTCATCTTG
CATAGGAAGATCAGTTGTGTCTTTGTTAGAGTCTTTTTCCTTCAATTTTT
TATTTTCAGATTTTTCTTTTTCCAACAAACCATCAATCATTTGAATCAAA
TCATATTTGGTGATTCCTGTTTTCATTCTAAGTATGTCTTTCAAATCTTT
CATTATCAATATTATCCATCCATTATTTATCAAATTGATCAAAATAATGC
CTTGCCACTTCATTTGCTTCCTCCATCTATAGTATGATGTAGTGAATCAA
TTTCCTGAAATCGGCCGCCATTCCAGCACAGTTCAACACTCCATAATCCA
GTTTTCTCACAGGTCATAATTGTTGTCAATTTTTTCTGTTTTCTATTTTC
TGGATGACATTAAATAGGAATTCAAAGTAGAGAACAAATAATTCAGAGGC
TAGTAATTTATAGGATGGTCTTTAACAGAATTCTTAAATCTTAGAAATTA
CCCAGTTAACCAAAACTTCCTGAGAATCGTTTTCAAAAGGTAAATCTGAA
CTAGTAGAGTCTATACATCTATAATCAAATATTGGGTTAGTCGTAATTTA
AAATTTGTCAGGAATAGCATATGGGTTCAATAAAAGTTCATACAGTAAGA
TCAAATAAAATTTTACTTATGGAATAGTTCTACAGACAAAGAACTGTAAA
TCTAGAGTTTATTACAAATTTATTACAAATGAATGGCTACTCCAAGTCCA
GATTTTACATCTTTAAAAAATTTTAAAATTTACACAATTATCATGCTTTA
TAGTTATGAGTATAACAACAAATCTTTTCAAATCTCTTTTTGCTTGCATC
AGTTGAAATGTCCTTAAAAAGGTCTACTACTTTAAACTCTTCGAAAGAAG
ACTCTTTTGCAATATTAACAAAGTGCATTTATCACCTTCCATTATCGATA
TCTTCCATCAAAAAATCATCTGGTTCTAGCACAGTTGGTTTGACCAAGTG
TGGGAAGTTGAGCTACATTAAGTCCGTTCAATAAAGGATGAGAAGGCAAC
ACATAATACCGTTCATGTATAACATAACCAGNTACATTAAGCCCGTTCAA
TAAAGGATGAGAAGGCAACACATAATACCGTTCATGTATAACATAACCAG
AATCAAAGCCATATTTATCTGCACCTGGTACATTTCTTACGTGTACTACT
TCCCTTCTTACACGGATGTCTGGATCTGGTTTATTATCTTGTTGTTGCAA
CTGTTGACCTGCTTTTGTTATTTCATTTAAAATGAGGGGAGCTGCCCCTA
GAATACCTCCAAGCTGTTGTAGCTGTGGATCAATCATAGGTCCTTGGTTT
CTCCTGTCATCATTTCGATTATAAGGTCCACTTCGTCTATTATTGGGACC
ACCATCTCTTCTATTATTTCCGATATCTCTTTTATTGTTGTTCTCCCTGC
CACCACCACCAGTTTTCTTGGCTTTTGACATTTGAACTGATAATGTCTTT
CCAAATAATTTTGTCTTATCCACACCTTTTATTGCATCTTGACATGCTTG
GCTAGTTGGCAAAGTAACAAAACCATAATTCTGAATAATGTTCACATCGG
TAGGGCCCCCTCCATAGGATTTAAATAAGTCACGTAAAGTATCTTTTTCC
AGGTTATCAGGAAGATTTCCGATATGTAGTTTATTCATGTTTCTTTATTT
TGTTACTTTGTTTATCAACTGTAAAGATAAGAAAAATGAAAAAAGGTTAG
GTTAGATTTTTTGACTTATACTCACGGAAATAATTAAAATGAAAAAAAAC
TATTGACAATTGGAAATAGTTGGAGACAGTTCAGAATTGTTAGAAAAAAT
ACAAGGTGATTCTGGGCCTGAAATAACAATTCTTGGTTTATTGGTAAGAG
AGATGATGATGTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062225-exon-scaffold_362-1575043694:187811..189526 | TCONS_00062225-exon-scaffold_362-1575043694:187811..189526 | Clytia hemisphaerica | exon |
| TCONS_00062225-exon-scaffold_362-1575043694:186911..187741 | TCONS_00062225-exon-scaffold_362-1575043694:186911..187741 | Clytia hemisphaerica | exon |
| TCONS_00062225-exon-scaffold_362-1510915933:187811..189526 | TCONS_00062225-exon-scaffold_362-1510915933:187811..189526 | Clytia hemisphaerica | exon |
| TCONS_00062225-exon-scaffold_362-1510915933:186911..187741 | TCONS_00062225-exon-scaffold_362-1510915933:186911..187741 | Clytia hemisphaerica | exon |
| TCONS_00062225-exon-scaffold_362-1491911889:187811..189526 | TCONS_00062225-exon-scaffold_362-1491911889:187811..189526 | Clytia hemisphaerica | exon |
| TCONS_00062225-exon-scaffold_362-1491911889:186911..187741 | TCONS_00062225-exon-scaffold_362-1491911889:186911..187741 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:186911..189526 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000504 | RRM_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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