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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062134 ID=TCONS_00062134|Name=TCONS_00062134|organism=Clytia hemisphaerica|type=transcript|length=2480bp ACATCACACAGTTCTGAGTACCTTTATTGGAATTCTCAATCGTGGTAGCT CGAAGGGAAACCAAAACAAAGTAAAATGGCGCTCCCTACGATCAAGCCAA GTTGGATCAAAACTTACAAATCCAGAGCAGATTTCTCAACCAAAAGGATC GAAAAAGAAAACCAAGTTCGTTCAACATGGAGTAATCACAATGCTTACTT TAACAAGGCTAATAATATCGTAAGTAAGAATGACGATTGGACTTCTCAAC Gatcgaaaaataaaagtttaaatgctgttgaaaaacttttcaatgaaatt gaaaGCAAGGAAAGCTCTCTAAACAATTTGGAATATAGACGAGACAAGCT CAGGAGCTTAATCTATTCAGAAGATGAAAAATATAGGAAGGAGATTCAAA GTCTGAGGGGTAATAGGTATTCAAGTACTGAAGCCATGCAAGAAAAGTTA GATGCTTTAGCAGCTGCCAAAGAAACTAAACGCAAAAAGGAGGCAGATGA AAAACTTTATGAACACTGGAGGCAAAATGAACCAAGACTTAGGGAATTAG AatcaaaaagaattgaaaagaatGCTTTAGGACAGTgggaaaatcaaatt caaaaaaaggaggaagtgatcaaaacaaattttgaaacaCAAAGAAAGCT TGATAACTACTTAAAAGAAGAGAATTTAAGGGCACAAGCTGAGGAAATCA AGAAAGAAGAggcaagaaaaatgaaagcaagAATGTTGGCAGAGGAGCAG CAACAACAAATAACTGAATTGAAAAGAAAGGAAAGTGAAGCTGATTTTCT TCGAGGAGAAGAGcaaaaacttattgaaaatgAACAGTTATTGGAAAAAA CTGAAGCAAAGCGCAAACTTTTCGATGAACAAAGGAAAAGACAAGACTAT GGGATGGTTTTGATTAGGCAATACAAGCAACAACTAAAGCGAAAAAGCAA GCAGGTTCAAGAAGCTCTTGAACATGACTTGCAACTTCTCAAAGAAATCA ATCAAATAGAGAAACAGGAAATTCAATTAAAACAAGATCAAAAAGAGGAG AGGCGTAAAGATGCAGAGTTTATGCAAAGAGTAATTGAAGATCAATTAAG GGTTGAGAAAATTAGAGAAGCTGAGGTTGACCAACTATATCAACAGGAAG CAAATCGTCAATGGAGGAAACGTGAGTCAGAATGGGAAATGGAAAGGTTA GCTCGAGATCGTCTAATCAATGCAGTATTTCAAGAGCGACAACAACAAAT TCAGCATAAAATGGAACAAATCCAGCAACGAAAACAAGAATCTATCATGG AAAGAGAACAACTTTTGGAAGAGCTTGAAGATCATCAAAGGCTCACTCAT AGAGAAAATGAGGCTGCTCTGAGTCAAAGAAAAATACGAGAACAAGAACT CCATGAGCAAATTACAGCTAGAGAAAGTGAACGACAAATGCAGCAAAGGA GAGAAATGGAAGATTATGACCTGGAAAAATTACAAGAAATGAGAATGAAT GAAATGTACTCTGAAGAGGCTAAACGAATTGATTTAAACTCTTCAAACAA ATGTTTTAGAAGAAAAAGAGTTGCCTTCACATAGggaaatcttataatgg tttcCTTATATTCTGTCACTTGATATCTTAATATATTTCTTTAATCATAT TGGGTATAAATGTAATTTTTAGTAAAAGTGAgtcaaaaatggtttcattt taaaagttatcaagattttcaataaaaagtccCAATTAATGATGGGAGAA AGCGTCATTGTTTTTCATACTCTCTGTACGTAATCACCATGACTTCCAGT ATATACAGTATGATAAATCTTTTTAAAGGAATTTGATTGACCTTTAATTT