TCONS_00062084 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062084
Unique NameTCONS_00062084
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length595

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062084 ID=TCONS_00062084|Name=TCONS_00062084|organism=Clytia hemisphaerica|type=transcript|length=595bp
CTGGCTTTCGATGCAGGAGATTTGAGGTTCAGTTAACAGGATCGTCTTAA
CGTTAATAGTGTCATTTCCTGAAACACGAGGAAGGTAGATTTTGGTTTGT
GCCATACTTGCCATCATGTTACCTGTAATGTTTTCCATTATTTCTGGCGA
TGAGGGTGATGAAAGCTTTCGATTATCTCGGATTAATTTTAACAAGCTGG
TCAACCATTGTCCAAAGTTTTCATCGAAAGAAATGACAAAGTCCTGACTC
TTTGTGTTCAGATTTAAGCAAGGATGTTGCTTCATTTTGTTCAAGTCACT
TGAAGCCGGTAAGACGAGAACTCCAACAATGTTAAACTGTTCATTTTGGA
GAATCTGCCTGTGAACATAACACCATGTTTTCAAGACTGCATTAACTTTC
GCCAAATCATTGTCAAGATGTTTTTCGTTTTCACCGATCACATAAACAAA
CATCAAGCTATGATTGGGATAAATACAAACGATTGTGTTGTCATAGTAAT
CAGGGCACTCAGAAAAATGCAGAACACTCTCGATCTTTTCATCATTGAGT
CCAAGTATTCTGAGATGGCTTATGGGATTATATCCGACGAGAATT
Run BLAST on NCBI

protein sequence of TCONS_00062084-protein

>TCONS_00062084-protein ID=TCONS_00062084-protein|Name=TCONS_00062084-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
ILVGYNPISHLRILGLNDEKIESVLHFSECPDYYDNTIVCIYPNHSLMFV
YVIGENEKHLDNDLAKVNAVLKTWCYVHRQILQNEQFNIVGVLVLPASSD
LNKMKQHPCLNLNTKSQDFVISFDENFGQWLTSLLKLIRDNRKLSSPSSP
EIMENITGNMMASMAQTKIYLPRVSGNDTINVKTILLTEPQISCIESQ
Run BLAST on NCBI

transcript from alignment at scaffold_361:25545..26139

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062084 ID=TCONS_00062084|Name=TCONS_00062084|organism=Clytia hemisphaerica|type=transcript|length=595bp|location=Sequence derived from alignment at scaffold_361:25545..26139 (Clytia hemisphaerica)
AATTCTCGTCGGATATAATCCCATAAGCCATCTCAGAATACTTGGACTCA
ATGATGAAAAGATCGAGAGTGTTCTGCATTTTTCTGAGTGCCCTGATTAC
TATGACAACACAATCGTTTGTATTTATCCCAATCATAGCTTGATGTTTGT
TTATGTGATCGGTGAAAACGAAAAACATCTTGACAATGATTTGGCGAAAG
TTAATGCAGTCTTGAAAACATGGTGTTATGTTCACAGGCAGATTCTCCAA
AATGAACAGTTTAACATTGTTGGAGTTCTCGTCTTACCGGCTTCAAGTGA
CTTGAACAAAATGAAGCAACATCCTTGCTTAAATCTGAACACAAAGAGTC
AGGACTTTGTCATTTCTTTCGATGAAAACTTTGGACAATGGTTGACCAGC
TTGTTAAAATTAATCCGAGATAATCGAAAGCTTTCATCACCCTCATCGCC
AGAAATAATGGAAAACATTACAGGTAACATGATGGCAAGTATGGCACAAA
CCAAAATCTACCTTCCTCGTGTTTCAGGAAATGACACTATTAACGTTAAG
ACGATCCTGTTAACTGAACCTCAAATCTCCTGCATCGAAAGCCAG

Coding sequence (CDS) from alignment at scaffold_361:25545..26139

>TCONS_00062084 ID=TCONS_00062084|Name=TCONS_00062084|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_361:25545..26139 (Clytia hemisphaerica)
ATTCTCGTCGGATATAATCCCATAAGCCATCTCAGAATACTTGGACTCAA
TGATGAAAAGATCGAGAGTGTTCTGCATTTTTCTGAGTGCCCTGATTACT
ATGACAACACAATCGTTTGTATTTATCCCAATCATAGCTTGATGTTTGTT
TATGTGATCGGTGAAAACGAAAAACATCTTGACAATGATTTGGCGAAAGT
TAATGCAGTCTTGAAAACATGGTGTTATGTTCACAGGCAGATTCTCCAAA
ATGAACAGTTTAACATTGTTGGAGTTCTCGTCTTACCGGCTTCAAGTGAC
TTGAACAAAATGAAGCAACATCCTTGCTTAAATCTGAACACAAAGAGTCA
GGACTTTGTCATTTCTTTCGATGAAAACTTTGGACAATGGTTGACCAGCT
TGTTAAAATTAATCCGAGATAATCGAAAGCTTTCATCACCCTCATCGCCA
GAAATAATGGAAAACATTACAGGTAACATGATGGCAAGTATGGCACAAAC
CAAAATCTACCTTCCTCGTGTTTCAGGAAATGACACTATTAACGTTAAGA
CGATCCTGTTAACTGAACCTCAAATCTCCTGCATCGAAAGCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038907XLOC_038907Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062084-exon-scaffold_361-1491911889:25545..26139TCONS_00062084-exon-scaffold_361-1491911889:25545..26139Clytia hemisphaericaexon
TCONS_00062084-exon-scaffold_361-1510915933:25545..26139TCONS_00062084-exon-scaffold_361-1510915933:25545..26139Clytia hemisphaericaexon
TCONS_00062084-exon-scaffold_361-1575043694:25545..26139TCONS_00062084-exon-scaffold_361-1575043694:25545..26139Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062084-proteinTCONS_00062084-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:25545..26139 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.312685	0.255666	0	0.739068	1.28022	0.932868	1.08474	0.782139	1.01953	0.257991	0.443721	2.77931	1.79363	1.53847	1.89107	1.0253	2.59136	2.40664	5.21771	3.22483	3.9496	2.78238	2.98536	2.35989	2.00405	12.2809	7.21782	4.20182	4.10564
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062084 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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