TCONS_00062113 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062113
Unique NameTCONS_00062113
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length399

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062113 ID=TCONS_00062113|Name=TCONS_00062113|organism=Clytia hemisphaerica|type=transcript|length=399bp
CTTTAAGTAGACATAACTGGAATGCATTCGTTTCTATCGTATCAACGACT
ATCCGAGTTGTTGGCCGACAAGCGAAAGGTTCCTCAGTCAATCGTGACGA
ATAAATTGAGAACAATTATTTGGAGCTAAACCTTAGCTCAGGTTAATTCC
AAGTCGAATGAAGTATATCCCGCCACCGCACCAAGGCGGTTATGAAATAG
TATATTTCGGCTGCCGGTTATTCTTTCCTTCGCCTATATATATATCCTAC
CGTCAAGTCCCTTTTCAGCGCAGTTCAGCTCAGTCTCAATTGATCACAAC
TTCAATCTTTCCCTCCCACCCTCTCCTTAACCCCTGTAATTTTGGTTCTG
CTTTctgcttcttccttttctttttttagttaCCAACTACGTTCTCATC
Run BLAST on NCBI

transcript from alignment at scaffold_361:863810..864208

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062113 ID=TCONS_00062113|Name=TCONS_00062113|organism=Clytia hemisphaerica|type=transcript|length=399bp|location=Sequence derived from alignment at scaffold_361:863810..864208 (Clytia hemisphaerica)
GATGAGAACGTAGTTGGtaactaaaaaaagaaaaggaagaagcagAAAGC
AGAACCAAAATTACAGGGGTTAAGGAGAGGGTGGGAGGGAAAGATTGAAG
TTGTGATCAATTGAGACTGAGCTGAACTGCGCTGAAAAGGGACTTGACGG
TAGGATATATATATAGGCGAAGGAAAGAATAACCGGCAGCCGAAATATAC
TATTTCATAACCGCCTTGGTGCGGTGGCGGGATATACTTCATTCGACTTG
GAATTAACCTGAGCTAAGGTTTAGCTCCAAATAATTGTTCTCAATTTATT
CGTCACGATTGACTGAGGAACCTTTCGCTTGTCGGCCAACAACTCGGATA
GTCGTTGATACGATAGAAACGAATGCATTCCAGTTATGTCTACTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038936XLOC_038936Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062113-exon-scaffold_361-1491911889:863810..864208TCONS_00062113-exon-scaffold_361-1491911889:863810..864208Clytia hemisphaericaexon
TCONS_00062113-exon-scaffold_361-1510915933:863810..864208TCONS_00062113-exon-scaffold_361-1510915933:863810..864208Clytia hemisphaericaexon
TCONS_00062113-exon-scaffold_361-1575043694:863810..864208TCONS_00062113-exon-scaffold_361-1575043694:863810..864208Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:863810..864208 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.71104	1.79321	0.784875	1.24105	1.00724	1.12807	0.287637	0.502664	0.15735	0.393149	0.189177	0.380564	0.132289	0.403835	0	0.405293	1.18078	0.440673	0.201929	0.423674	0.980622	1.05671	1.07048	0.452649	0.408818	1.25245	0.565374	1.12558	0.951082	2.21133
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062113 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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