ATAGCATTTAAATTTACATGTTTGCAAAGGAAATGGCTATTGATTGCaaa tatgtaaattttaaaTACTTTAAATTAAAGGTGTGTTAGTTACAGGCTAC TACTTGAGTGTTTGTAGTTCTGGTGTCCTTTGATtgaatatttaaaatat ttttaatcacTATAGATTAAAACCAACCCAACCCAAGACTGGCAACTTGC AACTTCTCAACTCAAAAAATGCCATGCATCTTTTCTATACCTACCAGGAT AgttgttttttaataaatcatggaaaattttttaaatgtttgatGAAAAT TGCTTCAAATTTACATAGTTCTAACAAGGCAACTCAGGCAATATTTAAAG GGCATGGAAAATGGCCTGCAACTAGAACTGGTTTAACCTTTTGAGAGCTC TGTTTGTTCAATTTTATAAGTGCTTTACTGTAAAAGATctttatttcaat gaatttttaaCCCAAATTTTTCAGTGTATATATTTGTGTAGAATGAGGAC TCACTTATTGCTTTAATCAGGTGTAAACTTTTTAAGCTGTTATTTATTTT GTCAACTTTACTTAAATTGATTATGATATATACTATATTGGAGATGtgta ctttgaaaaaaaattatgttataGATCGAT Run BLAST on NCBI protein sequence of TCONS_00062134-protein >TCONS_00062134-protein ID=TCONS_00062134-protein|Name=TCONS_00062134-protein|organism=Clytia hemisphaerica|type=polypeptide|length=502bp
MALPTIKPSWIKTYKSRADFSTKRIEKENQVRSTWSNHNAYFNKANNIVS KNDDWTSQRSKNKSLNAVEKLFNEIESKESSLNNLEYRRDKLRSLIYSED EKYRKEIQSLRGNRYSSTEAMQEKLDALAAAKETKRKKEADEKLYEHWRQ NEPRLRELESKRIEKNALGQWENQIQKKEEVIKTNFETQRKLDNYLKEEN LRAQAEEIKKEEARKMKARMLAEEQQQQITELKRKESEADFLRGEEQKLI ENEQLLEKTEAKRKLFDEQRKRQDYGMVLIRQYKQQLKRKSKQVQEALEH DLQLLKEINQIEKQEIQLKQDQKEERRKDAEFMQRVIEDQLRVEKIREAE VDQLYQQEANRQWRKRESEWEMERLARDRLINAVFQERQQQIQHKMEQIQ QRKQESIMEREQLLEELEDHQRLTHRENEAALSQRKIREQELHEQITARE SERQMQQRREMEDYDLEKLQEMRMNEMYSEEAKRIDLNSSNKCFRRKRVA FT Run BLAST on NCBI transcript from alignment at scaffold_361:1500280..1502759 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062134 ID=TCONS_00062134|Name=TCONS_00062134|organism=Clytia hemisphaerica|type=transcript|length=2480bp|location=Sequence derived from alignment at scaffold_361:1500280..1502759 (Clytia hemisphaerica) ATCGATCtataacataattttttttcaaagtacaCATCTCCAATATAGTA
TATATCATAATCAATTTAAGTAAAGTTGACAAAATAAATAACAGCTTAAA
AAGTTTACACCTGATTAAAGCAATAAGTGAGTCCTCATTCTACACAAATA
TATACACTGAAAAATTTGGGttaaaaattcattgaaataaagATCTTTTA
CAGTAAAGCACTTATAAAATTGAACAAACAGAGCTCTCAAAAGGTTAAAC
CAGTTCTAGTTGCAGGCCATTTTCCATGCCCTTTAAATATTGCCTGAGTT
GCCTTGTTAGAACTATGTAAATTTGAAGCAATTTTCatcaaacatttaaa
