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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062190 ID=TCONS_00062190|Name=TCONS_00062190|organism=Clytia hemisphaerica|type=transcript|length=1159bp
ACATTCAGATGACGGCAAAAATTTTGGTATGAGTTTTTCGCGGTACGACG
AATCATTCTAACAATCACAATCTATTCAACGTTATCAACAATAACAAATT
GTCAAATCTTGGAATTGAAAACACAAGAAGATCTTGAAgaaaacatttta
caaaatgaaaaagtttggtTAGTTTCAATCCATCAGACAGAGAATCAACA
AAGAGAAATTGTACATACTGAGGACCTTTATAGAGGAATATTCAACGCTG
CGCAGATTGAAAGAAGACAGATAGGCACAATTTTAGATAGCAGTTTAGCC
AAAGAAACAaacttcattattttcccatacGGCTCAAAACGTTCAAAAca
aacgaaacaaaaacatGCTGTGAATCTAAATGAGGCTTTGAAGATCGTTT
CGGAATTTATCCCCGATATCACAACCCGATTGGATTCGAATGTGGATGGG
ACGAATTCACAATTACGTGcattctttcaaaagatttttatgactcgacc
aatcaaattcccTGTCATCTACTTTACAGAAAACAAAGAACCACCCATTG
AAATTCGAGCGTTAGCTTTGAAATATTCAAGTCTTTTTCAATTTGGAGTG
ATTTCAAGACCAACCAAAAACGCTTTAAACGCCTACGCAATAAAATCACT
ACCACACTTCAGTGGATACATTATAGAGAATGTGACGTCACAGCCTCGCT
TGAAGAATTACATTTACCAAGGCCAGTTAAACGGTCCATCTGAGTATCCT
TTCCTTGTACACTTCTTGTATTTGCTACATAAAAATCATTTCAAGGAATT
ACCAAAAGTAAGGAAGCCGAAAAGTAGTGATGACGTCAGAAATGCGGGAA
AAGATGATGAGATTGAACTTGATTTGGAGGAGACGTTTAGTGAAGATTTT
GAATTATTTCATGAACTTTACAAAATGTTCCCCATGGAGTATGGGACCAA
GGATGAATTATAGACCAACATGTTTGTAGATCACAGAAAAAAAGCGTTCA
AGATTAATTAGATTTCTATACTCAGTGTATCTTTCATTGGAGCTTTTGTA
AAATCAGGATTATTTTGGCTAATTCCTTTTCTTTTCTTTGTTGTTTTAAT
TTTTCCTATGATTATTTTGAAAAAGATTAAAATGAATGATCAATATATTG
ACAAATGCT Run BLAST on NCBI transcript from alignment at scaffold_362:520975..525175+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062190 ID=TCONS_00062190|Name=TCONS_00062190|organism=Clytia hemisphaerica|type=transcript|length=4201bp|location=Sequence derived from alignment at scaffold_362:520975..525175+ (Clytia hemisphaerica)
ACATTCAGATGACGGCAAAAATTTTGGTATGAGTTTTTCGCGGTAATGTT
ATTCGTTGGTAATGAAATATTTTgtgaaatgattttttaagaAGATTCTT
TATTAGTAAAGTGAAACATATATCAACCCACGTAAATTTTTTTACGTGTT
TGATTATCTCATCATGGCTTGCGTAAGTGATATTTTCGTGCTTGTTCAAA
GTAACTTTCGGATAATTCTTTTATTGCTATTAGGTTTTATGTGAATTTAA
AAATCTTAAATCTTTACTCGTTTTAATTATATTTCACCTTGTTAGTGTTT
TTCCACAGTACAAAGCGAAAAGCATCACTTTCTCTAGACCCAATGAGGAA
CGTGTTTAACCAGGGAGAATAAAATGAAGCGATAAAGTGATTTTCAGCCT
AATTTCCTAGTGGAAATAAGGGTGGGTAACAAAGCTGTTAAAATGTATTC
GTCTAAGGCACGGACCTTCACAGCCAGCAGAGGTAGGCCACCGTTACAGT
TTGAACGGGCTCTTTCTAAATATCAATTTTTGGTAAAAAATAAGACCCTC
ATTAAAAAGATTTTCACCATAATAGAAAACAATTAGGCCTGTCAAATGCA
AAATCTGAAATATTTCATCAAAAGTCAACTCTGGTAAATTTATAAGATTG
TCAGATTTTATCAAAGTCTGAAAAGGAGGCAAACCAGCAGTGTCCCCGTA
CTTAATTTTACCTAATTAACCTTCTGGAGTTTAATTACCTAAACAGCATT
TCACAGTTTTCTTCATTATAAACATTAGGTACGACGAATCATTCTAACAA
TCACAATCTATTCAACGTTATCAACAATAACAAATTGTCAAATCTTGGAA
TTGAAAACACAAGAAGATCTTGAAgaaaacattttacaaaatgaaaaagt
ttggtTAGTTTCAATCCATCAGACAGAGAATCAACAAAGAGAAATTGTAC
