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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062208 ID=TCONS_00062208|Name=TCONS_00062208|organism=Clytia hemisphaerica|type=transcript|length=1615bpRun BLAST on NCBI protein sequence of TCONS_00062208-protein >TCONS_00062208-protein ID=TCONS_00062208-protein|Name=TCONS_00062208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp MKHNICMVSDFFYPNMGGVESHIYQLSQCLLARGHKVIVVTHAYGNRKGVRun BLAST on NCBI transcript from alignment at scaffold_362:733540..751987+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062208 ID=TCONS_00062208|Name=TCONS_00062208|organism=Clytia hemisphaerica|type=transcript|length=18448bp|location=Sequence derived from alignment at scaffold_362:733540..751987+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_362:733540..751987+ >TCONS_00062208 ID=TCONS_00062208|Name=TCONS_00062208|organism=Clytia hemisphaerica|type=CDS|length=19755bp|location=Sequence derived from alignment at scaffold_362:733540..751987+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062208 vs. Swiss-Prot (Human)
Match: PIGA (Phosphatidylinositol N-acetylglucosaminyltransferase subunit A OS=Homo sapiens GN=PIGA PE=1 SV=1) HSP 1 Score: 531.946 bits (1369), Expect = 0.000e+0 Identity = 253/385 (65.71%), Postives = 312/385 (81.04%), Query Frame = 1
Query: 187 HNICMVSDFFYPNMGGVESHIYQLSQCLLARGHKVIVVTHAYGNRKGVRYLTNNLKVYYLPFSIMYINVIQPTGFVTLPMFRDIFIREKITIVHGHSAFSVLCQESIMHGKSMGLKTVFTDHSLFGFADVSSILTNKLLEFTLTDIDHVICVSNTSKENTVLRASIHPDKVSVIANAVDSDVFTPDPTKKDASKITIAVASRLVYRKGIDLLAGVIPILCQKFPQVQFIIGGDGPKRILLEEVREKYQLHERVQLLGELKHKDVRNLLVQGDIFLNTSLTEAFCIAIVEAASCGLQVVSTNVGGVFEVLPSDMIYLAEPSVQDITRVMEQAISDRVKGHVIDPFVLNQRIKSMYTWQNVSRKTETVYDSISNNVELSIMERLERF 1341
HNICMVSDFFYPNMGGVESHIYQLSQCL+ RGHKVI+VTHAYGNRKG+RYLT+ LKVYYLP +MY T F +LP+ R IF+RE++TI+H HS+FS + +++ H K+MGL+TVFTDHSLFGFADVSS+LTNKLL +L D +H+ICVS TSKENTVLRA+++P+ VSVI NAVD FTPDP ++ S ITI V SRLVYRKGIDLL+G+IP LCQK+P + FIIGG+GPKRI+LEEVRE+YQLH+RV+LLG L+HKDVRN+LVQG IFLNTSLTEAFC+AIVEAASCGLQVVST VGG+ EVLP ++I L EPSV+ + +E+AI G + P ++ +K+ YTW+NV+ +TE VYD +S L + +RL+R
Sbjct: 33 HNICMVSDFFYPNMGGVESHIYQLSQCLIERGHKVIIVTHAYGNRKGIRYLTSGLKVYYLPLKVMYNQSTATTLFHSLPLLRYIFVRERVTIIHSHSSFSAMAHDALFHAKTMGLQTVFTDHSLFGFADVSSVLTNKLLTVSLCDTNHIICVSYTSKENTVLRAALNPEIVSVIPNAVDPTDFTPDPFRRHDS-ITIVVVSRLVYRKGIDLLSGIIPELCQKYPDLNFIIGGEGPKRIILEEVRERYQLHDRVRLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIVEAASCGLQVVSTRVGGIPEVLPENLIILCEPSVKSLCEGLEKAIFQLKSGTLPAPENIHNIVKTFYTWRNVAERTEKVYDRVSVEAVLPMDKRLDRL 416 The following BLAST results are available for this feature:
BLAST of TCONS_00062208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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