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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062222 ID=TCONS_00062222|Name=TCONS_00062222|organism=Clytia hemisphaerica|type=transcript|length=2115bp ttttagttttaggtAATGGAAAGaaactataaaaataatttttttttcag atgcatttttataaaaaatggtaAGATCAATATCTGATTTAGTTACAGAA ATTCAATGGTGGCTCCGTTTGGCAGCATTCCTTCATGGTCCATTAAAGTC GTTTTTACTTCACGTTTTGCATAATCTTGCCAACGACCCATCGTATACTG GACTTCCTCAAGACCCTCAAAATCTATATATCAAAAGCTTTCAACCCGTT caagtcaaaacaaaatcaatagATTGAGAAGTAGGCACATTTTGAGTCCA gaccaaataagaaaattacTTCCACCGAATAACAATGCAACAGACTCGTC CGATTTCGATGTCACATTACTATGTTTACTGATTCGTCAATTCACGACAC TCCAAGCCCCTGCTAATAGATGGGATGACAAAAAGCTACCTCTTGTTGAT ATCAGTATTGCAGCATTCGTGATCCGTGCCAGAGAATGGCGAAATTACAT CCACCACACAGAGCCTAACAAAATCACAAAGGTGGACTTCAATCAGAAAT GGGCAGAAGGAGAACTTATAATCAACAATCTAGGGTTCATTTACAACACA ACCCAGCTCAAAACAATGTCTTTGGACATGAAATACGAAAATGTTGTCAA ATCAATGTATCTTTATTTGGAAAGAAAGCAAACAACCCTTTTAAAACAAC AAGCAAATCTCGCTGATCAGATGAATTCTCTTGTTGTCTTGCAAACTACT ATGGGAAATCAACAGACAATTCTAAACAATAAACACAAAGTCTTGGCTGA AAAACAAGCTTCGACATCCCAAGATTTTGTTAACCTACGAACTTCAAATG CTCAAAAGATTGGAGATCTAACTCAAGAGTTGACCCTTCAAAGGGAACAA CAAGATCTAAATTCAGAAGAAatcaattctttaaaaaaaagattggagGA AATTAACACCGCACGACAATCTTTAAAAGAGCGCTTTTCCAGTCCTAGGA AAAAACGGGTTGATTCAGGGTCCTGCTGTTTGAAGAAAGTTCTTGATCAC ATTTCCAAAGAGTTGGGGATTGAAGAAAGGAAGACACTTCTCAAAAAACT TGGTATCGAAGCTGATAATCCACGAAAAGAATTTTCGGAGCAATTGGAGG ATATCACATGGTCGGAGATCAAGAAAGAACTTGAGGTACTAGAAAGAAAC GACATTGTCAAGTATATTAAGAAGAATACTTTACTCACAAAAGATCTCCA GAGAGCAGCATCTCATTTAAAAGAACACTATCTAAACGAACTGATCCGGT GTCTCGTCGAACAACCGTTATCTCAAACGGATAGCGATATTGATTACGTC ATGCGAGAGGATGTTTATATCGATCTCGTTGTGTTGCCATCCTCAACCGT TGACAAGGAATGGTCAAACTCTGATCGTGATGCTTTGGTTGAACAGCAAA AGCTTGTAAAATCAACTGTTGAAAAAGATATCAAAACTATTTTATTACCT AGCGATGAAGTCGTTTTTATCCGTGGTGTTGCAGGAATTGGAAAATCAAC GCTTCTTGACATGTTTACACTAAAATGGGCCAAAAATGAAATATCTAATG gaattgactttgttttcaaattcaCTTGTAGAGAATTGAATAATGTTTCG ACCAATTTCAACAATCTAGAGCAGCtcttcaaattgaaatttccaGACGT GATGCAAGTCATCACATTTAAAAATCTGATGGAGATTTCGGAAAGAGTTT TAATTGTTGTAGATGGTATTGACGAGTTAAGAGATTTATATGAGGTTAGA AACGACACAGTATCAAATGGGAACAGGATTAGTAATAAGGTTTTCGAACT