aaattttccatgatttattaaaaaacaacTATCCTGGTAGGTATAGAAAA
GATGCATGGCATTTTTTGAGTTGAGAAGTTGCAAGTTGCCAGTCTTGGGT
TGGGTTGGTTTTAATCTATAgtgattaaaaatattttaaatattcaATCA
AAGGACACCAGAACTACAAACACTCAAGTAGTAGCCTGTAACTAACACAC
CTTTAATTTAAAGTAtttaaaatttacatatttGCAATCAATAGCCATTT
CCTTTGCAAACATGTAAATTTAAATGCTATAAATTAAAGGTCAATCAAAT
TCCTTTAAAAAGATTTATCATACTGTATATACTGGAAGTCATGGTGATTA
CGTACAGAGAGTATGAAAAACAATGACGCTTTCTCCCATCATTAATTGgg
actttttattgaaaatcttgataacttttaaaatgaaaccatttttgacT
CACTTTTACTAAAAATTACATTTATACCCAATATGATTAAAGAAATATAT
TAAGATATCAAGTGACAGAATATAAGgaaaccattataagatttccCTAT
GTGAAGGCAACTCTTTTTCTTCTAAAACATTTGTTTGAAGAGTTTAAATC
AATTCGTTTAGCCTCTTCAGAGTACATTTCATTCATTCTCATTTCTTGTA
ATTTTTCCAGGTCATAATCTTCCATTTCTCTCCTTTGCTGCATTTGTCGT
TCACTTTCTCTAGCTGTAATTTGCTCATGGAGTTCTTGTTCTCGTATTTT
TCTTTGACTCAGAGCAGCCTCATTTTCTCTATGAGTGAGCCTTTGATGAT
CTTCAAGCTCTTCCAAAAGTTGTTCTCTTTCCATGATAGATTCTTGTTTT
CGTTGCTGGATTTGTTCCATTTTATGCTGAATTTGTTGTTGTCGCTCTTG
AAATACTGCATTGATTAGACGATCTCGAGCTAACCTTTCCATTTCCCATT
CTGACTCACGTTTCCTCCATTGACGATTTGCTTCCTGTTGATATAGTTGG
TCAACCTCAGCTTCTCTAATTTTCTCAACCCTTAATTGATCTTCAATTAC
TCTTTGCATAAACTCTGCATCTTTACGCCTCTCCTCTTTTTGATCTTGTT
TTAATTGAATTTCCTGTTTCTCTATTTGATTGATTTCTTTGAGAAGTTGC
AAGTCATGTTCAAGAGCTTCTTGAACCTGCTTGCTTTTTCGCTTTAGTTG
TTGCTTGTATTGCCTAATCAAAACCATCCCATAGTCTTGTCTTTTCCTTT
GTTCATCGAAAAGTTTGCGCTTTGCTTCAGTTTTTTCCAATAACTGTTca
ttttcaataagtttttgCTCTTCTCCTCGAAGAAAATCAGCTTCACTTTC
CTTTCTTTTCAATTCAGTTATTTGTTGTTGCTGCTCCTCTGCCAACATTc
ttgctttcatttttcttgccTCTTCTTTCTTGATTTCCTCAGCTTGTGCC
CTTAAATTCTCTTCTTTTAAGTAGTTATCAAGCTTTCTTTGtgtttcaaa
atttgttttgatcacttcctcctttttttgaatttgattttcccACTGTC
CTAAAGCattcttttcaattctttttgatTCTAATTCCCTAAGTCTTGGT
TCATTTTGCCTCCAGTGTTCATAAAGTTTTTCATCTGCCTCCTTTTTGCG
TTTAGTTTCTTTGGCAGCTGCTAAAGCATCTAACTTTTCTTGCATGGCTT
CAGTACTTGAATACCTATTACCCCTCAGACTTTGAATCTCCTTCCTATAT
TTTTCATCTTCTGAATAGATTAAGCTCCTGAGCTTGTCTCGTCTATATTC
CAAATTGTTTAGAGAGCTTTCCTTGCtttcaatttcattgaaaagttttt
caacagcatttaaacttttatttttcgatCGTTGAGAAGTCCAATCGTCA
TTCTTACTTACGATATTATTAGCCTTGTTAAAGTAAGCATTGTGATTACT
CCATGTTGAACGAACTTGGTTTTCTTTTTCGATCCTTTTGGTTGAGAAAT
CTGCTCTGGATTTGTAAGTTTTGATCCAACTTGGCTTGATCGTAGGGAGC
