TCONS_00062221 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062221
Unique NameTCONS_00062221
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1620

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062221 ID=TCONS_00062221|Name=TCONS_00062221|organism=Clytia hemisphaerica|type=transcript|length=1620bp
TGTACCTTCAGTTGTTTGTTCAATTTGCGGATATACATTTTGTATAAATT
GTTTGACATCagaaagtttttctttgaataGTGGAAACTTATATGGACGC
TTACTGTAGTTTAAAACATACATCTTTCACCAGCCGTACCCTAAAGTTTA
TAGCTAGAAACACAAGAAAAGTACAGTCTGGTCACTGagtatgtttcaat
ttttttatcgtAGAATATACGGGTTAATCGTAATTTTAGATCCCTTTCGT
CTCCTAATACCAATCGAAGCTATAGCAACACTTGAACATAGTTATTTTTT
CAGGCTGTACTGATTCGGGCTTAGTGAATGAAGTTCTAGGTAACGGCGGT
AATGAATCTTTCTTCTAattgtagggaaaaaatttcatgaaattcgAACA
CTAGTGGAATACAATGCAAACAAACTTTACGCGGTGTTCCTTCAAACTAG
TGTTTACGGTTACCATCTTTGTTGCTATGGTCTACCTTTTGCATTATCAA
GAACTGCTACAAGTCAAGATAAAAATGCTCATGTCTTCATCTTCCAACCA
ACCACCATACCATGAAACTGATATCAAGCAAATACAAGAAAAACGTCACA
GACAACTTCAACAATATTGTTCCAACCAAAAGAAACAAACCATGATCAAG
AGCAGGAATCAATTCAGGAAATTTTTCGAACCAAGAGATAAGGAATCATT
AAGAACGTTAAAACAGTTGATATACAACGATAGAGCAAAATTGATCTTTT
GTAGTGTCCCTAAAGTAGCATCTACAAACTGGAAACGTATTTTCCATACA
CTTGAAGGACGCTTTCAAAATCCTACAGATCAAGACGGACGATTGATTCA
CCAAGGTTTGCCAGATATTACCGAGCTGTCAAAACCTGATCTACAATCTC
GTTTAAAAACtcatttttcgtttttattcACTAGACATCCTTTTGAAAGA
GTAGTTTCGGCCTATAGAGATAAGTTGTACAGTTCAAAAGATAAATACCT
ACAACGTAAATATAACAAAATCATTTACAAACTGTATCGGAACGAATCGT
ACACACCGGACAAAACACCCGTAACATTTGAAGAATTCATTCGGTATATT
ATCTATGAATGGAGAGACGGGAAAACGTATCGACTCAACTTACATTGGAG
ACCTGTAACCTCGTTTTGTTTTCCATGTTTACTGAATTACACCTTCATTG
GAAAGTTGGAAACTATAAACCAAGATAGTTACCATATCACAAAGTATATA
AATAATGTGACCAATTTGAATTTAGAGTTGCCAACAATCAGACGTTATAA
AACGGAAAGTCGGACTTCACTTTCTGATTACTATAAGAATATTTCGGATA
GAATTTTGACTGATTTGTATAAAGtatatgaaaatgattttttagcaTTT
GGTTATAGTTTAGATGGAATATTTCGCCGGCTAAAGGTGTGATGCAACTC
ATGGATTTTTTGGTCCAGtgcgcagcagaatggacctttaaaaagcaact
gatcgaaaagattttgtctttggtcggggcctgtgcgcgcaataaattaa
caagtccaggctaaaccaaccgccgatctagaatttttgccccgcctacc
cgcgcgatgtttgacctatg
Run BLAST on NCBI

protein sequence of TCONS_00062221-protein

>TCONS_00062221-protein ID=TCONS_00062221-protein|Name=TCONS_00062221-protein|organism=Clytia hemisphaerica|type=polypeptide|length=342bp
MQTNFTRCSFKLVFTVTIFVAMVYLLHYQELLQVKIKMLMSSSSNQPPYH
ETDIKQIQEKRHRQLQQYCSNQKKQTMIKSRNQFRKFFEPRDKESLRTLK
QLIYNDRAKLIFCSVPKVASTNWKRIFHTLEGRFQNPTDQDGRLIHQGLP
DITELSKPDLQSRLKTHFSFLFTRHPFERVVSAYRDKLYSSKDKYLQRKY
NKIIYKLYRNESYTPDKTPVTFEEFIRYIIYEWRDGKTYRLNLHWRPVTS
FCFPCLLNYTFIGKLETINQDSYHITKYINNVTNLNLELPTIRRYKTESR
TSLSDYYKNISDRILTDLYKVYENDFLAFGYSLDGIFRRLKV
Run BLAST on NCBI