ACTTAATCCGAAAACAGGGTGGCTTTTACACCATAAATCAATAGTTTGTG GACGTCCCAGAGCTACTGAATTCATCAAAAAACAACTTCCACCAAGTTCA AAACGGAAGACCGTTGAGGTTTGCGGCTttgatgacaaaaatattgaaaa atatattcaaaacttttttcgtGATAAGAAGGAAAAAGCAGTTTCCGTTC AAACAATAATCGAAAGCTCGTACGATCTGCGTATTATGGCACGTGTACCG GTGTTTTTATACATT Run BLAST on NCBI protein sequence of TCONS_00062222-protein >TCONS_00062222-protein ID=TCONS_00062222-protein|Name=TCONS_00062222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=500bp
MSLDMKYENVVKSMYLYLERKQTTLLKQQANLADQMNSLVVLQTTMGNQQ TILNNKHKVLAEKQASTSQDFVNLRTSNAQKIGDLTQELTLQREQQDLNS EEINSLKKRLEEINTARQSLKERFSSPRKKRVDSGSCCLKKVLDHISKEL GIEERKTLLKKLGIEADNPRKEFSEQLEDITWSEIKKELEVLERNDIVKY IKKNTLLTKDLQRAASHLKEHYLNELIRCLVEQPLSQTDSDIDYVMREDV YIDLVVLPSSTVDKEWSNSDRDALVEQQKLVKSTVEKDIKTILLPSDEVV FIRGVAGIGKSTLLDMFTLKWAKNEISNGIDFVFKFTCRELNNVSTNFNN LEQLFKLKFPDVMQVITFKNLMEISERVLIVVDGIDELRDLYEVRNDTVS NGNRISNKVFELLNPKTGWLLHHKSIVCGRPRATEFIKKQLPPSSKRKTV EVCGFDDKNIEKYIQNFFRDKKEKAVSVQTIIESSYDLRIMARVPVFLYI Run BLAST on NCBI transcript from alignment at scaffold_362:1026599..1029387+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062222 ID=TCONS_00062222|Name=TCONS_00062222|organism=Clytia hemisphaerica|type=transcript|length=2789bp|location=Sequence derived from alignment at scaffold_362:1026599..1029387+ (Clytia hemisphaerica) ttttagttttaggtAATGGAAAGaaactataaaaataatttttttttcag
atgcatttttataaaaaatggtaAGATCAATATCTGATTTAGTTACAGAA
ATTCAATGGTGGCTCCGTTTGGCAGCATTCCTTCATGGTCCATTAAAGTC
GTTTTTACTTCACGTTTTGCATAATCTTGCCAACGACCCATCGTATACTG
GACTTCCTCAAGACCCTCAAAATCTATATATCAAAAGCTTTCAACCCGTT
caagtcaaaacaaaatcaatagATTGAGAAGTAGGCACATTTTGAGTCCA
gaccaaataagaaaattacTTCCACCGAATAACAATGCAACAGACTCGTC
CGATTTCGATGTCACATTACTATGTTTACTGATTCGTCAATTCACGACAC
TCCAAGCCCCTGCTAATAGATGGGATGACAAAAAGCTACCTCTTGTTGAT
ATCAGTATTGCAGCATTCGTGATCCGTGCCAGAGAATGGCGAAATTACAT
CCACCACACAGAGCCTAACAAAATCACAAAGGTGGACTTCAATCAGAAAT
GGGCAGAAGGAGAACTTATAATCAACAATCTAGGGTTCATTTACAACACA
ACCCAGCTCAAAACAATGTCTTTGGACATGAAATACGAAAATGTTGTCAA
ATCAATGTATCTTTATTTGGAAAGAAAGCAAACAACCCTTTTAAAACAAC
AAGCAAATCTCGCTGATCAGATGAATTCTCTTGTTGTCTTGCAAACTACT
ATGGGAAATCAACAGACAATTCTAAACAATAAACACAAAGTCTTGGCTGA
AAAACAAGCTTCGACATCCCAAGATTTTGTTAACCTACGAACTTCAAATG
