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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062138 ID=TCONS_00062138|Name=TCONS_00062138|organism=Clytia hemisphaerica|type=transcript|length=1179bp
GTGTTGTCAAGGTGGGCCATAATGTTGCTGTGTAAAATATGCTCCAAAAT
TTTACAGGATATGGAGGTAAGACTGATGGGCCTGTAGTTACAGGCTTTGG
ATTTGTCGGCTTTACCAGGTTTGAACACAGGGGCAACCAGGGCATGCCTC
CAGTCATCTGGGATGGAAGACTGTTTGAGTGAAGCTTGCATCACTAAGGT
AAGACCAGGAGATATTTGGTCAGCAAACTCATTGAGAAATCTTGATGAGA
CACCATCTGGACCAGCAGCTTTGTTAGGGTTGATATCGTTAAGCAGTTTC
CGAACACCAGGTTCTGTGATATTAATTTCTGGCATGGGTGTATTCGCTTG
ACCCTGCAGGGGTGGGATTCGATCGTCAGGAATAGAGAAGACATTTGAAA
ACTGTTTGTTGAGGATGATCGCTTTCTTGGTGTTATCAATGTGTAAGCTG
CCTGAATCGAAACAGTTTCTTAGGATTATTTACCCCATCTGGGCTTACAC
AGTTTTTGACAAAGTTATTGAATGCTGATTTGCAAGCTTTCCTGCATTCG
TTTGTTAGCTTTTTGAAGCGATCCCAGTCTGCaggttttgataatttttt
ggcTCGCTTGTAGGCCCTCTTCTTTCGCCGAGATAGCCTTTTACATTTCT
GTGTTATCCAAGGTTGAGAATAACGACTTGATGCAGCTTGATGTGTATTT
TGAAGGGACGGATAGCATGGCATTTTCGATAAGACCTTTGAGGGCTTTCC
ACATGTCATCAACAGGGGATTCAGAGTTGTAAGTAGTGGTAAACTCAGCA
ATTTCAGCAGAGATTTGATCTTTGATGGACCCAATGTTTGCTCGGTTCCA
CATGAAGATTTTGTGTTTGCTAGGTTTGGATCGAATAGGATGACATACCA
TGTCAAGAAGAACAGCTGTTTAATTTAGTCCCAAAACTGGGTGAGGGGCT
ATTCTGCTGACAAAAGTTGGTCGATTTGTTGCGATGATGTCAAGAGTGTT
TTCCTGACGTGTAGGAAACTTGACTAGCTGCTCTAAGCCACAATCATCAA
AAGTCTCGAGGAAGCCTTCGCTGATGttctttttgtaattattgCTAGCA
ATAGTGTTATTGTTCCAGTCTATATCTGGAAGATTTGTATCACCACCAAA
CCAATGTGGAGAGTTTTTGAATGTGTTAT Run BLAST on NCBI protein sequence of TCONS_00062138-protein >TCONS_00062138-protein ID=TCONS_00062138-protein|Name=TCONS_00062138-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MPEINITEPGVRKLLNDINPNKAAGPDGVSSRFLNEFADQISPGLTLVMQ
ASLKQSSIPDDWRHALVAPVFKPGKADKSKACNYRPISLTSISCKILEHI
LHSNIMAHLDN Run BLAST on NCBI transcript from alignment at scaffold_361:1583844..1585022 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062138 ID=TCONS_00062138|Name=TCONS_00062138|organism=Clytia hemisphaerica|type=transcript|length=1179bp|location=Sequence derived from alignment at scaffold_361:1583844..1585022 (Clytia hemisphaerica)
ATAACACATTCAAAAACTCTCCACATTGGTTTGGTGGTGATACAAATCTT
CCAGATATAGACTGGAACAATAACACTATTGCTAGcaataattacaaaaa
gaaCATCAGCGAAGGCTTCCTCGAGACTTTTGATGATTGTGGCTTAGAGC
AGCTAGTCAAGTTTCCTACACGTCAGGAAAACACTCTTGACATCATCGCA
