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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062131 ID=TCONS_00062131|Name=TCONS_00062131|organism=Clytia hemisphaerica|type=transcript|length=1469bp
ACAGCTGCAAAGAAAGTACAAAATGGTGCAACATTACAACGCGATTATTG
TATAAAAGAAATAttcatgtttaaaaaattcttaattgaTTCGAAGTAAC
TAACAATTCTCTCCGACATAAAAGTGACGTGTATATAAAATATTATGCAT
TTCCCTAGCATAAGATAcacattaaaattattttatttacaaaaacatGG
TACACGAAATAATTCATTTCTTGCACAAATCATAATTTATATGTTCGAAC
AACTCCTCACCAGTCTCAAAAGTTTTAGCGTTAACATCACCGAAACATTC
CTCTCTCCTCTTCGGTAAAAATTGCCGGTAGTATAAGTCTTGCTTTTCAA
TAAATTGTGGACAATGCCACCATTCATCCCCGGTTAAAATAAGTATGTAA
ACATGTCTTTTGTTCTTTCCCTTGATAAGGGGATGGTTTCTCCAATTAAA
CTCAGTTTTACTCAAATGCCCGTCTGATGATTGCTTCATGCCTTTCCATT
tagaagaaaaatgaatttctaATGGTTCTTGGTTTACTTTAGAACGATGG
TTGTTTACTTTTCTTAAAATGGCCGACGCCATTGGAACATAAGTAAATTT
CATATAAACAACAGTGACGAATATCTTTCGAATCTCCTTCATGCAATCAT
CAGTGAAAAAATTTGTCTTAGATACGACCAAACGGTACGTCATATCGTAA
ACATCAAAGTCCGGATTTTTTATGACATCGAATAGTGTCTTGATGGCTGG
GTGCTGCATTGAAACACCATTGtaaaaattttccattgtttcaaTATTTC
GATTTAATGGAAGCCAATCTATTGGTTTATAATAAGTGTATATCCTGAAA
ACAATAACTGCCCATTGTCTCTCTTCCTGCAATAACTCCAGATATGCGAG
AATTTCATCAGCAACTGATCTGTTAAAACCTTGAATAAGGACAATAGTTT
GTTTAATGTTTTCGTCATTTCCCATGATTTTCTCATCGTAAAGCTGCTTT
ATTAGTTCGGCGAATCTACGCACTTCGTTCTCATATCGAGAGTATTTATG
TTTTGttcgaaattgaaattgattgaTATTGTAATTCTTTCTCAATCTGA
CTATGTCAAAACCGTCGAAGTAGTTCACCATAAAACATGCTTCGTTGTCA
AGCAAATCGTTTAATCCTTGCAAGAAAAAATGGTGATCAAAAGTAGCCTC
GTAATTATTAATATTATCATTTAAGCTTATGAAGGTGACGTTCCTGAACT
CTGAACACCCTAATATTGaaaagtctttaaaattttgcacaacACCATTG
GAAGCAGTAAAATAAACACATGTTGATATCACAAATACCAGTGTCACTTG
AAACATGtttctttctttctatttttcgcCTTCAAACGTTTTCAGTGTCG
ATGATAGAGTGATATTACTGCTACTATGgatctaaagtctgttcacgata
agtgtgcactctttttttc Run BLAST on NCBI protein sequence of TCONS_00062131-protein >TCONS_00062131-protein ID=TCONS_00062131-protein|Name=TCONS_00062131-protein|organism=Clytia hemisphaerica|type=polypeptide|length=380bp
MFQVTLVFVISTCVYFTASNGVVQNFKDFSILGCSEFRNVTFISLNDNIN
NYEATFDHHFFLQGLNDLLDNEACFMVNYFDGFDIVRLRKNYNINQFQFR
TKHKYSRYENEVRRFAELIKQLYDEKIMGNDENIKQTIVLIQGFNRSVAD
EILAYLELLQEERQWAVIVFRIYTYYKPIDWLPLNRNIETMENFYNGVSM
QHPAIKTLFDVIKNPDFDVYDMTYRLVVSKTNFFTDDCMKEIRKIFVTVV
YMKFTYVPMASAILRKVNNHRSKVNQEPLEIHFSSKWKGMKQSSDGHLSK
TEFNWRNHPLIKGKNKRHVYILILTGDEWWHCPQFIEKQDLYYRQFLPKR
REECFGDVNAKTFETGEELFEHINYDLCKK Run BLAST on NCBI transcript from alignment at scaffold_361:1369359..1370827 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062131 ID=TCONS_00062131|Name=TCONS_00062131|organism=Clytia hemisphaerica|type=transcript|length=1469bp|location=Sequence derived from alignment at scaffold_361:1369359..1370827 (Clytia hemisphaerica)
gaaaaaaagagtgcacacttatcgtgaacagactttagatcCATAGTAGC
AGTAATATCACTCTATCATCGACACTGAAAACGTTTGAAGgcgaaaaata
gaaagaaagaaaCATGTTTCAAGTGACACTGGTATTTGTGATATCAACAT
GTGTTTATTTTACTGCTTCCAATGGTgttgtgcaaaattttaaagacttt
tCAATATTAGGGTGTTCAGAGTTCAGGAACGTCACCTTCATAAGCTTAAA
TGATAATATTAATAATTACGAGGCTACTTTTGATCACCATTTTTTCTTGC
AAGGATTAAACGATTTGCTTGACAACGAAGCATGTTTTATGGTGAACTAC
TTCGACGGTTTTGACATAGTCAGATTGAGAAAGAATTACAATAtcaatca
atttcaatttcgaaCAAAACATAAATACTCTCGATATGAGAACGAAGTGC
GTAGATTCGCCGAACTAATAAAGCAGCTTTACGATGAGAAAATCATGGGA