CTCAAAAGATTGGAGATCTAACTCAAGAGTTGACCCTTCAAAGGGAACAA
CAAGATCTAAATTCAGAAGAAatcaattctttaaaaaaaagattggagGA
AATTAACACCGCACGACAATCTTTAAAAGAGCGCTTTTCCAGTCCTAGGA
AAAAACGGGTTGATTCAGGTAAGgatgattttcaaaatgaagaaaaacaa
atttctcattttttccttttattaAAACAATTACTGTATCTTGGtcagaa
aagaaaattatcaaGTACTTTTTTTTCCGAACAAAAAtgggatacatttc
aacaaggTAAATATAAAATTTAGATTGTTTGTCAGTTTGAACTTAAAGTG
TTCACCTAAAACCTTTAGGGTCCTGCTGTTTGAAGAAAGTTCTTGATCAC
ATTTCCAAAGAGTTGGGGATTGAAGAAAGGAAGACACTTCTCAAAAAACT
TGGTATCGAAGCTGATAATCCACGAAAAGAATTTTCGGAGCAATTGGAGG
ATATCACATGGTCGGAGATCAAGAAAGAACTTGAGGTACTAGAAAGAAAC
GACATTGTCAAGTATATTAAGAAGAATACTTTACTCACAAAAGGTACTTT
ATTTGTTTTAGGCCTATTTTTTGTACTTTATTTTTCCTAATGGGCAGTAG
Tgtggtgggtcgactaaaattcgggcaaactttagaaaatgaaaagtaaa
tatttttaacgCAAGCAAAGTGAGCACAAAGATATTTGGGTATTTTTTCT
CTATTTGGCCGAAAACTGCCATGTCTAAAgtgtaaaagagcaaaggggcg
ccgaaattagtaatTAGAGGCGTCTTTTAGCACTTTTTGTATTTTAGCGC
CCCTTTGAAAAACCTCCGCTGCCCTACCACGCTACTGCTAATGGGTAAAG
AAACCTTGAGGGAAATAGCTCACACAACTAGATCTAAACTGGTTTACTAA
ATTACCAAATAACCCCGAGATTCGCATACCATTCCGAttagagaaaataa
aaattatcaaaatcacCAATATATTGGGATCAACTTTTGTGATCAACTTA
TACAATGAACTTTTTAGATCTCCAGAGAGCAGCATCTCATTTAAAAGAAC
ACTATCTAAACGAACTGATCCGGTGTCTCGTCGAACAACCGTTATCTCAA
ACGGATAGCGATATTGATTACGTCATGCGAGAGGATGTTTATATCGATCT
CGTTGTGTTGCCATCCTCAACCGTTGACAAGGAATGGTCAAACTCTGATC
GTGATGCTTTGGTTGAACAGCAAAAGCTTGTAAAATCAACTGTTGAAAAA
GATATCAAAACTATTTTATTACCTAGCGATGAAGTCGTTTTTATCCGTGG
TGTTGCAGGAATTGGAAAATCAACGCTTCTTGACATGTTTACACTAAAAT
GGGCCAAAAATGAAATATCTAATGgaattgactttgttttcaaattcaCT
TGTAGAGAATTGAATAATGTTTCGACCAATTTCAACAATCTAGAGCAGCt
cttcaaattgaaatttccaGACGTGATGCAAGTCATCACATTTAAAAATC
TGATGGAGATTTCGGAAAGAGTTTTAATTGTTGTAGATGGTATTGACGAG
TTAAGAGATTTATATGAGGTTAGAAACGACACAGTATCAAATGGGAACAG
GATTAGTAATAAGGTTTTCGAACTACTTAATCCGAAAACAGGGTGGCTTT
TACACCATAAATCAATAGTTTGTGGACGTCCCAGAGCTACTGAATTCATC
AAAAAACAACTTCCACCAAGTTCAAAACGGAAGACCGTTGAGGTTTGCGG
CTttgatgacaaaaatattgaaaaatatattcaaaacttttttcgtGATA
AGAAGGAAAAAGCAGTTTCCGTTCAAACAATAATCGAAAGCTCGTACGAT
