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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062137 ID=TCONS_00062137|Name=TCONS_00062137|organism=Clytia hemisphaerica|type=transcript|length=1772bp
caaaaatgctagaattttgaccattttttgcacgaaagggatcgaaaatt
tgggggaaaacgCACTCCAAGGGTATGATCTTCACTGATTTttactgcac
tgtaagggtgaatttttaaagccaattttcggcccgcacataccgtcagt
ccgcaaacccagtgcccccctcccccgggaCTTCAAACCTGCAATCTTGG
GGCCACCAGTATTCTGGGGGCCAATTACTGTAAATTCTTTCCGTTTTTTC
CCTGTCACACTGTATATTACTTTTCGaattaaaagatattttataaaaat
catccAATCGATTCCCGTGATAGCGGAACAAACAACGTTCCcacttttct
tttcttctatttttcctattgttatttacaaaaatcaatCAATTCCATGT
CCGTACAATGCCGTTCAATTTCAGGTTCGTGTGAAGTTGGTTACTTCTTA
TAAAAATCGTGACAAGGTTGACACGTGCACCCCATGGGGACTGGAACCAT
CATTTGCGATCGCGGATGTGCACACACGTGAATCGATAAATGAATAAAAG
CAGTCGCTTTACAACATTTGCATCGATTATCGATGCCTTCGATATCACCC
ATACTGGGCGTATATTGGGCGGTACTTTTGGAATGACAATATCCTTCACA
TCCATACCATGTTAATACATTTGGTTTACTacaaagagaatgtgtcaagt
tcaatgtgatttttttcattcgACATCCAGTGTGGTGGTAAAACCCCCTG
TATGATCTCCGAACTGGATAGCCGGAATATGGACTCGATTGATATCGATT
CGTTTCACTCATCATGAGCATTATCGATAAAAACACGAATAAAGTCGACC
AAGACGAAGCCATCATTATTttataaagtgatttttttaaaagtcaatTC
GTTTCTGTCAATACTTTTTACATCATGTGAGGTTGCTTGTTGAGAAATAT
TTGATAACTatgaattttaaagtttgatcacaaaatacttctttatgtat
ttgattgaaaaatttcaacgtctttatttcaaaaataggTCGACATATTG
TGGTTTGTAGATAAGATCAATCACCGAAGAGTGACAAAGGAGAAAGTTAT
TTTATAGAGGGAACAAAGTAAAAATCAAGATAAATGCTGACGAAGGGGTA
TTTTATGTGGCATTCTTTCCCTTCGTAATATTTTCACATCCCTGTCTAAG
TGACCCGTTAAGAATTTTAAATTCAAGCGGGGTAAAAAGAGATAAATTTT
AATAGGGGCTGAAAATCACCTGTTTCTAATTAAGAGGTGGAAACTCCATG
TTTaaagctttcaaaatttatttcgcAGTCAATTGTGCCAGTATAGAGAA
ATTGTCTGAGTTACGAGGTGTATTGTCAACTCGTCTAACTTTGGTTTATT
CGGTCCCGTTATACAATGCTGGCTGGTGAGGCGGTTCAACAATTTGTGGA
TATCGAGATTCTGTACCCTCTGTTCACAATTCTGGCGGTGACAGCACATT
ATTGATTTCAAATTGCTTACGGTTGTAGCCAACGTTGTCTTGATGAAAAT
GGATTCTCTGTTGGAAAGCACATCGTTGATTTCAAATTGCTTACGGTTGT
AGCCAACGTTGTCTTGATGAAAATGGATTCTCTGTTAGAAAGATATCAAT
GATTTCAACGTAGCTGTTAATTGGGAAGATGCAAGGATATTATTAAGACC
AAAACCATCGATTCGATATCAGTAACACATTCAGTGGAGTCTTTTCGAGA
AAAGGTTTGCATTGATCTccta Run BLAST on NCBI protein sequence of TCONS_00062137-protein >TCONS_00062137-protein ID=TCONS_00062137-protein|Name=TCONS_00062137-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MMASSWSTLFVFLSIMLMMSETNRYQSSPYSGYPVRRSYRGFYHHTGCRM
KKITLNLTHSLCSKPNVLTWYGCEGYCHSKSTAQYTPSMGDIEGIDNRCK
CCKATAFIHLSIHVCAHPRSQMMVPVPMGCTCQPCHDFYKK Run BLAST on NCBI transcript from alignment at scaffold_361:1548850..1550621 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062137 ID=TCONS_00062137|Name=TCONS_00062137|organism=Clytia hemisphaerica|type=transcript|length=1772bp|location=Sequence derived from alignment at scaffold_361:1548850..1550621 (Clytia hemisphaerica)
taggAGATCAATGCAAACCTTTTCTCGAAAAGACTCCACTGAATGTGTTA
CTGATATCGAATCGATGGTTTTGGTCTTAATAATATCCTTGCATCTTCCC
AATTAACAGCTACGTTGAAATCATTGATATCTTTCTAACAGAGAATCCAT
TTTCATCAAGACAACGTTGGCTACAACCGTAAGCAATTTGAAATCAACGA
TGTGCTTTCCAACAGAGAATCCATTTTCATCAAGACAACGTTGGCTACAA
CCGTAAGCAATTTGAAATCAATAATGTGCTGTCACCGCCAGAATTGTGAA
