TCONS_00062134 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062134
Unique NameTCONS_00062134
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2480

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062134 ID=TCONS_00062134|Name=TCONS_00062134|organism=Clytia hemisphaerica|type=transcript|length=2480bp
ACATCACACAGTTCTGAGTACCTTTATTGGAATTCTCAATCGTGGTAGCT
CGAAGGGAAACCAAAACAAAGTAAAATGGCGCTCCCTACGATCAAGCCAA
GTTGGATCAAAACTTACAAATCCAGAGCAGATTTCTCAACCAAAAGGATC
GAAAAAGAAAACCAAGTTCGTTCAACATGGAGTAATCACAATGCTTACTT
TAACAAGGCTAATAATATCGTAAGTAAGAATGACGATTGGACTTCTCAAC
Gatcgaaaaataaaagtttaaatgctgttgaaaaacttttcaatgaaatt
gaaaGCAAGGAAAGCTCTCTAAACAATTTGGAATATAGACGAGACAAGCT
CAGGAGCTTAATCTATTCAGAAGATGAAAAATATAGGAAGGAGATTCAAA
GTCTGAGGGGTAATAGGTATTCAAGTACTGAAGCCATGCAAGAAAAGTTA
GATGCTTTAGCAGCTGCCAAAGAAACTAAACGCAAAAAGGAGGCAGATGA
AAAACTTTATGAACACTGGAGGCAAAATGAACCAAGACTTAGGGAATTAG
AatcaaaaagaattgaaaagaatGCTTTAGGACAGTgggaaaatcaaatt
caaaaaaaggaggaagtgatcaaaacaaattttgaaacaCAAAGAAAGCT
TGATAACTACTTAAAAGAAGAGAATTTAAGGGCACAAGCTGAGGAAATCA
AGAAAGAAGAggcaagaaaaatgaaagcaagAATGTTGGCAGAGGAGCAG
CAACAACAAATAACTGAATTGAAAAGAAAGGAAAGTGAAGCTGATTTTCT
TCGAGGAGAAGAGcaaaaacttattgaaaatgAACAGTTATTGGAAAAAA
CTGAAGCAAAGCGCAAACTTTTCGATGAACAAAGGAAAAGACAAGACTAT
GGGATGGTTTTGATTAGGCAATACAAGCAACAACTAAAGCGAAAAAGCAA
GCAGGTTCAAGAAGCTCTTGAACATGACTTGCAACTTCTCAAAGAAATCA
ATCAAATAGAGAAACAGGAAATTCAATTAAAACAAGATCAAAAAGAGGAG
AGGCGTAAAGATGCAGAGTTTATGCAAAGAGTAATTGAAGATCAATTAAG
GGTTGAGAAAATTAGAGAAGCTGAGGTTGACCAACTATATCAACAGGAAG
CAAATCGTCAATGGAGGAAACGTGAGTCAGAATGGGAAATGGAAAGGTTA
GCTCGAGATCGTCTAATCAATGCAGTATTTCAAGAGCGACAACAACAAAT
TCAGCATAAAATGGAACAAATCCAGCAACGAAAACAAGAATCTATCATGG
AAAGAGAACAACTTTTGGAAGAGCTTGAAGATCATCAAAGGCTCACTCAT
AGAGAAAATGAGGCTGCTCTGAGTCAAAGAAAAATACGAGAACAAGAACT
CCATGAGCAAATTACAGCTAGAGAAAGTGAACGACAAATGCAGCAAAGGA
GAGAAATGGAAGATTATGACCTGGAAAAATTACAAGAAATGAGAATGAAT
GAAATGTACTCTGAAGAGGCTAAACGAATTGATTTAAACTCTTCAAACAA
ATGTTTTAGAAGAAAAAGAGTTGCCTTCACATAGggaaatcttataatgg
tttcCTTATATTCTGTCACTTGATATCTTAATATATTTCTTTAATCATAT
TGGGTATAAATGTAATTTTTAGTAAAAGTGAgtcaaaaatggtttcattt
taaaagttatcaagattttcaataaaaagtccCAATTAATGATGGGAGAA
AGCGTCATTGTTTTTCATACTCTCTGTACGTAATCACCATGACTTCCAGT
ATATACAGTATGATAAATCTTTTTAAAGGAATTTGATTGACCTTTAATTT
ATAGCATTTAAATTTACATGTTTGCAAAGGAAATGGCTATTGATTGCaaa