transcript from alignment at scaffold_362:1013747..1015941+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062221 ID=TCONS_00062221|Name=TCONS_00062221|organism=Clytia hemisphaerica|type=transcript|length=2195bp|location=Sequence derived from alignment at scaffold_362:1013747..1015941+ (Clytia hemisphaerica)
TGTACCTTCAGTTGTTTGTTCAATTTGCGGATATACATTTTGTATAAATT
GTTTGACATCagaaagtttttctttgaataGTGGAAACTTATATGGACGC
TTACTGTAGTTTAAAACATACATCTTTCACCAGCCGTACCCTAAAGTTTA
TAGCTAGAAACACAAGAAAAGTACAGTCTGGTCACTGagtatgtttcaat
ttttttatcgtAGAATATACGGGTTAATCGTAATTTTAGATCCCTTTCGT
CTCCTAATACCAATCGAAGCTATAGCAACACTTGAACATAGTTATTTTTT
CAGGCTGTACTGATTCGGGCTTAGTGAATGAAGTTCTAGGTAACGGCGGT
AATGAATCTTTCTTCTAattgtagggaaaaaatttcatgaaattcgAACA
CTAGTGGAATACAATGCAAACAAACTTTACGCGGTGTTCCTTCAAACTAG
TGTTTACGGTTACCATCTTTGTTGCTATGGTCTACCTTTTGCATTATCAA
GAACTGCTACAAGTCAAGATAAAAATGGTAAATTCTTTACTACTGTacgt
cccgggggggggggcactcgatctgaaaacgaccatacgttcggcccaaa
atttggcttctaaaatcggacccttacagtgcagtgaattatCATACCCT
TACGGtataagggcgaaaatttttgcaattttccaagaaaatgtggaatt
tttcctccaaaattgaccaattttgtgccaattttaccaaaaaattggcc
ttatATCActatttcctacccttacagtgcagtccagtgcagttttgtaa
tttcctacccttacagtgcactagctgaactatgaaaaacctaccctaaa
gggccgaacgtctggtaggtcatttaccttgagtgcccccccccccgggc
tgtACGTATAACCAAGCAACTATGGAAAATAGTTCCTTATGGGTTTTTAC
TGAAGATGTCTTAAAAGACAACACTTCAGGCTTTCGCCAAAGGAACAAGT
TGTGCCAACGCTTGAGGGATATTGTGCAGTTATCCTCACCATATCCTACT
CTCTCTTAAATTAGGTTAGTCTAGCATTTTAAACTATGATCATTTTCTTT
AGCTCATGTCTTCATCTTCCAACCAACCACCATACCATGAAACTGATATC
AAGCAAATACAAGAAAAACGTCACAGACAACTTCAACAATATTGTTCCAA
CCAAAAGAAACAAACCATGATCAAGAGCAGGAATCAATTCAGGAAATTTT
TCGAACCAAGAGATAAGGAATCATTAAGAACGTTAAAACAGTTGATATAC
AACGATAGAGCAAAATTGATCTTTTGTAGTGTCCCTAAAGTAGCATCTAC
AAACTGGAAACGTATTTTCCATACACTTGAAGGACGCTTTCAAAATCCTA
CAGATCAAGACGGACGATTGATTCACCAAGGTTTGCCAGATATTACCGAG
CTGTCAAAACCTGATCTACAATCTCGTTTAAAAACtcatttttcgttttt
attcACTAGACATCCTTTTGAAAGAGTAGTTTCGGCCTATAGAGATAAGT
TGTACAGTTCAAAAGATAAATACCTACAACGTAAATATAACAAAATCATT
TACAAACTGTATCGGAACGAATCGTACACACCGGACAAAACACCCGTAAC
ATTTGAAGAATTCATTCGGTATATTATCTATGAATGGAGAGACGGGAAAA
CGTATCGACTCAACTTACATTGGAGACCTGTAACCTCGTTTTGTTTTCCA
TGTTTACTGAATTACACCTTCATTGGAAAGTTGGAAACTATAAACCAAGA
TAGTTACCATATCACAAAGTATATAAATAATGTGACCAATTTGAATTTAG
AGTTGCCAACAATCAGACGTTATAAAACGGAAAGTCGGACTTCACTTTCT
GATTACTATAAGAATATTTCGGATAGAATTTTGACTGATTTGTATAAAGt
atatgaaaatgattttttagcaTTTGGTTATAGTTTAGATGGAATATTTC
GCCGGCTAAAGGTGTGATGCAACTCATGGATTTTTTGGTCCAGtgcgcag
cagaatggacctttaaaaagcaactgatcgaaaagattttgtctttggtc
ggggcctgtgcgcgcaataaattaacaagtccaggctaaaccaaccgccg
atctagaatttttgccccgcctacccgcgcgatgtttgacctatg

Coding sequence (CDS) from alignment at scaffold_362:1013747..1015941+

