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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062150 ID=TCONS_00062150|Name=TCONS_00062150|organism=Clytia hemisphaerica|type=transcript|length=4517bpRun BLAST on NCBI protein sequence of TCONS_00062150-protein >TCONS_00062150-protein ID=TCONS_00062150-protein|Name=TCONS_00062150-protein|organism=Clytia hemisphaerica|type=polypeptide|length=679bp EENYKGKYTYNHTLIKTNINKTCAYQSNAQIGRKCKGSLKDGPSWQEVVTRun BLAST on NCBI transcript from alignment at scaffold_362:30684..73954+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062150 ID=TCONS_00062150|Name=TCONS_00062150|organism=Clytia hemisphaerica|type=transcript|length=43271bp|location=Sequence derived from alignment at scaffold_362:30684..73954+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_362:30684..73954+ >TCONS_00062150 ID=TCONS_00062150|Name=TCONS_00062150|organism=Clytia hemisphaerica|type=CDS|length=18360bp|location=Sequence derived from alignment at scaffold_362:30684..73954+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062150 vs. Swiss-Prot (Human)
Match: AGRG7 (Adhesion G-protein coupled receptor G7 OS=Homo sapiens GN=ADGRG7 PE=1 SV=2) HSP 1 Score: 157.147 bits (396), Expect = 6.790e-39 Identity = 133/453 (29.36%), Postives = 212/453 (46.80%), Query Frame = 1
Query: 784 LFNKPTLFKSKQYQAGRVGYVGSPVLAVTISNNETIAQNQSIELSFVVPPNFLKNMTNEKVEEL----CCFWNFTTDTWSNYGCHKVDRPSNRDDVITCRCNHLTNFAVLLDVEQGVVYNPLALQYVSIIGCWISVTGLVITIVCHLVFRKVMRKLPPKILINLCVSILALLLVFLFGVDQS-----TSSSRIT---------------------CQIMAALLHYFTLTTFCWTLVEAYNLYKNFVKIFNMGGSNKKFMYFAMSFAWGFPLLIVGISSSVA-------PQ---NLGSKDFCV--------VIGNTXXXXXXXXXXXXXXXNYFAFGFILKSITSRKVVANSNK---TQQKDELQRQLRSAFTIATLLGMTWIFAILAI---GDVKETFQWLFSISTSLQGFCIFVLYTVRNPEIQNEVYQCLGLKRNNKKHSTASSAELAPMR 1980
++ LF+SK + A +++ NE Q+QS + V P + N+K +L C +WN + W YGC K D+ + D + CRCNH TNFAVL+ ++ Y P +L +S +GC +SVTGL +T++ +V RKV + +L+NLC+S+L L+F+FG++ S TS I C +AALLHYF L TF W + A LY ++ I M + F+ F WG P ++V I+ V PQ + + C VI + L + P+ +IL+ N F I S KV+ +N+ + +K +++ S ++A + G+TWI A L + ++ F ++F + + QG IF+LYTVR Q+E + L L + + + S +R
Sbjct: 325 VYQNDKLFQSKTFTAK--SDFSQKIISSKTDENE---QDQSASVDMVFSPKY-----NQKEFQLYSYACVYWNLSAKDWDTYGCQK-DKGT--DGFLRCRCNHTTNFAVLMTFKKDYQY-PKSLDILSNVGCALSVTGLALTVIFQIVTRKVRKTSVTWVLVNLCISMLIFNLLFVFGIENSNKNLQTSDGDINNIDFDNNDIPRTDTINIPNPMCTAIAALLHYFLLVTFTWNALSAAQLY--YLLIRTMKPLPRHFILFISLIGWGVPAIVVAITVGVIYSQNGNNPQWELDYRQEKICWLAIPEPNGVIKSPLLWSFIVPVTIILISNVVMFITI-----SIKVLWKNNQNLTSTKKVSSMKKIVSTLSVAVVFGITWILAYLMLVNDDSIRIVFSYIFCLFNTTQGLQIFILYTVRTKVFQSEASKVLMLLSSIGRRKSLPSVTRPRLR 756 The following BLAST results are available for this feature:
BLAST of TCONS_00062150 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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