TCONS_00062073 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062073
Unique NameTCONS_00062073
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062073 ID=TCONS_00062073|Name=TCONS_00062073|organism=Clytia hemisphaerica|type=transcript|length=457bp
CTTCTTTTTCGTTGTCCTCATTTTGTAGTATTCCCCTTGTAATTTCTTCT
GTTGGTTGGGTAACTTCTTTTCTTTCATCTCTGTCTACTTTTTCTTCAGG
CTCTTCGTCGAGTTTTTCCATTGCTTGCAGTTGTTCGTTTGTCGTCTCCG
CAGATCCTGTATTTTCTTCGTGCTCGCTTGTCAGTCTTTCTTTTACGCCC
TCTTCAGATTCTGGTTCTTCTTTTACATCATCTGTCATATTTGGTTTCTC
GTGTACACCTTCATCAGTTTCGATAGAATTATTTTGCGAAGTGTCGATTG
AGTATATTGAGAAAGCAACCACCACAATGTTGTTTGTGGATTTGCTGACC
GGTCCGTATTTTACATCTCGTTTGTAGATATAATAATCAATGCGATGAAA
ATCTCCATCAGTGTTATAGATGAAAGATGACCTGTTCTCCTTTTCACCGT
CTACAAT
Run BLAST on NCBI

transcript from alignment at scaffold_361:1663818..1664454-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062073 ID=TCONS_00062073|Name=TCONS_00062073|organism=Clytia hemisphaerica|type=transcript|length=637bp|location=Sequence derived from alignment at scaffold_361:1663818..1664454- (Clytia hemisphaerica)
CTTCTTTTTCGTTGTCCTCATTTTGTAGTATTCCCCTTGTAATTTCTTCT
GTTGGTTGGGTAACTTCTTTTCTTTCATCTCTGTCTACTTTTTCTTCAGG
CTCTTCGTCGAGTTTTTCCATTGCTTGCAGTTGTTCGTTTGTCGTCTCCG
CAGATCCTGTATTTTCTTCGTGCTCGCTTGTCAGTCTTTCTTTTACGCCC
TCTTCAGATTCTGGTTCTTCTTTTACGCCCTCTTCAGACTCTGGTCCTTC
TTTAACACCTTCTTCAGATTCTGGTCCTTCTTTTAAACCCTCTTCAGATT
CTGGTCCTTCTTTTACGCCCTCTTCGGATTCCGGTACTTCTTTTATGCCC
TCTACGGATTCTGGTCCTTCTTTTCCACCCTCTACAGATTCCGGTCCTTC
TTTTAGATCATCTGTCATATTTGGTTTCTCGTGTACACCTTCATCAGTTT
CGATAGAATTATTTTGCGAAGTGTCGATTGAGTATATTGAGAAAGCAACC
ACCACAATGTTGTTTGTGGATTTGCTGACCGGTCCGTATTTTACATCTCG
TTTGTAGATATAATAATCAATGCGATGAAAATCTCCATCAGTGTTATAGA
TGAAAGATGACCTGTTCTCCTTTTCACCGTCTACAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038901XLOC_038901Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062073-exon-scaffold_361-1575043694:1664229..1664454TCONS_00062073-exon-scaffold_361-1575043694:1664229..1664454Clytia hemisphaericaexon
TCONS_00062073-exon-scaffold_361-1575043694:1663818..1664048TCONS_00062073-exon-scaffold_361-1575043694:1663818..1664048Clytia hemisphaericaexon
TCONS_00062073-exon-scaffold_361-1510915933:1664229..1664454TCONS_00062073-exon-scaffold_361-1510915933:1664229..1664454Clytia hemisphaericaexon
TCONS_00062073-exon-scaffold_361-1510915933:1663818..1664048TCONS_00062073-exon-scaffold_361-1510915933:1663818..1664048Clytia hemisphaericaexon
TCONS_00062073-exon-scaffold_361-1491911889:1664229..1664454TCONS_00062073-exon-scaffold_361-1491911889:1664229..1664454Clytia hemisphaericaexon
TCONS_00062073-exon-scaffold_361-1491911889:1663818..1664048TCONS_00062073-exon-scaffold_361-1491911889:1663818..1664048Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1663818..1664454 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0573836	0	0	0.0512162	0	0.088831	0	0.0798899	0.65575	1.66906	0.0812316	0	0	0.493923	1.36045	0.516163	2.26945	2.24296	11.3484	15.2283	3.41558	4.02223	0.22283	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062073 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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