tatgtaaattttaaaTACTTTAAATTAAAGGTGTGTTAGTTACAGGCTAC
TACTTGAGTGTTTGTAGTTCTGGTGTCCTTTGATtgaatatttaaaatat
ttttaatcacTATAGATTAAAACCAACCCAACCCAAGACTGGCAACTTGC
AACTTCTCAACTCAAAAAATGCCATGCATCTTTTCTATACCTACCAGGAT
AgttgttttttaataaatcatggaaaattttttaaatgtttgatGAAAAT
TGCTTCAAATTTACATAGTTCTAACAAGGCAACTCAGGCAATATTTAAAG
GGCATGGAAAATGGCCTGCAACTAGAACTGGTTTAACCTTTTGAGAGCTC
TGTTTGTTCAATTTTATAAGTGCTTTACTGTAAAAGATctttatttcaat
gaatttttaaCCCAAATTTTTCAGTGTATATATTTGTGTAGAATGAGGAC
TCACTTATTGCTTTAATCAGGTGTAAACTTTTTAAGCTGTTATTTATTTT
GTCAACTTTACTTAAATTGATTATGATATATACTATATTGGAGATGtgta
ctttgaaaaaaaattatgttataGATCGAT
Run BLAST on NCBI

protein sequence of TCONS_00062134-protein

>TCONS_00062134-protein ID=TCONS_00062134-protein|Name=TCONS_00062134-protein|organism=Clytia hemisphaerica|type=polypeptide|length=502bp
MALPTIKPSWIKTYKSRADFSTKRIEKENQVRSTWSNHNAYFNKANNIVS
KNDDWTSQRSKNKSLNAVEKLFNEIESKESSLNNLEYRRDKLRSLIYSED
EKYRKEIQSLRGNRYSSTEAMQEKLDALAAAKETKRKKEADEKLYEHWRQ
NEPRLRELESKRIEKNALGQWENQIQKKEEVIKTNFETQRKLDNYLKEEN
LRAQAEEIKKEEARKMKARMLAEEQQQQITELKRKESEADFLRGEEQKLI
ENEQLLEKTEAKRKLFDEQRKRQDYGMVLIRQYKQQLKRKSKQVQEALEH
DLQLLKEINQIEKQEIQLKQDQKEERRKDAEFMQRVIEDQLRVEKIREAE
VDQLYQQEANRQWRKRESEWEMERLARDRLINAVFQERQQQIQHKMEQIQ
QRKQESIMEREQLLEELEDHQRLTHRENEAALSQRKIREQELHEQITARE
SERQMQQRREMEDYDLEKLQEMRMNEMYSEEAKRIDLNSSNKCFRRKRVA
FT
Run BLAST on NCBI

transcript from alignment at scaffold_361:1500280..1502759

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062134 ID=TCONS_00062134|Name=TCONS_00062134|organism=Clytia hemisphaerica|type=transcript|length=2480bp|location=Sequence derived from alignment at scaffold_361:1500280..1502759 (Clytia hemisphaerica)
ATCGATCtataacataattttttttcaaagtacaCATCTCCAATATAGTA TATATCATAATCAATTTAAGTAAAGTTGACAAAATAAATAACAGCTTAAA AAGTTTACACCTGATTAAAGCAATAAGTGAGTCCTCATTCTACACAAATA TATACACTGAAAAATTTGGGttaaaaattcattgaaataaagATCTTTTA CAGTAAAGCACTTATAAAATTGAACAAACAGAGCTCTCAAAAGGTTAAAC CAGTTCTAGTTGCAGGCCATTTTCCATGCCCTTTAAATATTGCCTGAGTT GCCTTGTTAGAACTATGTAAATTTGAAGCAATTTTCatcaaacatttaaa aaattttccatgatttattaaaaaacaacTATCCTGGTAGGTATAGAAAA GATGCATGGCATTTTTTGAGTTGAGAAGTTGCAAGTTGCCAGTCTTGGGT TGGGTTGGTTTTAATCTATAgtgattaaaaatattttaaatattcaATCA AAGGACACCAGAACTACAAACACTCAAGTAGTAGCCTGTAACTAACACAC