CTGCGTATTATGGCACGTGTACCGGTGTTTTTATACATT Coding sequence (CDS) from alignment at scaffold_362:1026599..1029387+ >TCONS_00062222 ID=TCONS_00062222|Name=TCONS_00062222|organism=Clytia hemisphaerica|type=CDS|length=4500bp|location=Sequence derived from alignment at scaffold_362:1026599..1029387+ (Clytia hemisphaerica) ATGTCTTTGGACATGAAATACGAAAATGTTGTCAAATCAATGTATCTTTA TTTGGAAAGAAAGCAAACAACCCTTTTAAAACAACAAGCAAATCTCGCTG ATCAGATGAATTCTCTTGTTGTCTTGCAAACTACTATGGGAAATCAACAG ACAATTCTAAACAATAAACACAAAGTCTTGGCTGAAAAACAAGCTTCGAC ATCCCAAGATTTTGTTAACCTACGAACTTCAAATGCTCAAAAGATTGGAG ATCTAACTCAAGAGTTGACCCTTCAAAGGGAACAACAAGATCTAAATTCA GAAGAAatcaattctttaaaaaaaagattggagGAAATTAACACCGCACG ACAATCTTTAAAAGAGCGCTTTTCCAGTCCTAGGAAAAAACGGGTTGATT CAGGGTCCTGCTGTTTGAAGAAAGTTCTTGATCACATTTCCAAAGAGTTG GGGATTGAAGAAAGGAAGACACTTCTCAAAAAACTTGGTATCGAAGCTGA TAATCCACGAAAAGAATTTTCGGAGCAATTGGAGGATATCACATGGTCGG AGATCAAGAAAGAACTTGAGGTACTAGAAAGAAACGACATTGTCAAGTAT ATTAAGAAGAATACTTTACTCACAAAAGATCTCCAGAGAGCAGCATCTCA TTTAAAAGAACACTATCTAAACGAACTGATCCGGTGTCTCGTCGAACAAC CGTTATCTCAAACGGATAGCGATATTGATTACGTCATGCGAGAGGATGTT TATATCGATCTCGTTGTGTTGCCATCCTCAACCGTTGACAAGGAATGGTC AAACTCTGATCGTGATGCTTTGGTTGAACAGCAAAAGCTTGTAAAATCAA CTGTTGAAAAAGATATCAAAACTATTTTATTACCTAGCGATGAAGTCGTT TTTATCCGTGGTGTTGCAGGAATTGGAAAATCAACGCTTCTTGACATGTT TACACTAAAATGGGCCAAAAATGAAATATCTAATGgaattgactttgttt tcaaattcaCTTGTAGAGAATTGAATAATGTTTCGACCAATTTCAACAAT CTAGAGCAGCtcttcaaattgaaatttccaGACGTGATGCAAGTCATCAC ATTTAAAAATCTGATGGAGATTTCGGAAAGAGTTTTAATTGTTGTAGATG GTATTGACGAGTTAAGAGATTTATATGAGGTTAGAAACGACACAGTATCA AATGGGAACAGGATTAGTAATAAGGTTTTCGAACTACTTAATCCGAAAAC AGGGTGGCTTTTACACCATAAATCAATAGTTTGTGGACGTCCCAGAGCTA CTGAATTCATCAAAAAACAACTTCCACCAAGTTCAAAACGGAAGACCGTT GAGGTTTGCGGCTttgatgacaaaaatattgaaaaatatattcaaaactt ttttcgtGATAAGAAGGAAAAAGCAGTTTCCGTTCAAACAATAATCGAAA GCTCGTACGATCTGCGTATTATGGCACGTGTACCGGTGTTTTTATACATT ATGTCTTTGGACATGAAATACGAAAATGTTGTCAAATCAATGTATCTTTA TTTGGAAAGAAAGCAAACAACCCTTTTAAAACAACAAGCAAATCTCGCTG ATCAGATGAATTCTCTTGTTGTCTTGCAAACTACTATGGGAAATCAACAG ACAATTCTAAACAATAAACACAAAGTCTTGGCTGAAAAACAAGCTTCGAC ATCCCAAGATTTTGTTAACCTACGAACTTCAAATGCTCAAAAGATTGGAG ATCTAACTCAAGAGTTGACCCTTCAAAGGGAACAACAAGATCTAAATTCA GAAGAAatcaattctttaaaaaaaagattggagGAAATTAACACCGCACG ACAATCTTTAAAAGAGCGCTTTTCCAGTCCTAGGAAAAAACGGGTTGATT CAGGGTCCTGCTGTTTGAAGAAAGTTCTTGATCACATTTCCAAAGAGTTG