CAGAGGGTACAGAATCTCGATATCCACAAATTGTTGAACCGCCTCACCAG
CCAGCATTGTATAACGGGACCGAATAAACCAAAGTTAGACGAGTTGACAA
TACACCTCGTAACTCAGACAATTTCTCTATACTGGCACAATTGACTgcga
aataaattttgaaagctttAAACATGGAGTTTCCACCTCTTAATTAGAAA
CAGGTGATTTTCAGCCCCTATTAAAATTTATCTCTTTTTACCCCGCTTGA
ATTTAAAATTCTTAACGGGTCACTTAGACAGGGATGTGAAAATATTACGA
AGGGAAAGAATGCCACATAAAATACCCCTTCGTCAGCATTTATCTTGATT
TTTACTTTGTTCCCTCTATAAAATAACTTTCTCCTTTGTCACTCTTCGGT
GATTGATCTTATCTACAAACCACAATATGTCGAcctatttttgaaataaa
gacgttgaaatttttcaatcaaatacataaagaagtattttgtgatcaaa
ctttaaaattcatAGTTATCAAATATTTCTCAACAAGCAACCTCACATGA
TGTAAAAAGTATTGACAGAAACGAattgacttttaaaaaaatcactttat
aaAATAATGATGGCTTCGTCTTGGTCGACTTTATTCGTGTTTTTATCGAT
AATGCTCATGATGAGTGAAACGAATCGATATCAATCGAGTCCATATTCCG
GCTATCCAGTTCGGAGATCATACAGGGGGTTTTACCACCACACTGGATGT
cgaatgaaaaaaatcacattgaacttgacacattctctttgtAGTAAACC
AAATGTATTAACATGGTATGGATGTGAAGGATATTGTCATTCCAAAAGTA
CCGCCCAATATACGCCCAGTATGGGTGATATCGAAGGCATCGATAATCGA
TGCAAATGTTGTAAAGCGACTGCTTTTATTCATTTATCGATTCACGTGTG
TGCACATCCGCGATCGCAAATGATGGTTCCAGTCCCCATGGGGTGCACGT
GTCAACCTTGTCACGATTTTTATAAGAAGTAACCAACTTCACACGAACCT
GAAATTGAACGGCATTGTACGGACATGGAATTGattgatttttgtaaata
acaataggaaaaatagaagaaaagaaaagtgGGAACGTTGTTTGTTCCGC
TATCACGGGAATCGATTggatgatttttataaaatatcttttaattCGAA
AAGTAATATACAGTGTGACAGGGAAAAAACGGAAAGAATTTACAGTAATT
GGCCCCCAGAATACTGGTGGCCCCAAGATTGCAGGTTTGAAGtcccgggg
gaggggggcactgggtttgcggactgacggtatgtgcgggccgaaaattg
gctttaaaaattcacccttacagtgcagtaaAAATCAGTGAAGATCATAC
CCTTGGAGTGcgttttcccccaaattttcgatccctttcgtgcaaaaaat
ggtcaaaattctagcatttttg Coding sequence (CDS) from alignment at scaffold_361:1548850..1550621 >TCONS_00062137 ID=TCONS_00062137|Name=TCONS_00062137|organism=Clytia hemisphaerica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_361:1548850..1550621 (Clytia hemisphaerica)
ATGATGGCTTCGTCTTGGTCGACTTTATTCGTGTTTTTATCGATAATGCT
CATGATGAGTGAAACGAATCGATATCAATCGAGTCCATATTCCGGCTATC
CAGTTCGGAGATCATACAGGGGGTTTTACCACCACACTGGATGTcgaatg
aaaaaaatcacattgaacttgacacattctctttgtAGTAAACCAAATGT
ATTAACATGGTATGGATGTGAAGGATATTGTCATTCCAAAAGTACCGCCC
AATATACGCCCAGTATGGGTGATATCGAAGGCATCGATAATCGATGCAAA
TGTTGTAAAGCGACTGCTTTTATTCATTTATCGATTCACGTGTGTGCACA
TCCGCGATCGCAAATGATGGTTCCAGTCCCCATGGGGTGCACGTGTCAAC
CTTGTCACGATTTTTATAAGAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062137-exon-scaffold_361-1491911889:1548850..1550621 | TCONS_00062137-exon-scaffold_361-1491911889:1548850..1550621 | Clytia hemisphaerica | exon |
| TCONS_00062137-exon-scaffold_361-1510915933:1548850..1550621 | TCONS_00062137-exon-scaffold_361-1510915933:1548850..1550621 | Clytia hemisphaerica | exon |
| TCONS_00062137-exon-scaffold_361-1575043694:1548850..1550621 | TCONS_00062137-exon-scaffold_361-1575043694:1548850..1550621 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1548850..1550621 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029034 | Cystine-knot_cytokine |
Blast
The following BLAST results are available for this feature:
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