GCCATTTTACTTTGTTTTGGTTTCCCTTCGAGCTACCACGATTGAGAATT
CCAATAAAGGTACTCAGAACTGTGTGATGT Coding sequence (CDS) from alignment at scaffold_361:1500280..1502759 >TCONS_00062134 ID=TCONS_00062134|Name=TCONS_00062134|organism=Clytia hemisphaerica|type=CDS|length=1509bp|location=Sequence derived from alignment at scaffold_361:1500280..1502759 (Clytia hemisphaerica) CTATGTGAAGGCAACTCTTTTTCTTCTAAAACATTTGTTTGAAGAGTTTA AATCAATTCGTTTAGCCTCTTCAGAGTACATTTCATTCATTCTCATTTCT TGTAATTTTTCCAGGTCATAATCTTCCATTTCTCTCCTTTGCTGCATTTG TCGTTCACTTTCTCTAGCTGTAATTTGCTCATGGAGTTCTTGTTCTCGTA TTTTTCTTTGACTCAGAGCAGCCTCATTTTCTCTATGAGTGAGCCTTTGA TGATCTTCAAGCTCTTCCAAAAGTTGTTCTCTTTCCATGATAGATTCTTG TTTTCGTTGCTGGATTTGTTCCATTTTATGCTGAATTTGTTGTTGTCGCT CTTGAAATACTGCATTGATTAGACGATCTCGAGCTAACCTTTCCATTTCC CATTCTGACTCACGTTTCCTCCATTGACGATTTGCTTCCTGTTGATATAG TTGGTCAACCTCAGCTTCTCTAATTTTCTCAACCCTTAATTGATCTTCAA TTACTCTTTGCATAAACTCTGCATCTTTACGCCTCTCCTCTTTTTGATCT TGTTTTAATTGAATTTCCTGTTTCTCTATTTGATTGATTTCTTTGAGAAG TTGCAAGTCATGTTCAAGAGCTTCTTGAACCTGCTTGCTTTTTCGCTTTA GTTGTTGCTTGTATTGCCTAATCAAAACCATCCCATAGTCTTGTCTTTTC CTTTGTTCATCGAAAAGTTTGCGCTTTGCTTCAGTTTTTTCCAATAACTG TTcattttcaataagtttttgCTCTTCTCCTCGAAGAAAATCAGCTTCAC TTTCCTTTCTTTTCAATTCAGTTATTTGTTGTTGCTGCTCCTCTGCCAAC ATTcttgctttcatttttcttgccTCTTCTTTCTTGATTTCCTCAGCTTG TGCCCTTAAATTCTCTTCTTTTAAGTAGTTATCAAGCTTTCTTTGtgttt caaaatttgttttgatcacttcctcctttttttgaatttgattttcccAC TGTCCTAAAGCattcttttcaattctttttgatTCTAATTCCCTAAGTCT TGGTTCATTTTGCCTCCAGTGTTCATAAAGTTTTTCATCTGCCTCCTTTT TGCGTTTAGTTTCTTTGGCAGCTGCTAAAGCATCTAACTTTTCTTGCATG GCTTCAGTACTTGAATACCTATTACCCCTCAGACTTTGAATCTCCTTCCT ATATTTTTCATCTTCTGAATAGATTAAGCTCCTGAGCTTGTCTCGTCTAT ATTCCAAATTGTTTAGAGAGCTTTCCTTGCtttcaatttcattgaaaagt ttttcaacagcatttaaacttttatttttcgatCGTTGAGAAGTCCAATC GTCATTCTTACTTACGATATTATTAGCCTTGTTAAAGTAAGCATTGTGAT TACTCCATGTTGAACGAACTTGGTTTTCTTTTTCGATCCTTTTGGTTGAG AAATCTGCTCTGGATTTGTAAGTTTTGATCCAACTTGGCTTGATCGTAGG GAGCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00062134-exon-scaffold_361-1491911889:1500280..1502759 | TCONS_00062134-exon-scaffold_361-1491911889:1500280..1502759 | Clytia hemisphaerica | exon |
