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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062147 ID=TCONS_00062147|Name=TCONS_00062147|organism=Clytia hemisphaerica|type=transcript|length=511bp
AAGTCTCCAGTACTTGTACTACGTCTTCAATCCTCAGCAGTCGCAATGCC
ACAACTGTTTTGACAGAAATGATGACAGAATCGAATTCTAATGTTTCTGA
AACAGTCACAAACCGTATTTATCATAGTGAATCTGTATCACATTCGACAG
AGCAACTTATTCGACCAACCAGCACTGGCTATCAAATGTCATCCATTTTA
TCCAGTATTTCAACAGAGGAGCCAAATCTAGATTGTGACTACAGACTTGG
AATCTACCGATCACCAGACAGCTTTGTAACAATATGGAAAAATCAATCAA
CCAACCAGCTTCTCGTCACCAAAGGGAATCAAACAGGCTTGAATGGAACT
TTTACCGGCCGATGTTCGAAATTCAGTTTCATATCAGATGGTGTTTATAC
CTTTGGATTGTTTGAAGATAAATGTTCATTGAAACTGAAATCAGATAATG
GAAACATGACCATTTATCAGAAGTTGGTGTGTTATAAAGATTCAACCGAG
ATGAACTGCAC Run BLAST on NCBI protein sequence of TCONS_00062147-protein >TCONS_00062147-protein ID=TCONS_00062147-protein|Name=TCONS_00062147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
VSSTCTTSSILSSRNATTVLTEMMTESNSNVSETVTNRIYHSESVSHSTE
QLIRPTSTGYQMSSILSSISTEEPNLDCDYRLGIYRSPDSFVTIWKNQST
NQLLVTKGNQTGLNGTFTGRCSKFSFISDGVYTFGLFEDKCSLKLKSDNG
NMTIYQKLVCYKDSTEMNC Run BLAST on NCBI transcript from alignment at scaffold_362:17428..21015+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062147 ID=TCONS_00062147|Name=TCONS_00062147|organism=Clytia hemisphaerica|type=transcript|length=3588bp|location=Sequence derived from alignment at scaffold_362:17428..21015+ (Clytia hemisphaerica)
AAGTCTCCAGTACTTGTACTACGTCTTCAATCCTCAGCAGTCGCAATGCC
ACAACTGTTTTGACAGAAATGATGACAGAATCGAATTCTAATGTTTCTGA
AACAGTCACAAACCGTATTTATCATAGTGAATCTGTATCACATTCGACAG
AGCAACTTATTCGACCAACCAGCACTGGCTATCAAATGTCATCCATTTTA
TCCAGTATTTCAACAGAGGAGCCAAATCTAGGTTAGGAAAACTATCATTT
CTAAATTTAAACGATGGAAGTCTTGTCtccacgtttgttcctcttagatg
aagcTCATCTTAGAGTATATAATAGTCTAAAGATCCCTCAAATTTAACTT
TTCTGGTATTTTTTAACCATGCCTATTCATAGGTTGAATAGCAAGCAGAC
TTGTACCATCTTCATTCAATGTAACCTTTGGGCCACACTCAAGCTCAAAA
TTATGTTTTAATCAGGAGTTTTATTAGGCCTGGTAGAAGAGGGTCACCAT
TCGAAATCAAAGGACGAAATTTTATGGAACTTTATTACCATCTTCTTCAC
TATTTCAGATTGTGCCTACAAACTTCAACTACTATCGTAGTAACTTAATG
TACTTATGCGGCCACACCTAACTCAAAATTATGCTCTAACCAGTGCTATG
AAATATGAGTTTCATTACACCTGGTAGACGGGTCACTATTTGAAATCGGA
GAGCGAAATCTACGAATCTTTCGAACTACGGTTACAATTTTCGTATGATA
ATTCAAACTTCTTCACTATTTCAGATTGTGACTACAGACTTGGAATCTAC
CGATCACCAGACAGCTTTGTAACAATATGGAAAAATCAATCAACCAACCA
GCTTCTCGTCACCAAAGGGAATCAAACAGGCTTGAATGGAACTTTTACCG
GCCGATGTTCGAAATTCAGTTTCATATCAGATGGTGTTTATACCTTTGGA
TTGTTTGAAGATAAATGTTCATTGAAACTGAAATCAGATAATGGAAACAT
GACCATTTATCAGAAGTTGGTGTGTTATAAAGGTAAAAAGAGACTTTATG
AAGCCTTTGCAAGCTTGAATTTCACTGTTTGTACATTTTGAGGCGCAGTT
GTGTAGTGGTCATCGTTCTTGATTTCCGTGCTGGAGGTCAGGGTTTgatt
cccactcggtgctgcgattcacttggcaagtgaatgtaccttggcccggg
tcaacccataccatgtgaggggaatagggtaccatcactctgatacaaga
gtatggggagaTATGCTTGACATGGTATACGAGTGTGGTGTGGTGATGGT
