TCONS_00062109 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062109
Unique NameTCONS_00062109
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length325

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062109 ID=TCONS_00062109|Name=TCONS_00062109|organism=Clytia hemisphaerica|type=transcript|length=325bp
TGCAGGTGTCTACACAAACATTTGAAGGCATTAGCATGACTTTGTTTATT
GGATAAAAGTCAACATAGTGTCTTCTCTCTGATGTATGAGAACATTGGTT
TCCAAAACGTAGACGTCACATACTGACCATCATCTAATTTAAGATGATGT
TCAATATGTGGCACTGTTTGACCGAATTGGATTTCCAATgttttttttgt
agtttaatatttttcaacttaccaagaaatttgattttgttgatggTCTC
CTTTGCACTTTGTTACCTTGGTGAAAGTATCTGCAACTTAATTGTCGTTG
TTCAGGGACCAAAAAACTTGACAac
Run BLAST on NCBI

transcript from alignment at scaffold_361:728797..729121

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062109 ID=TCONS_00062109|Name=TCONS_00062109|organism=Clytia hemisphaerica|type=transcript|length=325bp|location=Sequence derived from alignment at scaffold_361:728797..729121 (Clytia hemisphaerica)
gtTGTCAAGTTTTTTGGTCCCTGAACAACGACAATTAAGTTGCAGATACT
TTCACCAAGGTAACAAAGTGCAAAGGAGAccatcaacaaaatcaaatttc
ttggtaagttgaaaaatattaaactacaaaaaaaacATTGGAAATCCAAT
TCGGTCAAACAGTGCCACATATTGAACATCATCTTAAATTAGATGATGGT
CAGTATGTGACGTCTACGTTTTGGAAACCAATGTTCTCATACATCAGAGA
GAAGACACTATGTTGACTTTTATCCAATAAACAAAGTCATGCTAATGCCT
TCAAATGTTTGTGTAGACACCTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038932XLOC_038932Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062109-exon-scaffold_361-1491911889:728797..729121TCONS_00062109-exon-scaffold_361-1491911889:728797..729121Clytia hemisphaericaexon
TCONS_00062109-exon-scaffold_361-1510915933:728797..729121TCONS_00062109-exon-scaffold_361-1510915933:728797..729121Clytia hemisphaericaexon
TCONS_00062109-exon-scaffold_361-1575043694:728797..729121TCONS_00062109-exon-scaffold_361-1575043694:728797..729121Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:728797..729121 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.72812	6.8592	10.3881	15.5834	2.0621	0.6518	4.71821	4.04904	12.8856	15.6417	11.7739	14.8684	10.1697	14.7858	12.5033	8.57257	5.28035	8.70657	52.3407	57.1521	10.6448	8.22088	16.13	19.1276	6.56698	22.8574	12.5803	10.7409	21.7242	20.0585
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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