ATACTGAGGACCTTTATAGAGGAATATTCAACGCTGCGCAGATTGAAAGA
AGACAGATAGGCACAATTTTAGATGTAAgtgaccaaaattttaaaatatc
tttctccAAAGAATGTCGATGTTGACCTTTGTGTAAAGCTAAGCCTACAC
TGATGTCTTTTTCCTAGCGTCTGCAAAATGCAAGGTTCGCCGGATTTCCC
TTTCTCTAATGAATGATATCATTATATATCCTATATTACTAAATcatgtt
ggacggtgaaaaagaatgcggctattatattttcatttatattaCTGTAT
TATCATGATTataacgactccagtctagtctCGATGCCTTGATTACAGTT
TGTTTTTGTACTTGTTTGGTCATTGAAATGTAGGTCTTGTCACGTGACAT
AGTGTACTTAAATCTTATATgtaatttgtttttcaaaagtgAAATTTAAG
ATATAAATAAATTCATAAAGAGTGTTATAGATAAACTATAAAACGAATTA
TGAAGATTTTCCCTTTCATCTGATATTCTTTTTCCATACATACTGTATAT
CCCAATAAACAGAAAGGGTCCGAGCAATAAACCCTAATGGCGTGCGATAG
CTAATGAGCTTTAAGTAGACCATGTCACGTGACAAGACCCACACCCCAGT
GTCCAAACAATCAAAAGAACAAACTGTAATCAAGGCATTGACACAGATaa
gactaccttaagggaacttattttggccggaactaattttggcgaatttg
acgaaattagttcccaccaaaattaaataatttgctcactcgccaaaata
agttctcgccaaaattaaattttttggtattttgcctaaataNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGTGCG
ATAGCTAATGAGCTTTAAGTAGACCATGTCACGTGACAAGACCCACACCC
CAGTGTCCAAACAATCAAAAGAACAAACTGTAACCAAGGCCTACACAGAT
aagactaccttaagggaacttattttggccggaactaattttggcgaatt
tggcgaaattagttcccaccaaaattaaataatttgctcactcgccaaaa
taagttctcgccaaaattaaattttttggtattttgcctaaataacttct
tgagttcACAAATAACGCCTCAAATAAGGCAAagtagaacagatttacgc
tgtctttcgccaaaattagttcccaccaaaattaaaaaaattcatcaatc
gTCAaattaagttctcgccaaaattaaaaattttcaggatttttgccgCT
CTGACCGATAACCTAACAAGCTGCTTTTCATTCTGTTTCAGAGCAGTTTA
GCCAAAGAAACAaacttcattattttcccatacGGCTCAAAACGTTCAAA
AcaaacgaaacaaaaacatGCTGTGAATCTAAATGAGGCTTTGAAGATCG
TTTCGGAATTTATCCCCGATATCACAACCCGATTGGATTCGAATGTGGAT
GGGACGAATTCACAATTACGTGcattctttcaaaagatttttatgactcg
accaatcaaattcccTGTCATCTACTTTACAGGTAATCCATCTCTTTTTG
GCCCAACCTCTCGCTCggttttaaagggacataaaagtagtaaacattgc
gcgaaccacgtgtcattaaagagaacaattaaaatcacatgtccaaaaca
aacttgtgaaacaatagaaacaatcaaaaatcagccatatttgttttgat
tttgacacgtgacatttgttttgattttgtatcccacttcatacggtttg
tttacaaagttcgatagtacttttatgtccctttaaaggaCATAAtttag
aacacccccttctcacagacccgctggtcccccatcccactggaaaaata
gactaaaatatCGTCTTCAGTGGAATAAGTTATACTTTAATTGTTGtacc
cgctgaaaataatcaaataagcaaatcctcattGAAAATTATTAATTCCA
TCCTCAgtgaattttctggctagaaaacaagggaatttaaatccccagcc
ataaaaacatgggaatatcaaacTCTATCGAGTGTTAAAGCGTTATTTTT
ACTCCCCCTGGCTAAAAAGATCCCACTGGGTCAGTCAGAAGGGGTTGTTA
TCTGCTCCAAGTAATCTCCCATGGACACAAACCCTGGTTGAAACAATGGT
TGAAAAAATCCTAAGTCTGTGAGAAAGTAGCCTATACTAGACATCACGCG
CGTTTTATTTTACGCAATTAACGTCTATTCCACTTTGCGACTTTTTCGAA
TGTTTTGAGCCCGGGTTTTCGGGCTCTAAACATTCGAATTTTTGACGTCA
CTTTTAATTTTCGAAGCTCCTGTTGTAGCAAAAGAATCGAATTTGCGTCA
AAACACTTGAAAGGCTTTCTATTTTTCGAAAATCGTCAAAGTGAAACTCA
CTAAGAAACGAGATGAAAAATCCCGGGTTTTAGTGAGGTGCACGCTAGTG
AGAAAGGGGTATAACATGAAATTTAAATCTTTTCATAATTCCTCTAATCA
AATGATATTTTATCTTTATAGAAAACAAAGAACCACCCATTGAAATTCGA