>TCONS_00062221 ID=TCONS_00062221|Name=TCONS_00062221|organism=Clytia hemisphaerica|type=CDS|length=2058bp|location=Sequence derived from alignment at scaffold_362:1013747..1015941+ (Clytia hemisphaerica)
ATGCAAACAAACTTTACGCGGTGTTCCTTCAAACTAGTGTTTACGGTTAC
CATCTTTGTTGCTATGGTCTACCTTTTGCATTATCAAGAACTGCTACAAG
TCAAGATAAAAATGCTCATGTCTTCATCTTCCAACCAACCACCATACCAT
GAAACTGATATCAAGCAAATACAAGAAAAACGTCACAGACAACTTCAACA
ATATTGTTCCAACCAAAAGAAACAAACCATGATCAAGAGCAGGAATCAAT
TCAGGAAATTTTTCGAACCAAGAGATAAGGAATCATTAAGAACGTTAAAA
CAGTTGATATACAACGATAGAGCAAAATTGATCTTTTGTAGTGTCCCTAA
AGTAGCATCTACAAACTGGAAACGTATTTTCCATACACTTGAAGGACGCT
TTCAAAATCCTACAGATCAAGACGGACGATTGATTCACCAAGGTTTGCCA
GATATTACCGAGCTGTCAAAACCTGATCTACAATCTCGTTTAAAAACtca
tttttcgtttttattcACTAGACATCCTTTTGAAAGAGTAGTTTCGGCCT
ATAGAGATAAGTTGTACAGTTCAAAAGATAAATACCTACAACGTAAATAT
AACAAAATCATTTACAAACTGTATCGGAACGAATCGTACACACCGGACAA
AACACCCGTAACATTTGAAGAATTCATTCGGTATATTATCTATGAATGGA
GAGACGGGAAAACGTATCGACTCAACTTACATTGGAGACCTGTAACCTCG
TTTTGTTTTCCATGTTTACTGAATTACACCTTCATTGGAAAGTTGGAAAC
TATAAACCAAGATAGTTACCATATCACAAAGTATATAAATAATGTGACCA
ATTTGAATTTAGAGTTGCCAACAATCAGACGTTATAAAACGGAAAGTCGG
ACTTCACTTTCTGATTACTATAAGAATATTTCGGATAGAATTTTGACTGA
TTTGTATAAAGtatatgaaaatgattttttagcaTTTGGTTATAGTTTAG
ATGGAATATTTCGCCGGCTAAAGGTGTGAATGCAAACAAACTTTACGCGG
TGTTCCTTCAAACTAGTGTTTACGGTTACCATCTTTGTTGCTATGGTCTA
CCTTTTGCATTATCAAGAACTGCTACAAGTCAAGATAAAAATGCTCATGT
CTTCATCTTCCAACCAACCACCATACCATGAAACTGATATCAAGCAAATA
CAAGAAAAACGTCACAGACAACTTCAACAATATTGTTCCAACCAAAAGAA
ACAAACCATGATCAAGAGCAGGAATCAATTCAGGAAATTTTTCGAACCAA
GAGATAAGGAATCATTAAGAACGTTAAAACAGTTGATATACAACGATAGA
GCAAAATTGATCTTTTGTAGTGTCCCTAAAGTAGCATCTACAAACTGGAA
ACGTATTTTCCATACACTTGAAGGACGCTTTCAAAATCCTACAGATCAAG
ACGGACGATTGATTCACCAAGGTTTGCCAGATATTACCGAGCTGTCAAAA
CCTGATCTACAATCTCGTTTAAAAACtcatttttcgtttttattcACTAG
ACATCCTTTTGAAAGAGTAGTTTCGGCCTATAGAGATAAGTTGTACAGTT
CAAAAGATAAATACCTACAACGTAAATATAACAAAATCATTTACAAACTG
TATCGGAACGAATCGTACACACCGGACAAAACACCCGTAACATTTGAAGA
ATTCATTCGGTATATTATCTATGAATGGAGAGACGGGAAAACGTATCGAC
TCAACTTACATTGGAGACCTGTAACCTCGTTTTGTTTTCCATGTTTACTG
AATTACACCTTCATTGGAAAGTTGGAAACTATAAACCAAGATAGTTACCA
TATCACAAAGTATATAAATAATGTGACCAATTTGAATTTAGAGTTGCCAA
CAATCAGACGTTATAAAACGGAAAGTCGGACTTCACTTTCTGATTACTAT
AAGAATATTTCGGATAGAATTTTGACTGATTTGTATAAAGtatatgaaaa
tgattttttagcaTTTGGTTATAGTTTAGATGGAATATTTCGCCGGCTAA
AGGTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039004XLOC_039004Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062221-proteinTCONS_00062221-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062221-exon-scaffold_362-1491911889:1013747..1014273TCONS_00062221-exon-scaffold_362-1491911889:1013747..1014273Clytia hemisphaericaexon
