TCONS_00062120 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062120
Unique NameTCONS_00062120
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062120 ID=TCONS_00062120|Name=TCONS_00062120|organism=Clytia hemisphaerica|type=transcript|length=273bp
ATCGAAAGACTCTCTATAAATATATCCAATCCTGATTGGACCTCCTACAC
TCCCCAATCCCTTTTTTAAACGATTACCATGATTCTGCTCACTCTTATCC
TAAAATTTGAGGGATCTAGCTACTGTGTTCTACCTACCCCCTAATTCCCA
TTCAATTCTGgcacaaaaaatgaaacttgaAATTGAATGTCTTGGATTTT
CTGTCCCAGTGTTTCCAGAATTTCTTCCTTCAACAGACGAATCATATCTA
AAAAATGACCAGGCTCTTGTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_361:939465..939737

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062120 ID=TCONS_00062120|Name=TCONS_00062120|organism=Clytia hemisphaerica|type=transcript|length=273bp|location=Sequence derived from alignment at scaffold_361:939465..939737 (Clytia hemisphaerica)
CAAACAAGAGCCTGGTCATTTTTTAGATATGATTCGTCTGTTGAAGGAAG
AAATTCTGGAAACACTGGGACAGAAAATCCAAGACATTCAATTtcaagtt
tcattttttgtgcCAGAATTGAATGGGAATTAGGGGGTAGGTAGAACACA
GTAGCTAGATCCCTCAAATTTTAGGATAAGAGTGAGCAGAATCATGGTAA
TCGTTTAAAAAAGGGATTGGGGAGTGTAGGAGGTCCAATCAGGATTGGAT
ATATTTATAGAGAGTCTTTCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038943XLOC_038943Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062120-exon-scaffold_361-1491911889:939465..939737TCONS_00062120-exon-scaffold_361-1491911889:939465..939737Clytia hemisphaericaexon
TCONS_00062120-exon-scaffold_361-1510915933:939465..939737TCONS_00062120-exon-scaffold_361-1510915933:939465..939737Clytia hemisphaericaexon
TCONS_00062120-exon-scaffold_361-1575043694:939465..939737TCONS_00062120-exon-scaffold_361-1575043694:939465..939737Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:939465..939737 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.89004	5.2984	6.76714	6.01872	2.19816	5.21105	2.79418	2.61588	3.66288	3.4028	9.35805	8.68463	2.16814	4.128	2.77672	1.98657	2.85517	1.2542	2.8879	1.20879	2.62665	3.07485	1.24596	2.26552	9.33372	7.80949	3.72512	1.59022	0	2.4577
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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