|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062122 ID=TCONS_00062122|Name=TCONS_00062122|organism=Clytia hemisphaerica|type=transcript|length=1351bp
ATAAAACCTATATAAAAATCTGATATTTTCTGAGACTATAATTTAATATT
CACATTTGCTATATATAAATACCTCCTTCTCCTATATTATACCCTACAAT
ACCAGTAAAAATTCCCCCGCCATAATTTGTTCTCATCGCAAATTGCAACA
GGTCTTTCTTATAGCAGTTAGCTAAGACCAAAATTTAATGACAGGCGGAA
ACCACAATCTAACAGTCTtgtcaatttattttttcatactcGTAAATTTG
TTtgtactttgaaatttttcgatGCCCTTTTACTATCATCAATAACAAAG
AAGAGAGTTCAACGATTTCAAATATCTTACAAAACGTTTGcatatataaa
taaataataaaaatatttgaatatttccaATCCCTCAAGCGGTCATTCTC
ATAACTTTCATTTCTACCCATGCTTGAGTTCTGTAAAACAGCAAGGAAGA
CCAATCTACTTTGCTTGCCGCCTTTCCATTCTCACGTGTGTCGTAAAACC
CGTTCAGATTGGATTCTGCGCATGCGTTATACCACCATGCTCCATGCAAG
TCACGTGCACAATTTTTGGTCGCATGGCGGTCATTATCTCGATCAAAGGT
CGAGAATTCCATGTTGTCATGGTAACTCAACGAATCACCATTCCCAAAAC
TATATTTAATGTGAAGTTTGTAGTTTGCCGCCTCGCTATCTATGGCAAAG
TGTTTGTAAAATGCCATATATTTCAAGTCCCAGGAATGTGGTGATTTCAT
AGTGATTTTTAGTTCTGAGCCTTTTGGATATAACGCTTGTGTACTCAGTG
CGTATAGATTCTCGTTGCCTATCCAAAATTCGCCTTGAAGTTTCCCGAAA
CCTTGCTTGTACTGCTCCCATGAACGATAGAAATTGGTGCTTCCGTCCAT
ACGTCGTTGTATCACCGTCCAACCGTTGCCGTCGCAGAATACATTTGTGC
TCCGTAAGCCGTCCATTGTAACAGTGTAGATTCCGGCCACGTAGTTGCCC
TTGAGGTAGAATTCTTTACAATCTCGTTTCGGTGGTAAAGCACGACAATC
ACAATAGTGCCGGTCAGGTATCGTCAAATCTTCCAAACATTGACATTTTC
CGCATTTATTTTGAGCGCAATAACCTAAAGGTTTCTTTTCACGCTCTTTT
AAGTCTGTAATTTCTTTCTGAAGTTTTAACACCATCCTCTTAAGGTCATC
GTTTGAAATAACAACTGCTGCAGTAGAAACCTGGGTAAATTGGAAGAGCA
ACCATGCtccaaaatttattaaaatccaTGTTTGCATCATCCTTCCTACG
TTTCCAATGAATCCGTACTGATCGGATTAAAATGTAATTGATCTTTTCTC
t Run BLAST on NCBI protein sequence of TCONS_00062122-protein >TCONS_00062122-protein ID=TCONS_00062122-protein|Name=TCONS_00062122-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MMQTWILINFGAWLLFQFTQVSTAAVVISNDDLKRMVLKLQKEITDLKER
EKKPLGYCAQNKCGKCQCLEDLTIPDRHYCDCRALPPKRDCKEFYLKGNY
VAGIYTVTMDGLRSTNVFCDGNGWTVIQRRMDGSTNFYRSWEQYKQGFGK
LQGEFWIGNENLYALSTQALYPKGSELKITMKSPHSWDLKYMAFYKHFAI
DSEAANYKLHIKYSFGNGDSLSYHDNMEFSTFDRDNDRHATKNCARDLHG
AWWYNACAESNLNGFYDTRENGKAASKVDWSSLLFYRTQAWVEMKVMRMT
A Run BLAST on NCBI transcript from alignment at scaffold_361:1127848..1129198 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062122 ID=TCONS_00062122|Name=TCONS_00062122|organism=Clytia hemisphaerica|type=transcript|length=1351bp|location=Sequence derived from alignment at scaffold_361:1127848..1129198 (Clytia hemisphaerica)
aGAGAAAAGATCAATTACATTTTAATCCGATCAGTACGGATTCATTGGAA
ACGTAGGAAGGATGATGCAAACAtggattttaataaattttggaGCATGG
TTGCTCTTCCAATTTACCCAGGTTTCTACTGCAGCAGTTGTTATTTCAAA
CGATGACCTTAAGAGGATGGTGTTAAAACTTCAGAAAGAAATTACAGACT
TAAAAGAGCGTGAAAAGAAACCTTTAGGTTATTGCGCTCAAAATAAATGC
GGAAAATGTCAATGTTTGGAAGATTTGACGATACCTGACCGGCACTATTG
TGATTGTCGTGCTTTACCACCGAAACGAGATTGTAAAGAATTCTACCTCA
AGGGCAACTACGTGGCCGGAATCTACACTGTTACAATGGACGGCTTACGG
AGCACAAATGTATTCTGCGACGGCAACGGTTGGACGGTGATACAACGACG
TATGGACGGAAGCACCAATTTCTATCGTTCATGGGAGCAGTACAAGCAAG
GTTTCGGGAAACTTCAAGGCGAATTTTGGATAGGCAACGAGAATCTATAC
GCACTGAGTACACAAGCGTTATATCCAAAAGGCTCAGAACTAAAAATCAC
TATGAAATCACCACATTCCTGGGACTTGAAATATATGGCATTTTACAAAC
ACTTTGCCATAGATAGCGAGGCGGCAAACTACAAACTTCACATTAAATAT
AGTTTTGGGAATGGTGATTCGTTGAGTTACCATGACAACATGGAATTCTC
GACCTTTGATCGAGATAATGACCGCCATGCGACCAAAAATTGTGCACGTG