TCONS_00062221-exon-scaffold_362-1510915933:1013747..1014273TCONS_00062221-exon-scaffold_362-1510915933:1013747..1014273Clytia hemisphaericaexon
TCONS_00062221-exon-scaffold_362-1575043694:1013747..1014273TCONS_00062221-exon-scaffold_362-1575043694:1013747..1014273Clytia hemisphaericaexon
TCONS_00062221-exon-scaffold_362-1491911889:1014849..1015941TCONS_00062221-exon-scaffold_362-1491911889:1014849..1015941Clytia hemisphaericaexon
TCONS_00062221-exon-scaffold_362-1510915933:1014849..1015941TCONS_00062221-exon-scaffold_362-1510915933:1014849..1015941Clytia hemisphaericaexon
TCONS_00062221-exon-scaffold_362-1575043694:1014849..1015941TCONS_00062221-exon-scaffold_362-1575043694:1014849..1015941Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:1013747..1015941 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.311954	0.307869	0.240203	0.224706	0.890115	0.631268	0.430346	0.368956	0.0215025	0	0.0335246	0.0509058	4.45052	4.19326	0.107236	0.0466825	2.73998	1.56745	5.34898	4.88022	4.14089	3.21638	1.67133	1.38394	2.22532	1.63158	3.82054	3.99244	14.0519	11.6112
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005331Sulfotransferase
Vocabulary: Molecular Function
TermDefinition
GO:0008146sulfotransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008146 sulfotransferase activity
Blast
[Close]
BLAST of TCONS_00062221 vs. Swiss-Prot (Human)
Match: CHSTB (Carbohydrate sulfotransferase 11 OS=Homo sapiens GN=CHST11 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.820e-38
Identity = 91/259 (35.14%), Postives = 138/259 (53.28%), Query Frame = 3 
Query:  666 RKFFEPRDKESLRTLKQLIYNDRAKLIFCSVPKVASTNWKRIFHTLEGR--FQNPTDQDGRLIH--QGLPDITELSKPDLQSRLKTHFSFLFTRHPFERVVSAYRDKLYSSKDKYLQRKYN-KIIYKLYRNESYTPDKTP--VTFEEFIRYIIYEWRDGKTYR---LNLHWRPVTSFCFPCLLNYTFIGKLETINQDSYHITKYINNVTNLNLELPTIRRYKTESRTSLSDYYKNISDRILTDLYKVYENDFLAFGYSL 1412
            R+   P D      LK L+ ++  +LI+C VPKVA TNWKR+   L GR  + +P +      H    L  + + S P++  RLK++  FLF R PFER+VSAYR+K     +    ++Y  KII +  +N +    +    V FEEF+ Y+I    D  T R    N HW+ V S C PC ++Y  +GK ET+ +DS ++ +         L+ PT  +    +    +++++NIS    T LY+VY+ DFL F YS+
Sbjct:   99 RRVLTPND------LKHLVVDEDHELIYCYVPKVACTNWKRLMMVLTGRGKYSDPMEIPANEAHVSANLKTLNQYSIPEINHRLKSYMKFLFVREPFERLVSAYRNKFTQKYNISFHKRYGTKIIKRQRKNATQEALRKGDDVKFEEFVAYLI----DPHTQREEPFNEHWQTVYSLCHPCHIHYDLVGKYETLEEDSNYVLQLAG--VGSYLKFPTYAKSTRTTDEMTTEFFQNISSEHQTQLYEVYKLDFLMFNYSV 345
The following BLAST results are available for this feature:
BLAST of TCONS_00062221 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHSTB2.820e-3835.14Carbohydrate sulfotransferase 11 OS=Homo sapiens G... [more]
back to top