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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062099 ID=TCONS_00062099|Name=TCONS_00062099|organism=Clytia hemisphaerica|type=transcript|length=1183bp
TGTGATTTCAGCGTgaatttgtgcaaaaaaaaaattaaggtgACAAATTC
GGAATTCcccgaaaaaatcaaataaaatttttaccaACACTTCAAGTCCT
GAACGTTTAAGGTCGTAATAATCTTCTCGTTGCGttctttttagatttct
caCTGGAAAAGTTTCTAATGTTTGATTTATGGTACTACAGTATACAATTT
AACTTCAACATTGTTAAAATGGTGTTGCAAAATGTAACTACGATGTTCAA
TTAATGAAAAGTCCAGTTCTTTATGAATTGATATATCAAACCCCAGTTTT
CAATTTTACCGAAAGAAAAACAATCGAATCTCCAATTTCATTCCACGTGA
CATGTAAACCTTGCCGAAAAAGTGTCATTTTCTTACGTCAAATGTTTCAA
AATACCCTCAACTTTAGAACGCCATCCCTCAACTCCACGTGTAACATTGA
CAAAGTGATGGTCTTAAGAACCGTCACATAATTGAATGATGAATGTAGGC
CAACCAAATTGACTCGATCTTCCCAAATCTCTGGTCATACTTCTCCTGAT
TTTGAAAGGCTCTCCTTCAAACCAACTTTTGTGCGATTTCAAACCTGAGA
ATAAGCTTATCTTTCCTGGTAAATTTCTTTAGAAAATCCGAATCACATTT
GATCgcgtttttcatttgttttctaaCAGGAGTTTCGCCGTATGCAAAAA
TGTTCGTTTCTCCGTTACTCAGATCATTATTGCTTCTCGAAAAATCAATC
GATTTCGTTCCCAGGGTAGCATCCTTTTGAAACCAATTCGTGTAGTCCCA
TCCAGGGTCTTCAACCACAActcgaaaattgattttgattttggaaaagC
ATCGTAGAGTTATAAACATGAGAGGTTTCGATAGTTCAAAATCGAAGCCA
ATGATTAGTTTCCCTTGAAGAAGAATGTCGTTTTCGATTTTCCAAAAGTC
ACTACTACATTCTTTGCCAGTCGATAAACAGAGTTCGTGAAAATCATCGA
TATACATATGGAAAACTTTCATGGTTGAGTCTTCAGAAGTGAAGTCTGTC
TGATTTTCTTGTCTTTCCTCCTTTACCATTTTGATGtgattttcctgttt
tttttatCTACTATGAAAAAAGATTGTATACATTTAAAAATACTCTCATT
AACATGATATGAAAGCTGCAatctttttcattg Run BLAST on NCBI protein sequence of TCONS_00062099-protein >TCONS_00062099-protein ID=TCONS_00062099-protein|Name=TCONS_00062099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
MVKEERQENQTDFTSEDSTMKVFHMYIDDFHELCLSTGKECSSDFWKIEN
DILLQGKLIIGFDFELSKPLMFITLRCFSKIKINFRVVVEDPGWDYTNWF
QKDATLGTKSIDFSRSNNDLSNGETNIFAYGETPVRKQMKNAIKCDSDFL
KKFTRKDKLILRFEIAQKLV Run BLAST on NCBI transcript from alignment at scaffold_361:444512..445694 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062099 ID=TCONS_00062099|Name=TCONS_00062099|organism=Clytia hemisphaerica|type=transcript|length=1183bp|location=Sequence derived from alignment at scaffold_361:444512..445694 (Clytia hemisphaerica)
caatgaaaaagatTGCAGCTTTCATATCATGTTAATGAGAGTATTTTTAA
ATGTATACAATCTTTTTTCATAGTAGataaaaaaaacaggaaaatcaCAT
CAAAATGGTAAAGGAGGAAAGACAAGAAAATCAGACAGACTTCACTTCTG
AAGACTCAACCATGAAAGTTTTCCATATGTATATCGATGATTTTCACGAA
CTCTGTTTATCGACTGGCAAAGAATGTAGTAGTGACTTTTGGAAAATCGA
