|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062068 ID=TCONS_00062068|Name=TCONS_00062068|organism=Clytia hemisphaerica|type=transcript|length=2804bpRun BLAST on NCBI transcript from alignment at scaffold_361:1573920..1582766- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062068 ID=TCONS_00062068|Name=TCONS_00062068|organism=Clytia hemisphaerica|type=transcript|length=8847bp|location=Sequence derived from alignment at scaffold_361:1573920..1582766- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00062068 vs. Swiss-Prot (Human)
Match: HPSE (Heparanase OS=Homo sapiens GN=HPSE PE=1 SV=2) HSP 1 Score: 213.001 bits (541), Expect = 3.397e-59 Identity = 180/530 (33.96%), Postives = 267/530 (50.38%), Query Frame = 2
Query: 1325 VPELEHNHEEVIISFEAELPKCRLDDRFLSFSLDALELKRNLRCFP-----LESRKINTLARALSPAYFRVGGTPQDFLIFTEKKKIHAVENDQGPS----------SCHPMFENWTRM---------------KQFQ---YTHSEFEELFTFTQRNNFRLIFGLNALTRDRKGSWVISNATKAVLNKYSGK---VDWEIGNEPNRFSKYGGKTKVSARQLARDDKKLRGLLKNS---KSKIYGPDIXXXXXXXXXXXXXXXXXXXP-IDAVTYHMYEMHQTEASVEAFLNPIYMSKLKEQMSWIDQIVQNSSRGNLSRQKDVWVGETXXXXXXXXXXFSDRFISGFHHLSKIGLASEFCHKVFIRQSFYG-GHYGMLDPITHNPLPDYWVTLLFKQLIKNVVLSSS--ANQNSFFRTHFYCS-----KMVAGDVVVSFVNMKQRSNFFLSVKNYEKYPIEKYIF--TNPEGLTSKNSYLNGELLRMISGERLPQMKGVDGVRQP---VEIPRLSYGFLVFKNTNVKACM 2755
+P + V + F + P + FLS ++DA NL P L S K+ TLAR LSPAY R GGT DFLIF KK+ E S S P E R+ K+F+ Y+ S + L+TF + LIFGLNAL R W SNA + +L+ S K + WE+GNEPN F K ++ QL D +L LL+ S +K+YGPD+ +P K K LK +L A ID+VT+H Y ++ A+ E FLNP + + + Q+V+++ G K VW+GET SA GGGAP SD F +GF L K+GL++ +V +RQ F+G G+Y ++D +PLPDYW++LLFK+L+ VL +S ++ R + +C+ + GD+ + +N+ + + + ++KY+ P GL SK+ LNG L+M+ + LP + ++ +P + +P SY F V +N V AC+
Sbjct: 29 LPRPAQAQDVVDLDFFTQEPLHLVSPSFLSVTIDA-----NLATDPRFLILLGSPKLRTLARGLSPAYLRFGGTKTDFLIFDPKKESTFEERSYWQSQVNQDICKYGSIPPDVEEKLRLEWPYQEQLLLREHYQKKFKNSTYSRSSVDVLYTFANCSGLDLIFGLNALLRTADLQWNSSNA-QLLLDYCSSKGYNISWELGNEPNSFLK-KADIFINGSQLGEDFIQLHKLLRKSTFKNAKLYGPDVGQPRRKTAKMLKSFLKAGGEVIDSVTWHHYYLNGRTATKEDFLNPDVLDIFISSVQKVFQVVESTRPG-----KKVWLGETSSAYGGGAPLLSDTFAAGFMWLDKLGLSARMGIEVVMRQVFFGAGNYHLVDE-NFDPLPDYWLSLLFKKLVGTKVLMASVQGSKRRKLRVYLHCTNTDNPRYKEGDLTLYAINLHNVTKYLRLPYPFSNKQVDKYLLRPLGPHGLLSKSVQLNGLTLKMVDDQTLPPL--MEKPLRPGSSLGLPAFSYSFFVIRNAKVAACI 543 The following BLAST results are available for this feature:
BLAST of TCONS_00062068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.