GGGATTGAAGAAAGGAAGACACTTCTCAAAAAACTTGGTATCGAAGCTGA TAATCCACGAAAAGAATTTTCGGAGCAATTGGAGGATATCACATGGTCGG AGATCAAGAAAGAACTTGAGGTACTAGAAAGAAACGACATTGTCAAGTAT ATTAAGAAGAATACTTTACTCACAAAAGATCTCCAGAGAGCAGCATCTCA TTTAAAAGAACACTATCTAAACGAACTGATCCGGTGTCTCGTCGAACAAC CGTTATCTCAAACGGATAGCGATATTGATTACGTCATGCGAGAGGATGTT TATATCGATCTCGTTGTGTTGCCATCCTCAACCGTTGACAAGGAATGGTC AAACTCTGATCGTGATGCTTTGGTTGAACAGCAAAAGCTTGTAAAATCAA CTGTTGAAAAAGATATCAAAACTATTTTATTACCTAGCGATGAAGTCGTT TTTATCCGTGGTGTTGCAGGAATTGGAAAATCAACGCTTCTTGACATGTT TACACTAAAATGGGCCAAAAATGAAATATCTAATGgaattgactttgttt tcaaattcaCTTGTAGAGAATTGAATAATGTTTCGACCAATTTCAACAAT CTAGAGCAGCtcttcaaattgaaatttccaGACGTGATGCAAGTCATCAC ATTTAAAAATCTGATGGAGATTTCGGAAAGAGTTTTAATTGTTGTAGATG GTATTGACGAGTTAAGAGATTTATATGAGGTTAGAAACGACACAGTATCA AATGGGAACAGGATTAGTAATAAGGTTTTCGAACTACTTAATCCGAAAAC AGGGTGGCTTTTACACCATAAATCAATAGTTTGTGGACGTCCCAGAGCTA CTGAATTCATCAAAAAACAACTTCCACCAAGTTCAAAACGGAAGACCGTT GAGGTTTGCGGCTttgatgacaaaaatattgaaaaatatattcaaaactt ttttcgtGATAAGAAGGAAAAAGCAGTTTCCGTTCAAACAATAATCGAAA GCTCGTACGATCTGCGTATTATGGCACGTGTACCGGTGTTTTTATACATT ATGTCTTTGGACATGAAATACGAAAATGTTGTCAAATCAATGTATCTTTA TTTGGAAAGAAAGCAAACAACCCTTTTAAAACAACAAGCAAATCTCGCTG ATCAGATGAATTCTCTTGTTGTCTTGCAAACTACTATGGGAAATCAACAG ACAATTCTAAACAATAAACACAAAGTCTTGGCTGAAAAACAAGCTTCGAC ATCCCAAGATTTTGTTAACCTACGAACTTCAAATGCTCAAAAGATTGGAG ATCTAACTCAAGAGTTGACCCTTCAAAGGGAACAACAAGATCTAAATTCA GAAGAAatcaattctttaaaaaaaagattggagGAAATTAACACCGCACG ACAATCTTTAAAAGAGCGCTTTTCCAGTCCTAGGAAAAAACGGGTTGATT CAGGGTCCTGCTGTTTGAAGAAAGTTCTTGATCACATTTCCAAAGAGTTG GGGATTGAAGAAAGGAAGACACTTCTCAAAAAACTTGGTATCGAAGCTGA TAATCCACGAAAAGAATTTTCGGAGCAATTGGAGGATATCACATGGTCGG AGATCAAGAAAGAACTTGAGGTACTAGAAAGAAACGACATTGTCAAGTAT ATTAAGAAGAATACTTTACTCACAAAAGATCTCCAGAGAGCAGCATCTCA TTTAAAAGAACACTATCTAAACGAACTGATCCGGTGTCTCGTCGAACAAC CGTTATCTCAAACGGATAGCGATATTGATTACGTCATGCGAGAGGATGTT TATATCGATCTCGTTGTGTTGCCATCCTCAACCGTTGACAAGGAATGGTC AAACTCTGATCGTGATGCTTTGGTTGAACAGCAAAAGCTTGTAAAATCAA CTGTTGAAAAAGATATCAAAACTATTTTATTACCTAGCGATGAAGTCGTT TTTATCCGTGGTGTTGCAGGAATTGGAAAATCAACGCTTCTTGACATGTT TACACTAAAATGGGCCAAAAATGAAATATCTAATGgaattgactttgttt