TCONS_00062134-exon-scaffold_361-1510915933:1500280..1502759 | TCONS_00062134-exon-scaffold_361-1510915933:1500280..1502759 | Clytia hemisphaerica | exon |
TCONS_00062134-exon-scaffold_361-1575043694:1500280..1502759 | TCONS_00062134-exon-scaffold_361-1575043694:1500280..1502759 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_361 | supercontig | scaffold_361:1500280..1502759 . |
Blast
BLAST of TCONS_00062134 vs. Swiss-Prot (Human)
Match: TCHP (Trichoplein keratin filament-binding protein OS=Homo sapiens GN=TCHP PE=1 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 9.997e-44 Identity = 158/451 (35.03%), Postives = 268/451 (59.42%), Query Frame = 1
Query: 76 MALPTIKPSWIKTYKSRADFSTKRIEKENQVRSTWSNHNAYFNKANNIVSKNDDWTSQRSKNKSLNAVEKLFNEIESKESSLNNLEYRRDKLRSLIYSEDEKYRKEIQSLRGNRYSSTEAMQEKLDXXXXXXXXXXXXXXXXXLYEHWRQNEPRLRELESKRIEKNALGQWENQIQKKEEVIKTNFETQRKLDNYLKEENLRAQAEEIKK----EEARKMKARMLAEEQQQQITELKRKESEADFLRGEEQKLIENEQLLEKTEAKRKLFDEQRKRQDYGMVLIRQYKQQLKRKSKQVQEALEHDLQLLKEINQIEKQEIQLKQDQKEERRKDAEFMQRVIEDQLRVEKIREAEVDQLYQQEANRQWRKRESEWEMERLARDRLINAVFXXXXXXXXXXXXXXXXXKQESIMEREQLLEELEDHQRLTHRENEAALSQRKIREQELHEQIT 1416
MALPT+ W + + +R E+E ++R W ++ YF ++ SK +W+S+ S +S++A + + KE +LE RR+KLR L+ E + +E++ LR + ++E+ L +AKE +RK A++ LYEHW++N P+LRE+E +K+ + WE Q ++K++ T + ++ +N E RA+ E +++ EE R+++ ++ AE QQ+ ELK KE EA L+ E++ L++ LE+ E +RK + R++ + G L QY QL R+++Q+QE LE D ++L+ + + E + +L ++E+ D +M++ IE+QL++E+ REAE+ L ++EA W KRE+EW ER ARDRL++ V RQQQIQ K+EQ ++ ++ES+ REQL+ LE+ + L RE E + + R+QEL Q+
Sbjct: 1 MALPTLPSYWCSQQRLNQQLARQR-EQEARLRQQWEQNSRYFRMSDICSSKQAEWSSKTSYQRSMHA----YQREKMKEEKRRSLEARREKLRQLMQEEQDLLARELEELRLSMNLQERRIREQHGKLKSAKEEQRKLIAEQLLYEHWKKNNPKLREMELDLHQKHVVNSWEMQKEEKKQQEATAEQENKRYEN----EYERARREALERMKAEEERRQLEDKLQAEALLQQMEELKLKEVEATKLKKEQENLLKQRWELERLEEERKQMEAFRQKAELGRFLRHQYNAQLSRRTQQIQEELEADRRILQALLEKEDESQRLHLARREQVMADVAWMKQAIEEQLQLERAREAELQMLLREEAKEMWEKREAEWARERSARDRLMSEVLTGRQQQIQEKIEQNRRAQEESLKHREQLIRNLEEVRELARREKEESEKLKSARKQELEAQVA 442
The following BLAST results are available for this feature:
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