AAACGACATTCTTCTTCAAGGGAAACTAATCATTGGCTTCGATTTTGAAC
TATCGAAACCTCTCATGTTTATAACTCTACGATGcttttccaaaatcaaa
atcaattttcgagTTGTGGTTGAAGACCCTGGATGGGACTACACGAATTG
GTTTCAAAAGGATGCTACCCTGGGAACGAAATCGATTGATTTTTCGAGAA
GCAATAATGATCTGAGTAACGGAGAAACGAACATTTTTGCATACGGCGAA
ACTCCTGttagaaaacaaatgaaaaacgcGATCAAATGTGATTCGGATTT
TCTAAAGAAATTTACCAGGAAAGATAAGCTTATTCTCAGGTTTGAAATCG
CACAAAAGTTGGTTTGAAGGAGAGCCTTTCAAAATCAGGAGAAGTATGAC
CAGAGATTTGGGAAGATCGAGTCAATTTGGTTGGCCTACATTCATCATTC
AATTATGTGACGGTTCTTAAGACCATCACTTTGTCAATGTTACACGTGGA
GTTGAGGGATGGCGTTCTAAAGTTGAGGGTATTTTGAAACATTTGACGTA
AGAAAATGACACTTTTTCGGCAAGGTTTACATGTCACGTGGAATGAAATT
GGAGATTCGATTGTTTTTCTTTCGGTAAAATTGAAAACTGGGGTTTGATA
TATCAATTCATAAAGAACTGGACTTTTCATTAATTGAACATCGTAGTTAC
ATTTTGCAACACCATTTTAACAATGTTGAAGTTAAATTGTATACTGTAGT
ACCATAAATCAAACATTAGAAACTTTTCCAGtgagaaatctaaaaagaaC
GCAACGAGAAGATTATTACGACCTTAAACGTTCAGGACTTGAAGTGTtgg
taaaaattttatttgattttttcgggGAATTCCGAATTTGTcaccttaat
tttttttttgcacaaattcACGCTGAAATCACA Coding sequence (CDS) from alignment at scaffold_361:444512..445694 >TCONS_00062099 ID=TCONS_00062099|Name=TCONS_00062099|organism=Clytia hemisphaerica|type=CDS|length=513bp|location=Sequence derived from alignment at scaffold_361:444512..445694 (Clytia hemisphaerica)
ATGGTAAAGGAGGAAAGACAAGAAAATCAGACAGACTTCACTTCTGAAGA
CTCAACCATGAAAGTTTTCCATATGTATATCGATGATTTTCACGAACTCT
GTTTATCGACTGGCAAAGAATGTAGTAGTGACTTTTGGAAAATCGAAAAC
GACATTCTTCTTCAAGGGAAACTAATCATTGGCTTCGATTTTGAACTATC
GAAACCTCTCATGTTTATAACTCTACGATGcttttccaaaatcaaaatca
attttcgagTTGTGGTTGAAGACCCTGGATGGGACTACACGAATTGGTTT
CAAAAGGATGCTACCCTGGGAACGAAATCGATTGATTTTTCGAGAAGCAA
TAATGATCTGAGTAACGGAGAAACGAACATTTTTGCATACGGCGAAACTC
CTGttagaaaacaaatgaaaaacgcGATCAAATGTGATTCGGATTTTCTA
AAGAAATTTACCAGGAAAGATAAGCTTATTCTCAGGTTTGAAATCGCACA
AAAGTTGGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062099-exon-scaffold_361-1491911889:444512..445694 | TCONS_00062099-exon-scaffold_361-1491911889:444512..445694 | Clytia hemisphaerica | exon |
| TCONS_00062099-exon-scaffold_361-1510915933:444512..445694 | TCONS_00062099-exon-scaffold_361-1510915933:444512..445694 | Clytia hemisphaerica | exon |
| TCONS_00062099-exon-scaffold_361-1575043694:444512..445694 | TCONS_00062099-exon-scaffold_361-1575043694:444512..445694 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:444512..445694 . |
Blast
The following BLAST results are available for this feature:
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