|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062191 ID=TCONS_00062191|Name=TCONS_00062191|organism=Clytia hemisphaerica|type=transcript|length=1155bp
ACGTAAATTTTTTTACGTGTTTGATTATCTCATCATGGCTTGCGTACGAC
GAATCATTCTAACAATCACAATCTATTCAACGTTATCAACAATAACAAAT
TGTCAAATCTTGGAATTGAAAACACAAGAAGATCTTGAAgaaaacatttt
acaaaatgaaaaagtttggtTAGTTTCAATCCATCAGACAGAGAATCAAC
AAAGAGAAATTGTACATACTGAGGACCTTTATAGAGGAATATTCAACGCT
GCGCAGATTGAAAGAAGACAGATAGGCACAATTTTAGATTTTAGCCAAAG
AAACAaacttcattattttcccatacGGCTCAAAACGTTCAAAAcaaacg
aaacaaaaacatGCTGTGAATCTAAATGAGGCTTTGAAGATCGTTTCGGA
ATTTATCCCCGATATCACAACCCGATTGGATTCGAATGTGGATGGGACGA
ATTCACAATTACGTGcattctttcaaaagatttttatgactcgaccaatc
aaattcccTGTCATCTACTTTACAGAAAACAAAGAACCACCCATTGAAAT
TCGAGCGTTAGCTTTGAAATATTCAAGTCTTTTTCAATTTGGAGTGATTT
CAAGACCAACCAAAAACGCTTTAAACGCCTACGCAATAAAATCACTACCA
CACTTCAGTGGATACATTATAGAGAATGTGACGTCACAGCCTCGCTTGAA
GAATTACATTTACCAAGGCCAGTTAAACGGTCCATCTGAGTATCCTTTCC
TTGTACACTTCTTGTATTTGCTACATAAAAATCATTTCAAGGAATTACCA
AAAGTAAGGAAGCCGAAAAGTAGTGATGACGTCAGAAATGCGGGAAAAGA
TGATGAGATTGAACTTGATTTGGAGGAGACGTTTAGTGAAGATTTTGAAT
TATTTCATGAACTTTACAAAATGTTCCCCATGGAGTATGGGACCAAGGAT
GAATTATAGACCAACATGTTTGTAGATCACAGAAAAAAAGCGTTCAAGAT
TAATTAGATTTCTATACTCAGTGTATCTTTCATTGGAGCTTTTGTAAAAT
CAGGATTATTTTGGCTAATTCCTTTTCTTTTCTTTGTTGTTTTAATTTTT
CCTATGATTATTTTGAAAAAGATTAAAATGAATGATCAATATATTGACAA
ATGCT Run BLAST on NCBI transcript from alignment at scaffold_362:521104..525175+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062191 ID=TCONS_00062191|Name=TCONS_00062191|organism=Clytia hemisphaerica|type=transcript|length=4072bp|location=Sequence derived from alignment at scaffold_362:521104..525175+ (Clytia hemisphaerica)
ACGTAAATTTTTTTACGTGTTTGATTATCTCATCATGGCTTGCGTAAGTG
ATATTTTCGTGCTTGTTCAAAGTAACTTTCGGATAATTCTTTTATTGCTA
TTAGGTTTTATGTGAATTTAAAAATCTTAAATCTTTACTCGTTTTAATTA
TATTTCACCTTGTTAGTGTTTTTCCACAGTACAAAGCGAAAAGCATCACT
TTCTCTAGACCCAATGAGGAACGTGTTTAACCAGGGAGAATAAAATGAAG
CGATAAAGTGATTTTCAGCCTAATTTCCTAGTGGAAATAAGGGTGGGTAA
CAAAGCTGTTAAAATGTATTCGTCTAAGGCACGGACCTTCACAGCCAGCA
GAGGTAGGCCACCGTTACAGTTTGAACGGGCTCTTTCTAAATATCAATTT
TTGGTAAAAAATAAGACCCTCATTAAAAAGATTTTCACCATAATAGAAAA
CAATTAGGCCTGTCAAATGCAAAATCTGAAATATTTCATCAAAAGTCAAC
TCTGGTAAATTTATAAGATTGTCAGATTTTATCAAAGTCTGAAAAGGAGG
CAAACCAGCAGTGTCCCCGTACTTAATTTTACCTAATTAACCTTCTGGAG
TTTAATTACCTAAACAGCATTTCACAGTTTTCTTCATTATAAACATTAGG
TACGACGAATCATTCTAACAATCACAATCTATTCAACGTTATCAACAATA
ACAAATTGTCAAATCTTGGAATTGAAAACACAAGAAGATCTTGAAgaaaa
cattttacaaaatgaaaaagtttggtTAGTTTCAATCCATCAGACAGAGA
ATCAACAAAGAGAAATTGTACATACTGAGGACCTTTATAGAGGAATATTC
AACGCTGCGCAGATTGAAAGAAGACAGATAGGCACAATTTTAGATGTAAg