ACAAATCGACCAACTTTTGTCAGCAGAATAGCCCCTCACCCAGTTTTGGG
ACTAAATTAAACAGCTGTTCTTCTTGACATGGTATGTCATCCTATTCGAT
CCAAACCTAGCAAACACAAAATCTTCATGTGGAACCGAGCAAACATTGGG
TCCATCAAAGATCAAATCTCTGCTGAAATTGCTGAGTTTACCACTACTTA
CAACTCTGAATCCCCTGTTGATGACATGTGGAAAGCCCTCAAAGGTCTTA
TCGAAAATGCCATGCTATCCGTCCCTTCAAAATACACATCAAGCTGCATC
AAGTCGTTATTCTCAACCTTGGATAACACAGAAATGTAAAAGGCTATCTC
GGCGAAAGAAGAGGGCCTACAAGCGAgccaaaaaattatcaaaacctGCA
GACTGGGATCGCTTCAAAAAGCTAACAAACGAATGCAGGAAAGCTTGCAA
ATCAGCATTCAATAACTTTGTCAAAAACTGTGTAAGCCCAGATGGGGTAA
ATAATCCTAAGAAACTGTTTCGATTCAGGCAGCTTACACATTGATAACAC
CAAGAAAGCGATCATCCTCAACAAACAGTTTTCAAATGTCTTCTCTATTC
CTGACGATCGAATCCCACCCCTGCAGGGTCAAGCGAATACACCCATGCCA
GAAATTAATATCACAGAACCTGGTGTTCGGAAACTGCTTAACGATATCAA
CCCTAACAAAGCTGCTGGTCCAGATGGTGTCTCATCAAGATTTCTCAATG
AGTTTGCTGACCAAATATCTCCTGGTCTTACCTTAGTGATGCAAGCTTCA
CTCAAACAGTCTTCCATCCCAGATGACTGGAGGCATGCCCTGGTTGCCCC
TGTGTTCAAACCTGGTAAAGCCGACAAATCCAAAGCCTGTAACTACAGGC
CCATCAGTCTTACCTCCATATCCTGTAAAATTTTGGAGCATATTTTACAC
AGCAACATTATGGCCCACCTTGACAACAC Coding sequence (CDS) from alignment at scaffold_361:1583844..1585022 >TCONS_00062138 ID=TCONS_00062138|Name=TCONS_00062138|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_361:1583844..1585022 (Clytia hemisphaerica)
ATGCCAGAAATTAATATCACAGAACCTGGTGTTCGGAAACTGCTTAACGA
TATCAACCCTAACAAAGCTGCTGGTCCAGATGGTGTCTCATCAAGATTTC
TCAATGAGTTTGCTGACCAAATATCTCCTGGTCTTACCTTAGTGATGCAA
GCTTCACTCAAACAGTCTTCCATCCCAGATGACTGGAGGCATGCCCTGGT
TGCCCCTGTGTTCAAACCTGGTAAAGCCGACAAATCCAAAGCCTGTAACT
ACAGGCCCATCAGTCTTACCTCCATATCCTGTAAAATTTTGGAGCATATT
TTACACAGCAACATTATGGCCCACCTTGACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062138-exon-scaffold_361-1491911889:1583844..1585022 | TCONS_00062138-exon-scaffold_361-1491911889:1583844..1585022 | Clytia hemisphaerica | exon |
| TCONS_00062138-exon-scaffold_361-1510915933:1583844..1585022 | TCONS_00062138-exon-scaffold_361-1510915933:1583844..1585022 | Clytia hemisphaerica | exon |
| TCONS_00062138-exon-scaffold_361-1575043694:1583844..1585022 | TCONS_00062138-exon-scaffold_361-1575043694:1583844..1585022 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1583844..1585022 . |
Blast
The following BLAST results are available for this feature:
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