ACTCATATGTTCGGTACCTGCGAGAATGCAAGGTTCTCCCGTACCGTGCg
agtatcatcatcgatacagcacggatctgatgtgtcgcgagcacagGTTA
GGGCCCGGTTcgatgatatcggagggtcagcttctcttctcttctctata
cattttgttttataaacgACTCAAATTTTCGGCTCTGGTCTGGggttttc
tgagaaatttgttTTGAGCGCACCTAGTATTATACGATATGCTTTTTGAG
TCAAGGGGTACcgtttgccatggttagataATCCAAAAAGCTTTATGAGA
TAGTGGCAAAAGTTGGCTAATTTGAGCTTTCGAGTCTTAGTAACCTTCCT
TAAGTGGATtgaatttggcgattggccaaaatgaaatttttaatttggca
aatgatcaattttctataaattggtggggatttaatttggcaaatgatca
attttctataaattggtggggatttaatttggcggatgggaAAGTTTAAG
GCTTTTATAAATTAAAGATGACGtggtattttactaaaaaaatGCATATT
ATGTAAAGAACTTCTATCCTAAAAGATTCTGCTAGATTATGCGGGGATTT
AATTAGAcgtattaaattttgcgaatgatcgattttttaaattttggagg
gGGTAATAGACCTTtacataaattacgtcacaaacatcacttgcctcgtt
ttgaaattattgccacgGTGATTAACCCCCTTGACTCCAAGCGGATTTTA
TTTAAACtactttcttttcataaaaaatcatttaatgccTTAAGGGACAT
AATCATCATAGtaattgtttgaaaacgaggcaagtgatgttcgtggcGTA
Atacggtcgtggcttcttcgtaaagacgaaagacagatctggacttattt
cgtactttcaagtctcttgttcgtagtttttctgactttccgGTTCTATG
Tgatttattttctatgttttctaacttactgaatgacttaccgacagatc
gccaccggtgggattcgaacccactaaatgcaaagttccgatgttttgaa
acccaatgccttatccactgcgccacggattcatacCAAGAAAgtgtttc
tgacggctatttatattgtacaaactgcagaccagactatatttagagaa
aatcacaaaaaagtgcttgtttcgagctccaaccctaaccctaactgata
ataaccaaattcctagccaatctgatacgtaaccacacccaaaccacacc
caNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNccaggtcgcctgcaggtcctgacac
tattcccgcatgccggatccgaaaaatagatacatgtctttcgcttttac
gaagaagccttcaccgcgtaatacacgggtttcgaattaaatttttgctt
agctttagctttgatcccatgtaaatttgcacgaacaatatcaagtaaac
agaacgaaaattggccgtgtatcaagcaattttagctcatttttccattt
tgacagactttatgggtcattatgaaaacaaaaaacattNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNaaacatcttttgaatgaacacctggc
tttcaaaagagaagaaaggaaatctatcaaccttttataaggcatttccc
cttatcgctccttttatttacttgatattttctctcgcgccagatttaat
tcgaaacccgtgtatttcTGAAAAGGTCTTTTTGgcgatttttcccaaaa
tttactaaatttgccaaatttttaattcccaccaaaattaatccaTTTAT
TGTTgattatgaaaatgtgtatCATAATTTATAACGATTGTGATTGGCTT
AAAAACAAACGAGAAGGATAATAAGAATTTCTTTACATAATGTAATATGA
AAATTTGTGTCTTTATAGTTTATCGTGCAGATAATTAATTAAGCTATGGT
GCACTGCTAGGTAGTCTATTAACTAAAATTTGCCTTTAATCTGtttcttt
ttacaattttattaaGATTCAACCGAGATGAACTGCAC Coding sequence (CDS) from alignment at scaffold_362:17428..21015+ >TCONS_00062147 ID=TCONS_00062147|Name=TCONS_00062147|organism=Clytia hemisphaerica|type=CDS|length=1521bp|location=Sequence derived from alignment at scaffold_362:17428..21015+ (Clytia hemisphaerica)
GTCTCCAGTACTTGTACTACGTCTTCAATCCTCAGCAGTCGCAATGCCAC
AACTGTTTTGACAGAAATGATGACAGAATCGAATTCTAATGTTTCTGAAA
CAGTCACAAACCGTATTTATCATAGTGAATCTGTATCACATTCGACAGAG
CAACTTATTCGACCAACCAGCACTGGCTATCAAATGTCATCCATTTTATC
CAGTATTTCAACAGAGGAGCCAAATCTAGATTGTGACTACAGACTTGGAA
TCTACCGATCACCAGACAGCTTTGTAACAATATGGAAAAATCAATCAACC
AACCAGCTTCTCGTCACCAAAGGGAATCAAACAGGCTTGAATGGAACTTT
