TCONS_00062105 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062105
Unique NameTCONS_00062105
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062105 ID=TCONS_00062105|Name=TCONS_00062105|organism=Clytia hemisphaerica|type=transcript|length=452bp
AATTGTTTTTGGTTGGCAAGCATGACAAACATAAAACAATCCAGGAAGGC
TTAATGGGTTATAAAGACTCTTAAAAGTGTCAGCATCTATTATGTCAGAA
ATATCAGTATTGTAATATGGAGAGATTGCTGCAAGGCTTAGCCAACATTG
TTTGTGTACACCTTGTCCACATACTGAACATTCAAGTAATGGATCCTCTT
CTAAACTGATTCTGTATCTTTTATCGCAGATCGAGCAGTCATCTGGtagt
agattttgaattttgcaCACAATAAGGTGAGATAAAGGTCTCTTGTTTTT
ATCGTTGAAATTTGACACTTTCAGAAAATTTGCAGTTACTTTCAGGGTAT
CGTGACGTTCTTTAAAAATATCGTTCTCAATGTCTTGTACACTTTTGCCA
TACTTATATTTTCGCAAACAGAATTTAACTGGATCAGATGAGGTATTCAA
AC
Run BLAST on NCBI

protein sequence of TCONS_00062105-protein

>TCONS_00062105-protein ID=TCONS_00062105-protein|Name=TCONS_00062105-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
LNTSSDPVKFCLRKYKYGKSVQDIENDIFKERHDTLKVTANFLKVSNFND
KNKRPLSHLIVCKIQNLLPDDCSICDKRYRISLEEDPLLECSVCGQGVHK
QCWLSLAAISPYYNTDISDIIDADTFKSLYNPLSLPGLFYVCHACQPKTI
Run BLAST on NCBI

transcript from alignment at scaffold_361:555476..555927

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062105 ID=TCONS_00062105|Name=TCONS_00062105|organism=Clytia hemisphaerica|type=transcript|length=452bp|location=Sequence derived from alignment at scaffold_361:555476..555927 (Clytia hemisphaerica)
GTTTGAATACCTCATCTGATCCAGTTAAATTCTGTTTGCGAAAATATAAG
TATGGCAAAAGTGTACAAGACATTGAGAACGATATTTTTAAAGAACGTCA
CGATACCCTGAAAGTAACTGCAAATTTTCTGAAAGTGTCAAATTTCAACG
ATAAAAACAAGAGACCTTTATCTCACCTTATTGTGtgcaaaattcaaaat
ctactaCCAGATGACTGCTCGATCTGCGATAAAAGATACAGAATCAGTTT
AGAAGAGGATCCATTACTTGAATGTTCAGTATGTGGACAAGGTGTACACA
AACAATGTTGGCTAAGCCTTGCAGCAATCTCTCCATATTACAATACTGAT
ATTTCTGACATAATAGATGCTGACACTTTTAAGAGTCTTTATAACCCATT
AAGCCTTCCTGGATTGTTTTATGTTTGTCATGCTTGCCAACCAAAAACAA
TT

Coding sequence (CDS) from alignment at scaffold_361:555476..555927

>TCONS_00062105 ID=TCONS_00062105|Name=TCONS_00062105|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_361:555476..555927 (Clytia hemisphaerica)
TTGAATACCTCATCTGATCCAGTTAAATTCTGTTTGCGAAAATATAAGTA
TGGCAAAAGTGTACAAGACATTGAGAACGATATTTTTAAAGAACGTCACG
ATACCCTGAAAGTAACTGCAAATTTTCTGAAAGTGTCAAATTTCAACGAT
AAAAACAAGAGACCTTTATCTCACCTTATTGTGtgcaaaattcaaaatct
actaCCAGATGACTGCTCGATCTGCGATAAAAGATACAGAATCAGTTTAG
AAGAGGATCCATTACTTGAATGTTCAGTATGTGGACAAGGTGTACACAAA
CAATGTTGGCTAAGCCTTGCAGCAATCTCTCCATATTACAATACTGATAT
TTCTGACATAATAGATGCTGACACTTTTAAGAGTCTTTATAACCCATTAA
GCCTTCCTGGATTGTTTTATGTTTGTCATGCTTGCCAACCAAAAACAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038928XLOC_038928Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062105-exon-scaffold_361-1491911889:555476..555927TCONS_00062105-exon-scaffold_361-1491911889:555476..555927Clytia hemisphaericaexon
TCONS_00062105-exon-scaffold_361-1510915933:555476..555927TCONS_00062105-exon-scaffold_361-1510915933:555476..555927Clytia hemisphaericaexon
TCONS_00062105-exon-scaffold_361-1575043694:555476..555927TCONS_00062105-exon-scaffold_361-1575043694:555476..555927Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062105-proteinTCONS_00062105-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:555476..555927 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.367501	0.447412	1.23587	0.638824	0.349025	0.233416	0.488155	0.97071	0.321543	0.231761	0	0.96277	0.45467	0.543703	0.0226309	0.207159	0	0.112337	0	0	0	0.16382	0.116014	0	0	0.526448	0	0.0331296	0.162047	0.223121
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062105 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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