CTTTAATTTAAAGTAtttaaaatttacatatttGCAATCAATAGCCATTT CCTTTGCAAACATGTAAATTTAAATGCTATAAATTAAAGGTCAATCAAAT TCCTTTAAAAAGATTTATCATACTGTATATACTGGAAGTCATGGTGATTA CGTACAGAGAGTATGAAAAACAATGACGCTTTCTCCCATCATTAATTGgg actttttattgaaaatcttgataacttttaaaatgaaaccatttttgacT CACTTTTACTAAAAATTACATTTATACCCAATATGATTAAAGAAATATAT TAAGATATCAAGTGACAGAATATAAGgaaaccattataagatttccCTAT GTGAAGGCAACTCTTTTTCTTCTAAAACATTTGTTTGAAGAGTTTAAATC AATTCGTTTAGCCTCTTCAGAGTACATTTCATTCATTCTCATTTCTTGTA ATTTTTCCAGGTCATAATCTTCCATTTCTCTCCTTTGCTGCATTTGTCGT TCACTTTCTCTAGCTGTAATTTGCTCATGGAGTTCTTGTTCTCGTATTTT TCTTTGACTCAGAGCAGCCTCATTTTCTCTATGAGTGAGCCTTTGATGAT CTTCAAGCTCTTCCAAAAGTTGTTCTCTTTCCATGATAGATTCTTGTTTT CGTTGCTGGATTTGTTCCATTTTATGCTGAATTTGTTGTTGTCGCTCTTG AAATACTGCATTGATTAGACGATCTCGAGCTAACCTTTCCATTTCCCATT CTGACTCACGTTTCCTCCATTGACGATTTGCTTCCTGTTGATATAGTTGG TCAACCTCAGCTTCTCTAATTTTCTCAACCCTTAATTGATCTTCAATTAC TCTTTGCATAAACTCTGCATCTTTACGCCTCTCCTCTTTTTGATCTTGTT TTAATTGAATTTCCTGTTTCTCTATTTGATTGATTTCTTTGAGAAGTTGC AAGTCATGTTCAAGAGCTTCTTGAACCTGCTTGCTTTTTCGCTTTAGTTG TTGCTTGTATTGCCTAATCAAAACCATCCCATAGTCTTGTCTTTTCCTTT GTTCATCGAAAAGTTTGCGCTTTGCTTCAGTTTTTTCCAATAACTGTTca ttttcaataagtttttgCTCTTCTCCTCGAAGAAAATCAGCTTCACTTTC CTTTCTTTTCAATTCAGTTATTTGTTGTTGCTGCTCCTCTGCCAACATTc ttgctttcatttttcttgccTCTTCTTTCTTGATTTCCTCAGCTTGTGCC CTTAAATTCTCTTCTTTTAAGTAGTTATCAAGCTTTCTTTGtgtttcaaa atttgttttgatcacttcctcctttttttgaatttgattttcccACTGTC CTAAAGCattcttttcaattctttttgatTCTAATTCCCTAAGTCTTGGT TCATTTTGCCTCCAGTGTTCATAAAGTTTTTCATCTGCCTCCTTTTTGCG TTTAGTTTCTTTGGCAGCTGCTAAAGCATCTAACTTTTCTTGCATGGCTT CAGTACTTGAATACCTATTACCCCTCAGACTTTGAATCTCCTTCCTATAT TTTTCATCTTCTGAATAGATTAAGCTCCTGAGCTTGTCTCGTCTATATTC CAAATTGTTTAGAGAGCTTTCCTTGCtttcaatttcattgaaaagttttt caacagcatttaaacttttatttttcgatCGTTGAGAAGTCCAATCGTCA TTCTTACTTACGATATTATTAGCCTTGTTAAAGTAAGCATTGTGATTACT CCATGTTGAACGAACTTGGTTTTCTTTTTCGATCCTTTTGGTTGAGAAAT CTGCTCTGGATTTGTAAGTTTTGATCCAACTTGGCTTGATCGTAGGGAGC GCCATTTTACTTTGTTTTGGTTTCCCTTCGAGCTACCACGATTGAGAATT CCAATAAAGGTACTCAGAACTGTGTGATGT

Coding sequence (CDS) from alignment at scaffold_361:1500280..1502759

>TCONS_00062134 ID=TCONS_00062134|Name=TCONS_00062134|organism=Clytia hemisphaerica|type=CDS|length=1509bp|location=Sequence derived from alignment at scaffold_361:1500280..1502759 (Clytia hemisphaerica)
