TCONS_00062147 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062147
Unique NameTCONS_00062147
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length511

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062147 ID=TCONS_00062147|Name=TCONS_00062147|organism=Clytia hemisphaerica|type=transcript|length=511bp
AAGTCTCCAGTACTTGTACTACGTCTTCAATCCTCAGCAGTCGCAATGCC
ACAACTGTTTTGACAGAAATGATGACAGAATCGAATTCTAATGTTTCTGA
AACAGTCACAAACCGTATTTATCATAGTGAATCTGTATCACATTCGACAG
AGCAACTTATTCGACCAACCAGCACTGGCTATCAAATGTCATCCATTTTA
TCCAGTATTTCAACAGAGGAGCCAAATCTAGATTGTGACTACAGACTTGG
AATCTACCGATCACCAGACAGCTTTGTAACAATATGGAAAAATCAATCAA
CCAACCAGCTTCTCGTCACCAAAGGGAATCAAACAGGCTTGAATGGAACT
TTTACCGGCCGATGTTCGAAATTCAGTTTCATATCAGATGGTGTTTATAC
CTTTGGATTGTTTGAAGATAAATGTTCATTGAAACTGAAATCAGATAATG
GAAACATGACCATTTATCAGAAGTTGGTGTGTTATAAAGATTCAACCGAG
ATGAACTGCAC
Run BLAST on NCBI

protein sequence of TCONS_00062147-protein

>TCONS_00062147-protein ID=TCONS_00062147-protein|Name=TCONS_00062147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
VSSTCTTSSILSSRNATTVLTEMMTESNSNVSETVTNRIYHSESVSHSTE
QLIRPTSTGYQMSSILSSISTEEPNLDCDYRLGIYRSPDSFVTIWKNQST
NQLLVTKGNQTGLNGTFTGRCSKFSFISDGVYTFGLFEDKCSLKLKSDNG
NMTIYQKLVCYKDSTEMNC
Run BLAST on NCBI

