TCONS_00062123 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062123
Unique NameTCONS_00062123
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length666

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062123 ID=TCONS_00062123|Name=TCONS_00062123|organism=Clytia hemisphaerica|type=transcript|length=666bp
catttttttgctgtaTTTTTACCTTTTCACGTAAGATATTTTTAGTAATT
ATGATAATTTATTGTCATGTCAAaacttttctttaatttctatGTATTAA
GTTTCAAGGCGAGTCTTTTATGACGATTGAATCTAACGGTGTctgtgttg
ttgttgttttttgtttatttttgaaaccTGCATAGGACTTAGGATTATTA
TTTTGTTTAAGATGGTAGAAATTTCTTGTAAATAATTACTAAGAGGGTGA
TATTAGATTTAGGTTCAATCGAAGGAGATTTGTTAAAAAGTGTCTAAAGT
AACATTAATCATTATCATTTTTATGAACTTGAGTTGCAATATTCAAAACT
TTAGTACCattgttacacgttttttttttaaaaacaaataataagAAGAA
AAGGTTTGgatttctaaaatttcaatcaagttaagaatattttaaggctt
ctaaAACACCAAATTCCCCAGGAAATAACTCAAAAATACTCGCAATATGG
TGGAAATAAGgtcattttatttaatattttgaggcttaaaacttaaaaac
ttaagaatagtcttcaaaagtttttgatgctcttataaaaaaatgtgtat
tatttcttcaaaatttattaCACATTGAAAATGAACTAGATATATTCTTT
TATGCTTGCATCAATT
Run BLAST on NCBI

transcript from alignment at scaffold_361:1150046..1150711

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062123 ID=TCONS_00062123|Name=TCONS_00062123|organism=Clytia hemisphaerica|type=transcript|length=666bp|location=Sequence derived from alignment at scaffold_361:1150046..1150711 (Clytia hemisphaerica)
AATTGATGCAAGCATAAAAGAATATATCTAGTTCATTTTCAATGTGtaat
aaattttgaagaaataatacacatttttttataagagcatcaaaaacttt
tgaagactattcttaagtttttaagttttaagcctcaaaatattaaataa
aatgacCTTATTTCCACCATATTGCGAGTATTTTTGAGTTATTTCCTGGG
GAATTTGGTGTTttagaagccttaaaatattcttaacttgattgaaattt
tagaaatcCAAACCTTTTCTTcttattatttgtttttaaaaaaaaaacgt
gtaacaatGGTACTAAAGTTTTGAATATTGCAACTCAAGTTCATAAAAAT
GATAATGATTAATGTTACTTTAGACACTTTTTAACAAATCTCCTTCGATT
GAACCTAAATCTAATATCACCCTCTTAGTAATTATTTACAAGAAATTTCT
ACCATCTTAAACAAAATAATAATCCTAAGTCCTATGCAggtttcaaaaat
aaacaaaaaacaacaacaacacagACACCGTTAGATTCAATCGTCATAAA
AGACTCGCCTTGAAACTTAATACatagaaattaaagaaaagttTTGACAT
GACAATAAATTATCATAATTACTAAAAATATCTTACGTGAAAAGGTAAAA
Atacagcaaaaaaatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038946XLOC_038946Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062123-exon-scaffold_361-1491911889:1150046..1150711TCONS_00062123-exon-scaffold_361-1491911889:1150046..1150711Clytia hemisphaericaexon
TCONS_00062123-exon-scaffold_361-1510915933:1150046..1150711TCONS_00062123-exon-scaffold_361-1510915933:1150046..1150711Clytia hemisphaericaexon
TCONS_00062123-exon-scaffold_361-1575043694:1150046..1150711TCONS_00062123-exon-scaffold_361-1575043694:1150046..1150711Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1150046..1150711 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.232895	0.378516	0.351595	0.257986	0.418763	0.330912	0.299424	0.280317	1.11212	0.648254	1.10112	0.775535	0.516305	1.07238	0.573065	0.378453	0.524501	0.59733	0	0.60449	1.57624	1.6475	0.445056	0.647392	0.333399	0.520714	0.851589	1.02244	0.775487	1.14125
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062123 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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