TCONS_00062126 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062126
Unique NameTCONS_00062126
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length678

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062126 ID=TCONS_00062126|Name=TCONS_00062126|organism=Clytia hemisphaerica|type=transcript|length=678bp
TTTTCGTCTACTCAAGCAATTTGAATAGGTAGGGaggaaagtcggccgtc
taaactagagctaaccTTGTTATTCCATCTTCCCTTAAAACGTTTATATA
CAACTGTTTATATACTATTGATGCATACATCTAGTTTCGTACATAACCCA
TTGTATCGAGAGGGTTTCCAACCTTTCTCATTTAGGTGTTGATAACTTGT
AAATGCTCTCAATTCTTACGGTATTTGGTAAAGTCCGACCTGTATTTTAG
GCTTATATTCTTAGGTAGATTTTTTAACTAGAatcatttttaacaatttt
aatcCCAATATTAATGGTAATTTGGTACGCAGAATAAACGCAGTGTTATT
CTGAAATAATTTCATAGTATTTTTTATTCTCCAATctaaaatttcagttt
tctttatttcaaaGATAATGTGATTGATTCAAGAAACTTATTGAAATCGT
TTTTCGAATTCTATGATTCATAAAAAACTGTCTGTATCGCAAGGAAGGAA
GAATGCTGACGGCACGCGAATATAAAAGCTTGCTAATTTTGAAAcgaatt
attttaaagaaaagaagTTACCATTTAGAAGACGTTACTATCTTCAGTTA
CAAAACACATGAAGGGTTAGCGACTTGAAAGCGGTTTTATTAACTCAAAC
TTGTTAGgaagattttgttaaatttgtg
Run BLAST on NCBI

transcript from alignment at scaffold_361:1231198..1231875

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062126 ID=TCONS_00062126|Name=TCONS_00062126|organism=Clytia hemisphaerica|type=transcript|length=678bp|location=Sequence derived from alignment at scaffold_361:1231198..1231875 (Clytia hemisphaerica)
cacaaatttaacaaaatcttcCTAACAAGTTTGAGTTAATAAAACCGCTT
TCAAGTCGCTAACCCTTCATGTGTTTTGTAACTGAAGATAGTAACGTCTT
CTAAATGGTAActtcttttctttaaaataattcgTTTCAAAATTAGCAAG
CTTTTATATTCGCGTGCCGTCAGCATTCTTCCTTCCTTGCGATACAGACA
GTTTTTTATGAATCATAGAATTCGAAAAACGATTTCAATAAGTTTCTTGA
ATCAATCACATTATCtttgaaataaagaaaactgaaattttagATTGGAG
AATAAAAAATACTATGAAATTATTTCAGAATAACACTGCGTTTATTCTGC
GTACCAAATTACCATTAATATTGGgattaaaattgttaaaaatgatTCTA
GTTAAAAAATCTACCTAAGAATATAAGCCTAAAATACAGGTCGGACTTTA
CCAAATACCGTAAGAATTGAGAGCATTTACAAGTTATCAACACCTAAATG
AGAAAGGTTGGAAACCCTCTCGATACAATGGGTTATGTACGAAACTAGAT
GTATGCATCAATAGTATATAAACAGTTGTATATAAACGTTTTAAGGGAAG
ATGGAATAACAAggttagctctagtttagacggccgactttcctCCCTAC
CTATTCAAATTGCTTGAGTAGACGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038949XLOC_038949Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062126-exon-scaffold_361-1491911889:1231198..1231875TCONS_00062126-exon-scaffold_361-1491911889:1231198..1231875Clytia hemisphaericaexon
TCONS_00062126-exon-scaffold_361-1510915933:1231198..1231875TCONS_00062126-exon-scaffold_361-1510915933:1231198..1231875Clytia hemisphaericaexon
TCONS_00062126-exon-scaffold_361-1575043694:1231198..1231875TCONS_00062126-exon-scaffold_361-1575043694:1231198..1231875Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1231198..1231875 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.0609	13.2042	7.10893	8.46328	29.3795	20.5559	34.5253	31.6848	28.1753	24.2403	27.0536	30.53	19.4698	19.0701	20.0595	20.4206	22.9419	19.0911	3.45775	5.04878	20.1131	22.5819	20.5559	17.9786	7.79685	14.2794	17.737	16.0512	22.2496	15.5687
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062126 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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