TCONS_00062149 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062149
Unique NameTCONS_00062149
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length419

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062149 ID=TCONS_00062149|Name=TCONS_00062149|organism=Clytia hemisphaerica|type=transcript|length=419bp
GTTCCAGTTTTTCAAACTCCGCCCATCGTCGTATCCACATCAGATCAAGT
GGGAGGTCTTCAAAAACTCCACAGTTGCTCAATCATAACCAAGATACCTA
CATCCAGAGCTCACTTTTACTATATCAAGAACGATTTCGATTCGTACTCC
GTTGATAACGAGCGACGTCTGGATCAACCGTTTCCCGATTTGAATTTTAC
TAATCCGACGTATTCCGATCAGGGTTATTATCAATGTATGTTGGTCTATC
ACACTGATGAGAATGGAGTGGAACAAAAAGTCTTTTCCTCGGTTGTTGAT
GTTCAGTTTCAAGATGTGTCAACAACAAAAGTGGAAGTTCGTTTCGTAGA
TTTCCAATACAACCCTGCTTATGGTGATCGACAATCAAATGAGTTCAAAg
ccattgaaaaagaaattct
Run BLAST on NCBI

protein sequence of TCONS_00062149-protein

>TCONS_00062149-protein ID=TCONS_00062149-protein|Name=TCONS_00062149-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
VPVFQTPPIVVSTSDQVGGLQKLHSCSIITKIPTSRAHFYYIKNDFDSYS
VDNERRLDQPFPDLNFTNPTYSDQGYYQCMLVYHTDENGVEQKVFSSVVD
VQFQDVSTTKVEVRFVDFQYNPAYGDRQSNEFKAIEKEI
Run BLAST on NCBI

transcript from alignment at scaffold_362:24130..25061+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062149 ID=TCONS_00062149|Name=TCONS_00062149|organism=Clytia hemisphaerica|type=transcript|length=932bp|location=Sequence derived from alignment at scaffold_362:24130..25061+ (Clytia hemisphaerica)
GTTCCAGTTTTTCAAACTCCGCCCATCGTCGTATCCACATCAGATCAAGT
GGGAGGTCTTCAAAAACTCCACAGTTGCTCAATCATAACCAAGATACCTA
CATCCAGAGCTCACTTTTACTATATCAAGAACGATTTCGATTCGTACTCC
GTTGATAACGAGCGACGTCTGGATCAACCGTTTCCCGATTTGAATTTTAC
TAATCCGACGTATTCCGATCAGGGTTATTATCAATGTATGTTGGTCTATC
ACACTGATGAGAATGGAGTGGAACAAAAAGTCTTTTCCTCGGTTGTTGAT
GTTCAGTTTCAAGGTTGGTATCCTTTTTGGTGACCATACTACGTTTATGT
TTCATTTGTCTCGTGCCAAGATGGCAAATTTTTTGTTACAAGCGAGGTTA
GGCATgaatatattcatgatatgcccggaccattttcaaatatttcgccA
TTTCTTACATCATTTTATCAAATGAATAATATGGTATGCTCGCCGTTTTG
GTAACCATACTTTGATTTCAGTTATCCATTATTGCCAATGATATATGATA
TATGCAGTCTTTTTACCAATTTACGATTTCTACAACATGAGATTGCGGAA
TATCGTAGAATTTGAAAGGGATAGCTAATTAAATTCAGCCACCGTGGATT
ATGCTAAATCAATTACCGTGTGTCCCATAAAAATAGTAAACCGACCGAGC
CGTGTCGTAGAGAGAGTCGGGAAAATATCCAGAAAGCAAGCTCCtgggaa
atttcaaattaattatttcagaaaattgaaatttagcaaTATTTCTAACg
aaattttctctcttttataATGATAGATGTGTCAACAACAAAAGTGGAAG
TTCGTTTCGTAGATTTCCAATACAACCCTGCTTATGGTGATCGACAATCA
AATGAGTTCAAAgccattgaaaaagaaattct

Coding sequence (CDS) from alignment at scaffold_362:24130..25061+

>TCONS_00062149 ID=TCONS_00062149|Name=TCONS_00062149|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at scaffold_362:24130..25061+ (Clytia hemisphaerica)
GTTCCAGTTTTTCAAACTCCGCCCATCGTCGTATCCACATCAGATCAAGT
GGGAGGTCTTCAAAAACTCCACAGTTGCTCAATCATAACCAAGATACCTA
CATCCAGAGCTCACTTTTACTATATCAAGAACGATTTCGATTCGTACTCC
GTTGATAACGAGCGACGTCTGGATCAACCGTTTCCCGATTTGAATTTTAC
TAATCCGACGTATTCCGATCAGGGTTATTATCAATGTATGTTGGTCTATC
ACACTGATGAGAATGGAGTGGAACAAAAAGTCTTTTCCTCGGTTGTTGAT
GTTCAGTTTCAAGATGTGTCAACAACAAAAGTGGAAGTTCGTTTCGTAGA
TTTCCAATACAACCCTGCTTATGGTGATCGACAATCAAATGAGTTCAAAg
ccattgaaaaagaaattGTTCCAGTTTTTCAAACTCCGCCCATCGTCGTA
TCCACATCAGATCAAGTGGGAGGTCTTCAAAAACTCCACAGTTGCTCAAT
CATAACCAAGATACCTACATCCAGAGCTCACTTTTACTATATCAAGAACG
ATTTCGATTCGTACTCCGTTGATAACGAGCGACGTCTGGATCAACCGTTT
CCCGATTTGAATTTTACTAATCCGACGTATTCCGATCAGGGTTATTATCA
ATGTATGTTGGTCTATCACACTGATGAGAATGGAGTGGAACAAAAAGTCT
TTTCCTCGGTTGTTGATGTTCAGTTTCAAGATGTGTCAACAACAAAAGTG
GAAGTTCGTTTCGTAGATTTCCAATACAACCCTGCTTATGGTGATCGACA
ATCAAATGAGTTCAAAgccattgaaaaagaaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038972XLOC_038972Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062149-proteinTCONS_00062149-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062149-exon-scaffold_362-1491911889:24130..24442TCONS_00062149-exon-scaffold_362-1491911889:24130..24442Clytia hemisphaericaexon
TCONS_00062149-exon-scaffold_362-1510915933:24130..24442TCONS_00062149-exon-scaffold_362-1510915933:24130..24442Clytia hemisphaericaexon
TCONS_00062149-exon-scaffold_362-1575043694:24130..24442TCONS_00062149-exon-scaffold_362-1575043694:24130..24442Clytia hemisphaericaexon
TCONS_00062149-exon-scaffold_362-1491911889:24956..25061TCONS_00062149-exon-scaffold_362-1491911889:24956..25061Clytia hemisphaericaexon
TCONS_00062149-exon-scaffold_362-1510915933:24956..25061TCONS_00062149-exon-scaffold_362-1510915933:24956..25061Clytia hemisphaericaexon
TCONS_00062149-exon-scaffold_362-1575043694:24956..25061TCONS_00062149-exon-scaffold_362-1575043694:24956..25061Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:24130..25061 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.337883	0.164745	0	0	1.13914	0.720129	0.217201	0.203341	0.427092	0.529022	0.855803	0.337543	0.786504	0.350054	1.15117	0.720638	1.01459	1.03992	3.2326	2.44305	0.980054	0.956072	0.193705	0.704424	1.08831	1.13317	0.694958	0	0.375024	0.38209
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR000082SEA_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062149 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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