GCGTTAGCTTTGAAATATTCAAGTCTTTTTCAATTTGGAGTGATTTCAAG
ACCAACCAAAAACGCTTTAAACGCCTACGCAATAAAATCACTACCACACT
TCAGTGGATACATTATAGAGAATGTGACGTCACAGCCTCGCTTGAAGAAT
TACATTTACCAAGGCCAGTTAAACGGTCCATCTGAGTATCCTTTCCTTGT
ACACTTCTTGTATTTGCTACATAAAAATCATTTCAAGGAATTACCAAAAG
TAAGGAAGCCGAAAAGTAGTGATGACGTCAGAAATGCGGGAAAAGATGAT
GAGATTGAACTTGATTTGGAGGAGACGTTTAGTGAAGATTTTGAATTATT
TCATGAACTTTACAAAATGTTCCCCATGGAGTATGGGACCAAGGATGAAT
TATAGACCAACATGTTTGTAGATCACAGAAAAAAAGCGTTCAAGATTAAT
TAGATTTCTATACTCAGTGTATCTTTCATTGGAGCTTTTGTAAAATCAGG
ATTATTTTGGCTAATTCCTTTTCTTTTCTTTGTTGTTTTAATTTTTCCTA
TGATTATTTTGAAAAAGATTAAAATGAATGATCAATATATTGACAAATGC
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062190-exon-scaffold_362-1491911889:520975..521016 | TCONS_00062190-exon-scaffold_362-1491911889:520975..521016 | Clytia hemisphaerica | exon |
| TCONS_00062190-exon-scaffold_362-1510915933:520975..521016 | TCONS_00062190-exon-scaffold_362-1510915933:520975..521016 | Clytia hemisphaerica | exon |
| TCONS_00062190-exon-scaffold_362-1575043694:520975..521016 | TCONS_00062190-exon-scaffold_362-1575043694:520975..521016 | Clytia hemisphaerica | exon |
| TCONS_00062190-exon-scaffold_362-1491911889:521753..521998 | TCONS_00062190-exon-scaffold_362-1491911889:521753..521998 | Clytia hemisphaerica | exon |
| TCONS_00062190-exon-scaffold_362-1510915933:521753..521998 | TCONS_00062190-exon-scaffold_362-1510915933:521753..521998 | Clytia hemisphaerica | exon |
| TCONS_00062190-exon-scaffold_362-1575043694:521753..521998 | TCONS_00062190-exon-scaffold_362-1575043694:521753..521998 | Clytia hemisphaerica | exon |
| TCONS_00062190-exon-scaffold_362-1491911889:523316..523556 | TCONS_00062190-exon-scaffold_362-1491911889:523316..523556 | Clytia hemisphaerica | exon |
| TCONS_00062190-exon-scaffold_362-1510915933:523316..523556 | TCONS_00062190-exon-scaffold_362-1510915933:523316..523556 | Clytia hemisphaerica | exon |
| TCONS_00062190-exon-scaffold_362-1575043694:523316..523556 | TCONS_00062190-exon-scaffold_362-1575043694:523316..523556 | Clytia hemisphaerica | exon |
| TCONS_00062190-exon-scaffold_362-1491911889:524546..525175 | TCONS_00062190-exon-scaffold_362-1491911889:524546..525175 | Clytia hemisphaerica | exon |
| TCONS_00062190-exon-scaffold_362-1510915933:524546..525175 | TCONS_00062190-exon-scaffold_362-1510915933:524546..525175 | Clytia hemisphaerica | exon |
| TCONS_00062190-exon-scaffold_362-1575043694:524546..525175 | TCONS_00062190-exon-scaffold_362-1575043694:524546..525175 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:520975..525175 + |
Blast
The following BLAST results are available for this feature:
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