ACTTGCATGGAGCATGGTGGTATAACGCATGCGCAGAATCCAATCTGAAC
GGGTTTTACGACACACGTGAGAATGGAAAGGCGGCAAGCAAAGTAGATTG
GTCTTCCTTGCTGTTTTACAGAACTCAAGCATGGGTAGAAATGAAAGTTA
TGAGAATGACCGCTTGAGGGATtggaaatattcaaatatttttattattt
atttatatatgCAAACGTTTTGTAAGATATTTGAAATCGTTGAACTCTCT
TCTTTGTTATTGATGATAGTAAAAGGGCatcgaaaaatttcaaagtacaA
ACAAATTTACgagtatgaaaaaataaattgacaAGACTGTTAGATTGTGG
TTTCCGCCTGTCATTAAATTTTGGTCTTAGCTAACTGCTATAAGAAAGAC
CTGTTGCAATTTGCGATGAGAACAAATTATGGCGGGGGAATTTTTACTGG
TATTGTAGGGTATAATATAGGAGAAGGAGGTATTTATATATAGCAAATGT
GAATATTAAATTATAGTCTCAGAAAATATCAGATTTTTATATAGGTTTTA
T Coding sequence (CDS) from alignment at scaffold_361:1127848..1129198 >TCONS_00062122 ID=TCONS_00062122|Name=TCONS_00062122|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at scaffold_361:1127848..1129198 (Clytia hemisphaerica)
ATGATGCAAACAtggattttaataaattttggaGCATGGTTGCTCTTCCA
ATTTACCCAGGTTTCTACTGCAGCAGTTGTTATTTCAAACGATGACCTTA
AGAGGATGGTGTTAAAACTTCAGAAAGAAATTACAGACTTAAAAGAGCGT
GAAAAGAAACCTTTAGGTTATTGCGCTCAAAATAAATGCGGAAAATGTCA
ATGTTTGGAAGATTTGACGATACCTGACCGGCACTATTGTGATTGTCGTG
CTTTACCACCGAAACGAGATTGTAAAGAATTCTACCTCAAGGGCAACTAC
GTGGCCGGAATCTACACTGTTACAATGGACGGCTTACGGAGCACAAATGT
ATTCTGCGACGGCAACGGTTGGACGGTGATACAACGACGTATGGACGGAA
GCACCAATTTCTATCGTTCATGGGAGCAGTACAAGCAAGGTTTCGGGAAA
CTTCAAGGCGAATTTTGGATAGGCAACGAGAATCTATACGCACTGAGTAC
ACAAGCGTTATATCCAAAAGGCTCAGAACTAAAAATCACTATGAAATCAC
CACATTCCTGGGACTTGAAATATATGGCATTTTACAAACACTTTGCCATA
GATAGCGAGGCGGCAAACTACAAACTTCACATTAAATATAGTTTTGGGAA
TGGTGATTCGTTGAGTTACCATGACAACATGGAATTCTCGACCTTTGATC
GAGATAATGACCGCCATGCGACCAAAAATTGTGCACGTGACTTGCATGGA
GCATGGTGGTATAACGCATGCGCAGAATCCAATCTGAACGGGTTTTACGA
CACACGTGAGAATGGAAAGGCGGCAAGCAAAGTAGATTGGTCTTCCTTGC
TGTTTTACAGAACTCAAGCATGGGTAGAAATGAAAGTTATGAGAATGACC
GCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062122-exon-scaffold_361-1491911889:1127848..1129198 | TCONS_00062122-exon-scaffold_361-1491911889:1127848..1129198 | Clytia hemisphaerica | exon |
| TCONS_00062122-exon-scaffold_361-1510915933:1127848..1129198 | TCONS_00062122-exon-scaffold_361-1510915933:1127848..1129198 | Clytia hemisphaerica | exon |
| TCONS_00062122-exon-scaffold_361-1575043694:1127848..1129198 | TCONS_00062122-exon-scaffold_361-1575043694:1127848..1129198 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1127848..1129198 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00062122 vs. Swiss-Prot (Human)
Match: FCN1 (Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 5.000e-43 Identity = 92/218 (42.20%), Postives = 126/218 (57.80%), Query Frame = -2
Query: 403 RDCKEFYLKGNYVAGIYTVTMDGLRSTNVFCD----GNGWTVIQRRMDGSTNFYRSWEQYKQGFGKLQGEFWIGNENLYALSTQALYPKGSELKITM---KSPHSWDLKYMAFYKHFAIDSEAANYKLHIKYSFGN--GDSLSYHDNMEFSTFDRDNDRHATKNCARDLHGAWWYNACAESNLNGFYDTRENGKAASKVDWSSLLFYRTQAWV-EMKV 1026
R+CK+ +G +++G +T+ + R V CD G GWTV QRRMDGS +FYR W YKQGFG GEFW+GN+N++AL+ Q SEL++ + + H + A YK F + EA YKL + G G+SL+ H+N FST D+DND ++ NCA GAWWY C SNLNG Y + A+ ++WS+ Y+ V EMKV
Sbjct: 116 RNCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTAQG----SSELRVDLVDFEGNHQF-----AKYKSFKVADEAEKYKLVLGAFVGGSAGNSLTGHNNNFFSTKDQDNDV-SSSNCAEKFQGAWWYADCHASNLNGLYLMGPHESYANGINWSAAKGYKYSYKVSEMKV 323
The following BLAST results are available for this feature:
|