AATGACGAAAACATTAAACAAACTATTGTCCTTATTCAAGGTTTTAACAG
ATCAGTTGCTGATGAAATTCTCGCATATCTGGAGTTATTGCAGGAAGAGA
GACAATGGGCAGTTATTGTTTTCAGGATATACACTTATTATAAACCAATA
GATTGGCTTCCATTAAATCGAAATAttgaaacaatggaaaatttttaCAA
TGGTGTTTCAATGCAGCACCCAGCCATCAAGACACTATTCGATGTCATAA
AAAATCCGGACTTTGATGTTTACGATATGACGTACCGTTTGGTCGTATCT
AAGACAAATTTTTTCACTGATGATTGCATGAAGGAGATTCGAAAGATATT
CGTCACTGTTGTTTATATGAAATTTACTTATGTTCCAATGGCGTCGGCCA
TTTTAAGAAAAGTAAACAACCATCGTTCTAAAGTAAACCAAGAACCATta
gaaattcatttttcttctaAATGGAAAGGCATGAAGCAATCATCAGACGG
GCATTTGAGTAAAACTGAGTTTAATTGGAGAAACCATCCCCTTATCAAGG
GAAAGAACAAAAGACATGTTTACATACTTATTTTAACCGGGGATGAATGG
TGGCATTGTCCACAATTTATTGAAAAGCAAGACTTATACTACCGGCAATT
TTTACCGAAGAGGAGAGAGGAATGTTTCGGTGATGTTAACGCTAAAACTT
TTGAGACTGGTGAGGAGTTGTTCGAACATATAAATTATGATTTGTGCAAG
AAATGAATTATTTCGTGTACCatgtttttgtaaataaaataattttaatg
tgTATCTTATGCTAGGGAAATGCATAATATTTTATATACACGTCACTTTT
ATGTCGGAGAGAATTGTTAGTTACTTCGAAtcaattaagaattttttaaa
catgaaTATTTCTTTTATACAATAATCGCGTTGTAATGTTGCACCATTTT
GTACTTTCTTTGCAGCTGT Coding sequence (CDS) from alignment at scaffold_361:1369359..1370827 >TCONS_00062131 ID=TCONS_00062131|Name=TCONS_00062131|organism=Clytia hemisphaerica|type=CDS|length=1143bp|location=Sequence derived from alignment at scaffold_361:1369359..1370827 (Clytia hemisphaerica)
ATGTTTCAAGTGACACTGGTATTTGTGATATCAACATGTGTTTATTTTAC
TGCTTCCAATGGTgttgtgcaaaattttaaagacttttCAATATTAGGGT
GTTCAGAGTTCAGGAACGTCACCTTCATAAGCTTAAATGATAATATTAAT
AATTACGAGGCTACTTTTGATCACCATTTTTTCTTGCAAGGATTAAACGA
TTTGCTTGACAACGAAGCATGTTTTATGGTGAACTACTTCGACGGTTTTG
ACATAGTCAGATTGAGAAAGAATTACAATAtcaatcaatttcaatttcga
aCAAAACATAAATACTCTCGATATGAGAACGAAGTGCGTAGATTCGCCGA
ACTAATAAAGCAGCTTTACGATGAGAAAATCATGGGAAATGACGAAAACA
TTAAACAAACTATTGTCCTTATTCAAGGTTTTAACAGATCAGTTGCTGAT
GAAATTCTCGCATATCTGGAGTTATTGCAGGAAGAGAGACAATGGGCAGT
TATTGTTTTCAGGATATACACTTATTATAAACCAATAGATTGGCTTCCAT
TAAATCGAAATAttgaaacaatggaaaatttttaCAATGGTGTTTCAATG
CAGCACCCAGCCATCAAGACACTATTCGATGTCATAAAAAATCCGGACTT
TGATGTTTACGATATGACGTACCGTTTGGTCGTATCTAAGACAAATTTTT
TCACTGATGATTGCATGAAGGAGATTCGAAAGATATTCGTCACTGTTGTT
TATATGAAATTTACTTATGTTCCAATGGCGTCGGCCATTTTAAGAAAAGT
AAACAACCATCGTTCTAAAGTAAACCAAGAACCATtagaaattcattttt
cttctaAATGGAAAGGCATGAAGCAATCATCAGACGGGCATTTGAGTAAA
ACTGAGTTTAATTGGAGAAACCATCCCCTTATCAAGGGAAAGAACAAAAG
ACATGTTTACATACTTATTTTAACCGGGGATGAATGGTGGCATTGTCCAC
AATTTATTGAAAAGCAAGACTTATACTACCGGCAATTTTTACCGAAGAGG
AGAGAGGAATGTTTCGGTGATGTTAACGCTAAAACTTTTGAGACTGGTGA
GGAGTTGTTCGAACATATAAATTATGATTTGTGCAAGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062131-exon-scaffold_361-1491911889:1369359..1370827 | TCONS_00062131-exon-scaffold_361-1491911889:1369359..1370827 | Clytia hemisphaerica | exon |
| TCONS_00062131-exon-scaffold_361-1510915933:1369359..1370827 | TCONS_00062131-exon-scaffold_361-1510915933:1369359..1370827 | Clytia hemisphaerica | exon |
| TCONS_00062131-exon-scaffold_361-1575043694:1369359..1370827 | TCONS_00062131-exon-scaffold_361-1575043694:1369359..1370827 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1369359..1370827 . |
Blast
The following BLAST results are available for this feature:
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