tgaccaaaattttaaaatatctttctccAAAGAATGTCGATGTTGACCTT
TGTGTAAAGCTAAGCCTACACTGATGTCTTTTTCCTAGCGTCTGCAAAAT
GCAAGGTTCGCCGGATTTCCCTTTCTCTAATGAATGATATCATTATATAT
CCTATATTACTAAATcatgttggacggtgaaaaagaatgcggctattata
ttttcatttatattaCTGTATTATCATGATTataacgactccagtctagt
ctCGATGCCTTGATTACAGTTTGTTTTTGTACTTGTTTGGTCATTGAAAT
GTAGGTCTTGTCACGTGACATAGTGTACTTAAATCTTATATgtaatttgt
ttttcaaaagtgAAATTTAAGATATAAATAAATTCATAAAGAGTGTTATA
GATAAACTATAAAACGAATTATGAAGATTTTCCCTTTCATCTGATATTCT
TTTTCCATACATACTGTATATCCCAATAAACAGAAAGGGTCCGAGCAATA
AACCCTAATGGCGTGCGATAGCTAATGAGCTTTAAGTAGACCATGTCACG
TGACAAGACCCACACCCCAGTGTCCAAACAATCAAAAGAACAAACTGTAA
TCAAGGCATTGACACAGATaagactaccttaagggaacttattttggccg
gaactaattttggcgaatttgacgaaattagttcccaccaaaattaaata
atttgctcactcgccaaaataagttctcgccaaaattaaattttttggta
ttttgcctaaataNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGGCGTGCGATAGCTAATGAGCTTTAAGTAGACCATGT
CACGTGACAAGACCCACACCCCAGTGTCCAAACAATCAAAAGAACAAACT
GTAACCAAGGCCTACACAGATaagactaccttaagggaacttattttggc
cggaactaattttggcgaatttggcgaaattagttcccaccaaaattaaa
taatttgctcactcgccaaaataagttctcgccaaaattaaattttttgg
tattttgcctaaataacttcttgagttcACAAATAACGCCTCAAATAAGG
CAAagtagaacagatttacgctgtctttcgccaaaattagttcccaccaa
aattaaaaaaattcatcaatcgTCAaattaagttctcgccaaaattaaaa
attttcaggatttttgccgCTCTGACCGATAACCTAACAAGCTGCTTTTC
ATTCTGTTTCAGAGCAGTTTAGCCAAAGAAACAaacttcattattttccc
atacGGCTCAAAACGTTCAAAAcaaacgaaacaaaaacatGCTGTGAATC
TAAATGAGGCTTTGAAGATCGTTTCGGAATTTATCCCCGATATCACAACC
CGATTGGATTCGAATGTGGATGGGACGAATTCACAATTACGTGcattctt
tcaaaagatttttatgactcgaccaatcaaattcccTGTCATCTACTTTA
CAGGTAATCCATCTCTTTTTGGCCCAACCTCTCGCTCggttttaaaggga
cataaaagtagtaaacattgcgcgaaccacgtgtcattaaagagaacaat
taaaatcacatgtccaaaacaaacttgtgaaacaatagaaacaatcaaaa
atcagccatatttgttttgattttgacacgtgacatttgttttgattttg
tatcccacttcatacggtttgtttacaaagttcgatagtacttttatgtc
cctttaaaggaCATAAtttagaacacccccttctcacagacccgctggtc
ccccatcccactggaaaaatagactaaaatatCGTCTTCAGTGGAATAAG
TTATACTTTAATTGTTGtacccgctgaaaataatcaaataagcaaatcct
cattGAAAATTATTAATTCCATCCTCAgtgaattttctggctagaaaaca
agggaatttaaatccccagccataaaaacatgggaatatcaaacTCTATC
GAGTGTTAAAGCGTTATTTTTACTCCCCCTGGCTAAAAAGATCCCACTGG
GTCAGTCAGAAGGGGTTGTTATCTGCTCCAAGTAATCTCCCATGGACACA
AACCCTGGTTGAAACAATGGTTGAAAAAATCCTAAGTCTGTGAGAAAGTA
GCCTATACTAGACATCACGCGCGTTTTATTTTACGCAATTAACGTCTATT
CCACTTTGCGACTTTTTCGAATGTTTTGAGCCCGGGTTTTCGGGCTCTAA
ACATTCGAATTTTTGACGTCACTTTTAATTTTCGAAGCTCCTGTTGTAGC
AAAAGAATCGAATTTGCGTCAAAACACTTGAAAGGCTTTCTATTTTTCGA
AAATCGTCAAAGTGAAACTCACTAAGAAACGAGATGAAAAATCCCGGGTT
TTAGTGAGGTGCACGCTAGTGAGAAAGGGGTATAACATGAAATTTAAATC
TTTTCATAATTCCTCTAATCAAATGATATTTTATCTTTATAGAAAACAAA
GAACCACCCATTGAAATTCGAGCGTTAGCTTTGAAATATTCAAGTCTTTT