CTATGTGAAGGCAACTCTTTTTCTTCTAAAACATTTGTTTGAAGAGTTTA
AATCAATTCGTTTAGCCTCTTCAGAGTACATTTCATTCATTCTCATTTCT
TGTAATTTTTCCAGGTCATAATCTTCCATTTCTCTCCTTTGCTGCATTTG
TCGTTCACTTTCTCTAGCTGTAATTTGCTCATGGAGTTCTTGTTCTCGTA
TTTTTCTTTGACTCAGAGCAGCCTCATTTTCTCTATGAGTGAGCCTTTGA
TGATCTTCAAGCTCTTCCAAAAGTTGTTCTCTTTCCATGATAGATTCTTG
TTTTCGTTGCTGGATTTGTTCCATTTTATGCTGAATTTGTTGTTGTCGCT
CTTGAAATACTGCATTGATTAGACGATCTCGAGCTAACCTTTCCATTTCC
CATTCTGACTCACGTTTCCTCCATTGACGATTTGCTTCCTGTTGATATAG
TTGGTCAACCTCAGCTTCTCTAATTTTCTCAACCCTTAATTGATCTTCAA
TTACTCTTTGCATAAACTCTGCATCTTTACGCCTCTCCTCTTTTTGATCT
TGTTTTAATTGAATTTCCTGTTTCTCTATTTGATTGATTTCTTTGAGAAG
TTGCAAGTCATGTTCAAGAGCTTCTTGAACCTGCTTGCTTTTTCGCTTTA
GTTGTTGCTTGTATTGCCTAATCAAAACCATCCCATAGTCTTGTCTTTTC
CTTTGTTCATCGAAAAGTTTGCGCTTTGCTTCAGTTTTTTCCAATAACTG
TTcattttcaataagtttttgCTCTTCTCCTCGAAGAAAATCAGCTTCAC
TTTCCTTTCTTTTCAATTCAGTTATTTGTTGTTGCTGCTCCTCTGCCAAC
ATTcttgctttcatttttcttgccTCTTCTTTCTTGATTTCCTCAGCTTG
TGCCCTTAAATTCTCTTCTTTTAAGTAGTTATCAAGCTTTCTTTGtgttt
caaaatttgttttgatcacttcctcctttttttgaatttgattttcccAC
TGTCCTAAAGCattcttttcaattctttttgatTCTAATTCCCTAAGTCT
TGGTTCATTTTGCCTCCAGTGTTCATAAAGTTTTTCATCTGCCTCCTTTT
TGCGTTTAGTTTCTTTGGCAGCTGCTAAAGCATCTAACTTTTCTTGCATG
GCTTCAGTACTTGAATACCTATTACCCCTCAGACTTTGAATCTCCTTCCT
ATATTTTTCATCTTCTGAATAGATTAAGCTCCTGAGCTTGTCTCGTCTAT
ATTCCAAATTGTTTAGAGAGCTTTCCTTGCtttcaatttcattgaaaagt
ttttcaacagcatttaaacttttatttttcgatCGTTGAGAAGTCCAATC
GTCATTCTTACTTACGATATTATTAGCCTTGTTAAAGTAAGCATTGTGAT
TACTCCATGTTGAACGAACTTGGTTTTCTTTTTCGATCCTTTTGGTTGAG
AAATCTGCTCTGGATTTGTAAGTTTTGATCCAACTTGGCTTGATCGTAGG
GAGCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038957XLOC_038957Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062134-proteinTCONS_00062134-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062134-exon-scaffold_361-1491911889:1500280..1502759TCONS_00062134-exon-scaffold_361-1491911889:1500280..1502759Clytia hemisphaericaexon
TCONS_00062134-exon-scaffold_361-1510915933:1500280..1502759TCONS_00062134-exon-scaffold_361-1510915933:1500280..1502759Clytia hemisphaericaexon
