TCONS_00062116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062116
Unique NameTCONS_00062116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062116 ID=TCONS_00062116|Name=TCONS_00062116|organism=Clytia hemisphaerica|type=transcript|length=494bp
CCAATGATTCCATTATGTCGCTCAACCAATCCATTGCTCCATGGGCTTTC
AGCAGCTGTAGtcttgattttgatattgagattttcacaaaaatcttgGA
ACTCTTGATTGTCGAACTCACCCCCattgtcaacaagaaacttaTTTGGG
TAACCAAAAATCTTTATCCAGATGTCAAATAACTGTCCAACGATAACTTC
TTTCTTCTTGCTCTTGATGACCGATGATGCACTGTACCGAGTTGCATGAT
CAACTAGATGCAAAAACCATGTTTTAGAGGATCCTTCTTTCCACTCCTTC
AAGTCCATAGCAACAGTTTCATTTAAGTGATCGACAAACCAACAACATGT
CTTTGGGGTGTCTTTTTGTACACTTGACATATCTTGCAAGACTCGCACAC
CTTTTTCAGAACGTCAATATTTTCTTGATCATCAACGCCAGCATCTTTCA
AAAGACTTTTGATTCGGTGATAGGGCGCATGACTAAACTGTCTG
Run BLAST on NCBI

protein sequence of TCONS_00062116-protein

>TCONS_00062116-protein ID=TCONS_00062116-protein|Name=TCONS_00062116-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MSSVQKDTPKTCCWFVDHLNETVAMDLKEWKEGSSKTWFLHLVDHATRYS
ASSVIKSKKKEVIVGQLFDIWIKIFGYPNKFLVDNGGEFDNQEFQDFCEN
LNIKIKTTAAESPWSNGLVERHNGII
Run BLAST on NCBI

transcript from alignment at scaffold_361:926871..927364

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062116 ID=TCONS_00062116|Name=TCONS_00062116|organism=Clytia hemisphaerica|type=transcript|length=494bp|location=Sequence derived from alignment at scaffold_361:926871..927364 (Clytia hemisphaerica)
CAGACAGTTTAGTCATGCGCCCTATCACCGAATCAAAAGTCTTTTGAAAG
ATGCTGGCGTTGATGATCAAGAAAATATTGACGTTCTGAAAAAGGTGTGC
GAGTCTTGCAAGATATGTCAAGTGTACAAAAAGACACCCCAAAGACATGT
TGTTGGTTTGTCGATCACTTAAATGAAACTGTTGCTATGGACTTGAAGGA
GTGGAAAGAAGGATCCTCTAAAACATGGTTTTTGCATCTAGTTGATCATG
CAACTCGGTACAGTGCATCATCGGTCATCAAGAGCAAGAAGAAAGAAGTT
ATCGTTGGACAGTTATTTGACATCTGGATAAAGATTTTTGGTTACCCAAA
taagtttcttgttgacaatGGGGGTGAGTTCGACAATCAAGAGTTCcaag
atttttgtgaaaatctcaatatcaaaatcaagaCTACAGCTGCTGAAAGC
CCATGGAGCAATGGATTGGTTGAGCGACATAATGGAATCATTGG

Coding sequence (CDS) from alignment at scaffold_361:926871..927364

>TCONS_00062116 ID=TCONS_00062116|Name=TCONS_00062116|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_361:926871..927364 (Clytia hemisphaerica)
ATGTCAAGTGTACAAAAAGACACCCCAAAGACATGTTGTTGGTTTGTCGA
TCACTTAAATGAAACTGTTGCTATGGACTTGAAGGAGTGGAAAGAAGGAT
CCTCTAAAACATGGTTTTTGCATCTAGTTGATCATGCAACTCGGTACAGT
GCATCATCGGTCATCAAGAGCAAGAAGAAAGAAGTTATCGTTGGACAGTT
ATTTGACATCTGGATAAAGATTTTTGGTTACCCAAAtaagtttcttgttg
acaatGGGGGTGAGTTCGACAATCAAGAGTTCcaagatttttgtgaaaat
ctcaatatcaaaatcaagaCTACAGCTGCTGAAAGCCCATGGAGCAATGG
ATTGGTTGAGCGACATAATGGAATCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038939XLOC_038939Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062116-proteinTCONS_00062116-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062116-exon-scaffold_361-1491911889:926871..927364TCONS_00062116-exon-scaffold_361-1491911889:926871..927364Clytia hemisphaericaexon
TCONS_00062116-exon-scaffold_361-1510915933:926871..927364TCONS_00062116-exon-scaffold_361-1510915933:926871..927364Clytia hemisphaericaexon
TCONS_00062116-exon-scaffold_361-1575043694:926871..927364TCONS_00062116-exon-scaffold_361-1575043694:926871..927364Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:926871..927364 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.61435	5.33845	7.75916	5.07013	6.62091	5.04807	7.96416	5.80614	4.28856	4.04581	5.64562	5.09746	3.77711	8.62578	1.36599	3.5284	5.16732	3.92324	3.32289	4.61151	5.39309	4.82632	0.713651	1.76461	5.50061	6.93738	3.38132	2.73071	2.63055	2.04909
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top