transcript from alignment at scaffold_362:17428..21015+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062147 ID=TCONS_00062147|Name=TCONS_00062147|organism=Clytia hemisphaerica|type=transcript|length=3588bp|location=Sequence derived from alignment at scaffold_362:17428..21015+ (Clytia hemisphaerica)
AAGTCTCCAGTACTTGTACTACGTCTTCAATCCTCAGCAGTCGCAATGCC ACAACTGTTTTGACAGAAATGATGACAGAATCGAATTCTAATGTTTCTGA AACAGTCACAAACCGTATTTATCATAGTGAATCTGTATCACATTCGACAG AGCAACTTATTCGACCAACCAGCACTGGCTATCAAATGTCATCCATTTTA TCCAGTATTTCAACAGAGGAGCCAAATCTAGGTTAGGAAAACTATCATTT CTAAATTTAAACGATGGAAGTCTTGTCtccacgtttgttcctcttagatg aagcTCATCTTAGAGTATATAATAGTCTAAAGATCCCTCAAATTTAACTT TTCTGGTATTTTTTAACCATGCCTATTCATAGGTTGAATAGCAAGCAGAC TTGTACCATCTTCATTCAATGTAACCTTTGGGCCACACTCAAGCTCAAAA TTATGTTTTAATCAGGAGTTTTATTAGGCCTGGTAGAAGAGGGTCACCAT TCGAAATCAAAGGACGAAATTTTATGGAACTTTATTACCATCTTCTTCAC TATTTCAGATTGTGCCTACAAACTTCAACTACTATCGTAGTAACTTAATG TACTTATGCGGCCACACCTAACTCAAAATTATGCTCTAACCAGTGCTATG AAATATGAGTTTCATTACACCTGGTAGACGGGTCACTATTTGAAATCGGA GAGCGAAATCTACGAATCTTTCGAACTACGGTTACAATTTTCGTATGATA ATTCAAACTTCTTCACTATTTCAGATTGTGACTACAGACTTGGAATCTAC CGATCACCAGACAGCTTTGTAACAATATGGAAAAATCAATCAACCAACCA GCTTCTCGTCACCAAAGGGAATCAAACAGGCTTGAATGGAACTTTTACCG GCCGATGTTCGAAATTCAGTTTCATATCAGATGGTGTTTATACCTTTGGA TTGTTTGAAGATAAATGTTCATTGAAACTGAAATCAGATAATGGAAACAT GACCATTTATCAGAAGTTGGTGTGTTATAAAGGTAAAAAGAGACTTTATG AAGCCTTTGCAAGCTTGAATTTCACTGTTTGTACATTTTGAGGCGCAGTT GTGTAGTGGTCATCGTTCTTGATTTCCGTGCTGGAGGTCAGGGTTTgatt cccactcggtgctgcgattcacttggcaagtgaatgtaccttggcccggg tcaacccataccatgtgaggggaatagggtaccatcactctgatacaaga gtatggggagaTATGCTTGACATGGTATACGAGTGTGGTGTGGTGATGGT ACTCATATGTTCGGTACCTGCGAGAATGCAAGGTTCTCCCGTACCGTGCg agtatcatcatcgatacagcacggatctgatgtgtcgcgagcacagGTTA GGGCCCGGTTcgatgatatcggagggtcagcttctcttctcttctctata cattttgttttataaacgACTCAAATTTTCGGCTCTGGTCTGGggttttc tgagaaatttgttTTGAGCGCACCTAGTATTATACGATATGCTTTTTGAG TCAAGGGGTACcgtttgccatggttagataATCCAAAAAGCTTTATGAGA TAGTGGCAAAAGTTGGCTAATTTGAGCTTTCGAGTCTTAGTAACCTTCCT TAAGTGGATtgaatttggcgattggccaaaatgaaatttttaatttggca aatgatcaattttctataaattggtggggatttaatttggcaaatgatca attttctataaattggtggggatttaatttggcggatgggaAAGTTTAAG GCTTTTATAAATTAAAGATGACGtggtattttactaaaaaaatGCATATT ATGTAAAGAACTTCTATCCTAAAAGATTCTGCTAGATTATGCGGGGATTT AATTAGAcgtattaaattttgcgaatgatcgattttttaaattttggagg gGGTAATAGACCTTtacataaattacgtcacaaacatcacttgcctcgtt ttgaaattattgccacgGTGATTAACCCCCTTGACTCCAAGCGGATTTTA TTTAAACtactttcttttcataaaaaatcatttaatgccTTAAGGGACAT AATCATCATAGtaattgtttgaaaacgaggcaagtgatgttcgtggcGTA Atacggtcgtggcttcttcgtaaagacgaaagacagatctggacttattt cgtactttcaagtctcttgttcgtagtttttctgactttccgGTTCTATG Tgatttattttctatgttttctaacttactgaatgacttaccgacagatc gccaccggtgggattcgaacccactaaatgcaaagttccgatgttttgaa acccaatgccttatccactgcgccacggattcatacCAAGAAAgtgtttc tgacggctatttatattgtacaaactgcagaccagactatatttagagaa aatcacaaaaaagtgcttgtttcgagctccaaccctaaccctaactgata ataaccaaattcctagccaatctgatacgtaaccacacccaaaccacacc caNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNccaggtcgcctgcaggtcctgacac tattcccgcatgccggatccgaaaaatagatacatgtctttcgcttttac gaagaagccttcaccgcgtaatacacgggtttcgaattaaatttttgctt agctttagctttgatcccatgtaaatttgcacgaacaatatcaagtaaac agaacgaaaattggccgtgtatcaagcaattttagctcatttttccattt tgacagactttatgggtcattatgaaaacaaaaaacattNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNaaacatcttttgaatgaacacctggc tttcaaaagagaagaaaggaaatctatcaaccttttataaggcatttccc cttatcgctccttttatttacttgatattttctctcgcgccagatttaat tcgaaacccgtgtatttcTGAAAAGGTCTTTTTGgcgatttttcccaaaa tttactaaatttgccaaatttttaattcccaccaaaattaatccaTTTAT TGTTgattatgaaaatgtgtatCATAATTTATAACGATTGTGATTGGCTT AAAAACAAACGAGAAGGATAATAAGAATTTCTTTACATAATGTAATATGA AAATTTGTGTCTTTATAGTTTATCGTGCAGATAATTAATTAAGCTATGGT GCACTGCTAGGTAGTCTATTAACTAAAATTTGCCTTTAATCTGtttcttt ttacaattttattaaGATTCAACCGAGATGAACTGCAC