TCONS_00062134-exon-scaffold_361-1575043694:1500280..1502759TCONS_00062134-exon-scaffold_361-1575043694:1500280..1502759Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1500280..1502759 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.278 16.5136 6.4031 4.96655 36.5095 25.5874 17.8954 16.3022 12.2429 14.5126 13.1208 9.33258 6.25463 5.41651 5.12728 6.85415 7.79874 8.69064 3.71988 4.83098 5.78495 6.29909 14.0609 13.6628 19.6241 19.0708 11.9529 7.79561 11.0625 11.6066
Blast
BLAST of TCONS_00062134 vs. Swiss-Prot (Human)
Match: TCHP (Trichoplein keratin filament-binding protein OS=Homo sapiens GN=TCHP PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 9.997e-44
Identity = 158/451 (35.03%), Postives = 268/451 (59.42%), Query Frame = 1
Query:   76 MALPTIKPSWIKTYKSRADFSTKRIEKENQVRSTWSNHNAYFNKANNIVSKNDDWTSQRSKNKSLNAVEKLFNEIESKESSLNNLEYRRDKLRSLIYSEDEKYRKEIQSLRGNRYSSTEAMQEKLDXXXXXXXXXXXXXXXXXLYEHWRQNEPRLRELESKRIEKNALGQWENQIQKKEEVIKTNFETQRKLDNYLKEENLRAQAEEIKK----EEARKMKARMLAEEQQQQITELKRKESEADFLRGEEQKLIENEQLLEKTEAKRKLFDEQRKRQDYGMVLIRQYKQQLKRKSKQVQEALEHDLQLLKEINQIEKQEIQLKQDQKEERRKDAEFMQRVIEDQLRVEKIREAEVDQLYQQEANRQWRKRESEWEMERLARDRLINAVFXXXXXXXXXXXXXXXXXKQESIMEREQLLEELEDHQRLTHRENEAALSQRKIREQELHEQIT 1416
            MALPT+   W    +     + +R E+E ++R  W  ++ YF  ++   SK  +W+S+ S  +S++A    +   + KE    +LE RR+KLR L+  E +   +E++ LR +       ++E+   L +AKE +RK  A++ LYEHW++N P+LRE+E    +K+ +  WE Q ++K++   T  +  ++ +N    E  RA+ E +++    EE R+++ ++ AE   QQ+ ELK KE EA  L+ E++ L++    LE+ E +RK  +  R++ + G  L  QY  QL R+++Q+QE LE D ++L+ + + E +  +L   ++E+   D  +M++ IE+QL++E+ REAE+  L ++EA   W KRE+EW  ER ARDRL++ V   RQQQIQ K+EQ ++ ++ES+  REQL+  LE+ + L  RE E +   +  R+QEL  Q+ 
Sbjct:    1 MALPTLPSYWCSQQRLNQQLARQR-EQEARLRQQWEQNSRYFRMSDICSSKQAEWSSKTSYQRSMHA----YQREKMKEEKRRSLEARREKLRQLMQEEQDLLARELEELRLSMNLQERRIREQHGKLKSAKEEQRKLIAEQLLYEHWKKNNPKLREMELDLHQKHVVNSWEMQKEEKKQQEATAEQENKRYEN----EYERARREALERMKAEEERRQLEDKLQAEALLQQMEELKLKEVEATKLKKEQENLLKQRWELERLEEERKQMEAFRQKAELGRFLRHQYNAQLSRRTQQIQEELEADRRILQALLEKEDESQRLHLARREQVMADVAWMKQAIEEQLQLERAREAELQMLLREEAKEMWEKREAEWARERSARDRLMSEVLTGRQQQIQEKIEQNRRAQEESLKHREQLIRNLEEVRELARREKEESEKLKSARKQELEAQVA 442          
The following BLAST results are available for this feature:
BLAST of TCONS_00062134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TCHP9.997e-4435.03Trichoplein keratin filament-binding protein OS=Ho... [more]
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