TCAATTTGGAGTGATTTCAAGACCAACCAAAAACGCTTTAAACGCCTACG
CAATAAAATCACTACCACACTTCAGTGGATACATTATAGAGAATGTGACG
TCACAGCCTCGCTTGAAGAATTACATTTACCAAGGCCAGTTAAACGGTCC
ATCTGAGTATCCTTTCCTTGTACACTTCTTGTATTTGCTACATAAAAATC
ATTTCAAGGAATTACCAAAAGTAAGGAAGCCGAAAAGTAGTGATGACGTC
AGAAATGCGGGAAAAGATGATGAGATTGAACTTGATTTGGAGGAGACGTT
TAGTGAAGATTTTGAATTATTTCATGAACTTTACAAAATGTTCCCCATGG
AGTATGGGACCAAGGATGAATTATAGACCAACATGTTTGTAGATCACAGA
AAAAAAGCGTTCAAGATTAATTAGATTTCTATACTCAGTGTATCTTTCAT
TGGAGCTTTTGTAAAATCAGGATTATTTTGGCTAATTCCTTTTCTTTTCT
TTGTTGTTTTAATTTTTCCTATGATTATTTTGAAAAAGATTAAAATGAAT
GATCAATATATTGACAAATGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062191-exon-scaffold_362-1491911889:521104..521146 | TCONS_00062191-exon-scaffold_362-1491911889:521104..521146 | Clytia hemisphaerica | exon |
| TCONS_00062191-exon-scaffold_362-1510915933:521104..521146 | TCONS_00062191-exon-scaffold_362-1510915933:521104..521146 | Clytia hemisphaerica | exon |
| TCONS_00062191-exon-scaffold_362-1575043694:521104..521146 | TCONS_00062191-exon-scaffold_362-1575043694:521104..521146 | Clytia hemisphaerica | exon |
| TCONS_00062191-exon-scaffold_362-1491911889:521753..521998 | TCONS_00062191-exon-scaffold_362-1491911889:521753..521998 | Clytia hemisphaerica | exon |
| TCONS_00062191-exon-scaffold_362-1510915933:521753..521998 | TCONS_00062191-exon-scaffold_362-1510915933:521753..521998 | Clytia hemisphaerica | exon |
| TCONS_00062191-exon-scaffold_362-1575043694:521753..521998 | TCONS_00062191-exon-scaffold_362-1575043694:521753..521998 | Clytia hemisphaerica | exon |
| TCONS_00062191-exon-scaffold_362-1491911889:523321..523556 | TCONS_00062191-exon-scaffold_362-1491911889:523321..523556 | Clytia hemisphaerica | exon |
| TCONS_00062191-exon-scaffold_362-1510915933:523321..523556 | TCONS_00062191-exon-scaffold_362-1510915933:523321..523556 | Clytia hemisphaerica | exon |
| TCONS_00062191-exon-scaffold_362-1575043694:523321..523556 | TCONS_00062191-exon-scaffold_362-1575043694:523321..523556 | Clytia hemisphaerica | exon |
| TCONS_00062191-exon-scaffold_362-1491911889:524546..525175 | TCONS_00062191-exon-scaffold_362-1491911889:524546..525175 | Clytia hemisphaerica | exon |
| TCONS_00062191-exon-scaffold_362-1510915933:524546..525175 | TCONS_00062191-exon-scaffold_362-1510915933:524546..525175 | Clytia hemisphaerica | exon |
| TCONS_00062191-exon-scaffold_362-1575043694:524546..525175 | TCONS_00062191-exon-scaffold_362-1575043694:524546..525175 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:521104..525175 + |
Blast
The following BLAST results are available for this feature:
|