Coding sequence (CDS) from alignment at scaffold_362:17428..21015+

>TCONS_00062147 ID=TCONS_00062147|Name=TCONS_00062147|organism=Clytia hemisphaerica|type=CDS|length=1521bp|location=Sequence derived from alignment at scaffold_362:17428..21015+ (Clytia hemisphaerica)
GTCTCCAGTACTTGTACTACGTCTTCAATCCTCAGCAGTCGCAATGCCAC
AACTGTTTTGACAGAAATGATGACAGAATCGAATTCTAATGTTTCTGAAA
CAGTCACAAACCGTATTTATCATAGTGAATCTGTATCACATTCGACAGAG
CAACTTATTCGACCAACCAGCACTGGCTATCAAATGTCATCCATTTTATC
CAGTATTTCAACAGAGGAGCCAAATCTAGATTGTGACTACAGACTTGGAA
TCTACCGATCACCAGACAGCTTTGTAACAATATGGAAAAATCAATCAACC
AACCAGCTTCTCGTCACCAAAGGGAATCAAACAGGCTTGAATGGAACTTT
TACCGGCCGATGTTCGAAATTCAGTTTCATATCAGATGGTGTTTATACCT
TTGGATTGTTTGAAGATAAATGTTCATTGAAACTGAAATCAGATAATGGA
AACATGACCATTTATCAGAAGTTGGTGTGTTATAAAGATTCAACCGAGAT
GAACTGCGTCTCCAGTACTTGTACTACGTCTTCAATCCTCAGCAGTCGCA
ATGCCACAACTGTTTTGACAGAAATGATGACAGAATCGAATTCTAATGTT
TCTGAAACAGTCACAAACCGTATTTATCATAGTGAATCTGTATCACATTC
GACAGAGCAACTTATTCGACCAACCAGCACTGGCTATCAAATGTCATCCA
TTTTATCCAGTATTTCAACAGAGGAGCCAAATCTAGATTGTGACTACAGA
CTTGGAATCTACCGATCACCAGACAGCTTTGTAACAATATGGAAAAATCA
ATCAACCAACCAGCTTCTCGTCACCAAAGGGAATCAAACAGGCTTGAATG
GAACTTTTACCGGCCGATGTTCGAAATTCAGTTTCATATCAGATGGTGTT
TATACCTTTGGATTGTTTGAAGATAAATGTTCATTGAAACTGAAATCAGA
TAATGGAAACATGACCATTTATCAGAAGTTGGTGTGTTATAAAGATTCAA
CCGAGATGAACTGCGTCTCCAGTACTTGTACTACGTCTTCAATCCTCAGC
AGTCGCAATGCCACAACTGTTTTGACAGAAATGATGACAGAATCGAATTC
TAATGTTTCTGAAACAGTCACAAACCGTATTTATCATAGTGAATCTGTAT
CACATTCGACAGAGCAACTTATTCGACCAACCAGCACTGGCTATCAAATG
TCATCCATTTTATCCAGTATTTCAACAGAGGAGCCAAATCTAGATTGTGA
CTACAGACTTGGAATCTACCGATCACCAGACAGCTTTGTAACAATATGGA
AAAATCAATCAACCAACCAGCTTCTCGTCACCAAAGGGAATCAAACAGGC
TTGAATGGAACTTTTACCGGCCGATGTTCGAAATTCAGTTTCATATCAGA
TGGTGTTTATACCTTTGGATTGTTTGAAGATAAATGTTCATTGAAACTGA
AATCAGATAATGGAAACATGACCATTTATCAGAAGTTGGTGTGTTATAAA
GATTCAACCGAGATGAACTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038970XLOC_038970Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062147-proteinTCONS_00062147-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062147-exon-scaffold_362-1491911889:17428..17658TCONS_00062147-exon-scaffold_362-1491911889:17428..17658Clytia hemisphaericaexon
TCONS_00062147-exon-scaffold_362-1510915933:17428..17658TCONS_00062147-exon-scaffold_362-1510915933:17428..17658Clytia hemisphaericaexon
TCONS_00062147-exon-scaffold_362-1575043694:17428..17658TCONS_00062147-exon-scaffold_362-1575043694:17428..17658Clytia hemisphaericaexon
TCONS_00062147-exon-scaffold_362-1491911889:18202..18459TCONS_00062147-exon-scaffold_362-1491911889:18202..18459Clytia hemisphaericaexon
TCONS_00062147-exon-scaffold_362-1510915933:18202..18459TCONS_00062147-exon-scaffold_362-1510915933:18202..18459Clytia hemisphaericaexon
TCONS_00062147-exon-scaffold_362-1575043694:18202..18459TCONS_00062147-exon-scaffold_362-1575043694:18202..18459Clytia hemisphaericaexon
TCONS_00062147-exon-scaffold_362-1491911889:20994..21015TCONS_00062147-exon-scaffold_362-1491911889:20994..21015Clytia hemisphaericaexon
TCONS_00062147-exon-scaffold_362-1510915933:20994..21015TCONS_00062147-exon-scaffold_362-1510915933:20994..21015Clytia hemisphaericaexon
TCONS_00062147-exon-scaffold_362-1575043694:20994..21015TCONS_00062147-exon-scaffold_362-1575043694:20994..21015Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:17428..21015 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.117476 0.114558 0.133012 0.130132 0.316846 0 0 0 0.0989947 0 0.357057 0.156477 0.234389 0.649107 0.0667067 0.0715865 0.352755 0.0903906 1.62343 1.1761 0.45433 0.332409 0 0.489832 1.26129 1.6885 0 0 0.130389 0.132846
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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