TACCGGCCGATGTTCGAAATTCAGTTTCATATCAGATGGTGTTTATACCT
TTGGATTGTTTGAAGATAAATGTTCATTGAAACTGAAATCAGATAATGGA
AACATGACCATTTATCAGAAGTTGGTGTGTTATAAAGATTCAACCGAGAT
GAACTGCGTCTCCAGTACTTGTACTACGTCTTCAATCCTCAGCAGTCGCA
ATGCCACAACTGTTTTGACAGAAATGATGACAGAATCGAATTCTAATGTT
TCTGAAACAGTCACAAACCGTATTTATCATAGTGAATCTGTATCACATTC
GACAGAGCAACTTATTCGACCAACCAGCACTGGCTATCAAATGTCATCCA
TTTTATCCAGTATTTCAACAGAGGAGCCAAATCTAGATTGTGACTACAGA
CTTGGAATCTACCGATCACCAGACAGCTTTGTAACAATATGGAAAAATCA
ATCAACCAACCAGCTTCTCGTCACCAAAGGGAATCAAACAGGCTTGAATG
GAACTTTTACCGGCCGATGTTCGAAATTCAGTTTCATATCAGATGGTGTT
TATACCTTTGGATTGTTTGAAGATAAATGTTCATTGAAACTGAAATCAGA
TAATGGAAACATGACCATTTATCAGAAGTTGGTGTGTTATAAAGATTCAA
CCGAGATGAACTGCGTCTCCAGTACTTGTACTACGTCTTCAATCCTCAGC
AGTCGCAATGCCACAACTGTTTTGACAGAAATGATGACAGAATCGAATTC
TAATGTTTCTGAAACAGTCACAAACCGTATTTATCATAGTGAATCTGTAT
CACATTCGACAGAGCAACTTATTCGACCAACCAGCACTGGCTATCAAATG
TCATCCATTTTATCCAGTATTTCAACAGAGGAGCCAAATCTAGATTGTGA
CTACAGACTTGGAATCTACCGATCACCAGACAGCTTTGTAACAATATGGA
AAAATCAATCAACCAACCAGCTTCTCGTCACCAAAGGGAATCAAACAGGC
TTGAATGGAACTTTTACCGGCCGATGTTCGAAATTCAGTTTCATATCAGA
TGGTGTTTATACCTTTGGATTGTTTGAAGATAAATGTTCATTGAAACTGA
AATCAGATAATGGAAACATGACCATTTATCAGAAGTTGGTGTGTTATAAA
GATTCAACCGAGATGAACTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062147-exon-scaffold_362-1491911889:17428..17658 | TCONS_00062147-exon-scaffold_362-1491911889:17428..17658 | Clytia hemisphaerica | exon |
| TCONS_00062147-exon-scaffold_362-1510915933:17428..17658 | TCONS_00062147-exon-scaffold_362-1510915933:17428..17658 | Clytia hemisphaerica | exon |
| TCONS_00062147-exon-scaffold_362-1575043694:17428..17658 | TCONS_00062147-exon-scaffold_362-1575043694:17428..17658 | Clytia hemisphaerica | exon |
| TCONS_00062147-exon-scaffold_362-1491911889:18202..18459 | TCONS_00062147-exon-scaffold_362-1491911889:18202..18459 | Clytia hemisphaerica | exon |
| TCONS_00062147-exon-scaffold_362-1510915933:18202..18459 | TCONS_00062147-exon-scaffold_362-1510915933:18202..18459 | Clytia hemisphaerica | exon |
| TCONS_00062147-exon-scaffold_362-1575043694:18202..18459 | TCONS_00062147-exon-scaffold_362-1575043694:18202..18459 | Clytia hemisphaerica | exon |
| TCONS_00062147-exon-scaffold_362-1491911889:20994..21015 | TCONS_00062147-exon-scaffold_362-1491911889:20994..21015 | Clytia hemisphaerica | exon |
| TCONS_00062147-exon-scaffold_362-1510915933:20994..21015 | TCONS_00062147-exon-scaffold_362-1510915933:20994..21015 | Clytia hemisphaerica | exon |
| TCONS_00062147-exon-scaffold_362-1575043694:20994..21015 | TCONS_00062147-exon-scaffold_362-1575043694:20994..21015 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:17428..21015 + |
Blast
The following BLAST results are available for this feature:
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