tcaaattcaCTTGTAGAGAATTGAATAATGTTTCGACCAATTTCAACAAT CTAGAGCAGCtcttcaaattgaaatttccaGACGTGATGCAAGTCATCAC ATTTAAAAATCTGATGGAGATTTCGGAAAGAGTTTTAATTGTTGTAGATG GTATTGACGAGTTAAGAGATTTATATGAGGTTAGAAACGACACAGTATCA AATGGGAACAGGATTAGTAATAAGGTTTTCGAACTACTTAATCCGAAAAC AGGGTGGCTTTTACACCATAAATCAATAGTTTGTGGACGTCCCAGAGCTA CTGAATTCATCAAAAAACAACTTCCACCAAGTTCAAAACGGAAGACCGTT GAGGTTTGCGGCTttgatgacaaaaatattgaaaaatatattcaaaactt ttttcgtGATAAGAAGGAAAAAGCAGTTTCCGTTCAAACAATAATCGAAA GCTCGTACGATCTGCGTATTATGGCACGTGTACCGGTGTTTTTATACATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00062222-exon-scaffold_362-1491911889:1026599..1027616 | TCONS_00062222-exon-scaffold_362-1491911889:1026599..1027616 | Clytia hemisphaerica | exon |
TCONS_00062222-exon-scaffold_362-1510915933:1026599..1027616 | TCONS_00062222-exon-scaffold_362-1510915933:1026599..1027616 | Clytia hemisphaerica | exon |
TCONS_00062222-exon-scaffold_362-1575043694:1026599..1027616 | TCONS_00062222-exon-scaffold_362-1575043694:1026599..1027616 | Clytia hemisphaerica | exon |
TCONS_00062222-exon-scaffold_362-1491911889:1027817..1028041 | TCONS_00062222-exon-scaffold_362-1491911889:1027817..1028041 | Clytia hemisphaerica | exon |
TCONS_00062222-exon-scaffold_362-1510915933:1027817..1028041 | TCONS_00062222-exon-scaffold_362-1510915933:1027817..1028041 | Clytia hemisphaerica | exon |
TCONS_00062222-exon-scaffold_362-1575043694:1027817..1028041 | TCONS_00062222-exon-scaffold_362-1575043694:1027817..1028041 | Clytia hemisphaerica | exon |
TCONS_00062222-exon-scaffold_362-1491911889:1028516..1029387 | TCONS_00062222-exon-scaffold_362-1491911889:1028516..1029387 | Clytia hemisphaerica | exon |
TCONS_00062222-exon-scaffold_362-1510915933:1028516..1029387 | TCONS_00062222-exon-scaffold_362-1510915933:1028516..1029387 | Clytia hemisphaerica | exon |
TCONS_00062222-exon-scaffold_362-1575043694:1028516..1029387 | TCONS_00062222-exon-scaffold_362-1575043694:1028516..1029387 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_362 | supercontig | scaffold_362:1026599..1029387 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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