TCONS_00062060 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062060
Unique NameTCONS_00062060
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1835

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062060 ID=TCONS_00062060|Name=TCONS_00062060|organism=Clytia hemisphaerica|type=transcript|length=1835bp
ttttatttatttatttagaaaattaaaaaaaaattgtaataaaatgGATT
TGAATTTAAATGTGTTGGAAGGCTTGAAACTTGTTGGAGACATTGTAAAT
GTTCCTGATAAACCGTTTGAATCACTTGTTAACTTGACATACTCATGTCT
ATCAAACAAAGAACCAATAGAGCCCAATGAGTTTAATTCTCTACAGGGAG
TAGACTCGTCTGTTGCAAAACAAGCTTTCTATGGATTGAACACATTGATT
GTTGAGGCAGCCAGAAAGAACATAGAAGAAGCTGAAATAAGGTCACTGTT
AGAAGAATGTAAGTGGCCTAATGATAGACAAGACCCACTTTTAGACAAAA
TCAAGGTGATTCGTAGAGAACTTCAAATGAATTTGGTTAGGACCGATTCT
TCGTACCCTCATATTGTTGATGTGGATTGGCGAGTGGACTATTGTATCAA
GagtaaTCAAGTGGAGAAATTGAACGACTCAAGCTACATGGTATCATTAA
AAACACAGGAACCAAATAACAAAGAAGGAAATGTCGAATTCTTTTGCTCT
GTTGACCAGCTACAGGATTTAGTTTCAAAGCTGAAAGATGCGAGTAAAAC
TTTGGAAAAAGCAAGCCAAGGTTAAACAAAGAAGATGAAGAATGGAATAA
TAATTGTTGATGTCACCAGAAAAGTTGAAGATCTGAAGATTTAATAAGAA
CTGGCGACACTTTAAATGATTGTTTACTTTAAGAGAACTCTTAAAATAAT
TGGACAATTTATTGCCAGAATCTATTGCTTTTTGGATGATTTATTGATAT
GATTCAATTTGATGACACAGACTTTCTCTTGATTGACTTCGGATACAATA
AATTTATGTACACATGTTCTTGAGTGAGTGGTTCTTCGAGAAACATGGAA
ATTGGTGTAACCATTTTGCATATGTAGTAGAGATATGACAATTTACTATA
TTTGCTTTACTTTCGTTATAGAGaagtacacccctgtttcacagaccCGA
TAGGAGCCCCGCCATACtggaaaattttcccaaaatttttttcccgattg
gaaaaataccctataaCTTTATAACTTGAtcaattgactttgatttcatc
caaatttgaaattcaatggaagaaaTTGTACTCCGAAACCATATCCCTAC
TGAGTTCTTtaactttggaacaatagaagTTTCATCTCTATCcctattgg
gatttcgatagaattttttccccaatgtgggaaaaagttccacttgAGCT
GTGAGACTGGGTGTGGAAGTATACTCTGAAGCTTTAGCTAATTTCGTCTT
TTGAATCTCGTCTTCGTCGGTACATTGACAGTTGAGACATTGGACTCCCA
CGcgccatttttttttatttgcacTTTGTGGATTATGTTCAGAAAACTTA
ATGACTATGTTAGCGGAAATTTTGATTAcaattttattgcatttttattg
ttattttttgacCCTGTAGTACtgtatttttgctaaaatatttCATCGGA
AAATATCTGTTGCCCGTGTATTCCTTGTCCAGTTGTCATCTTTAAGTTAA
GTGAATTTTCATTCCTGATTTCTTTTTACCTGAGAATGACCGAAATGCAA
AATGATTTGTTATTTTCAAGAGTAAATCCAGGGCACATGAATACAACACG
GCTCATTTAGTTATCTCGTTTTGTAGTAATTTATCACAAATTTTATTCAT
AATGTAACTAGGGAAGTATATAATATTGGTAGACAAAACTTATAATTTGT
TTATTCCTTCGTTAATTTTGTATTTGACATATTTGACAaagtttttcttc
aaatatatTCATCATATCTCATATAATCTACAtca
Run BLAST on NCBI

protein sequence of TCONS_00062060-protein

>TCONS_00062060-protein ID=TCONS_00062060-protein|Name=TCONS_00062060-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
FIYLFRKLKKNCNKMDLNLNVLEGLKLVGDIVNVPDKPFESLVNLTYSCL
SNKEPIEPNEFNSLQGVDSSVAKQAFYGLNTLIVEAARKNIEEAEIRSLL
EECKWPNDRQDPLLDKIKVIRRELQMNLVRTDSSYPHIVDVDWRVDYCIK
SNQVEKLNDSSYMVSLKTQEPNNKEGNVEFFCSVDQLQDLVSKLKDASKT
LEKASQG
Run BLAST on NCBI

transcript from alignment at scaffold_361:1493290..1498988-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062060 ID=TCONS_00062060|Name=TCONS_00062060|organism=Clytia hemisphaerica|type=transcript|length=5699bp|location=Sequence derived from alignment at scaffold_361:1493290..1498988- (Clytia hemisphaerica)
TTTTATTTATTTATTTAGAAAATTAAAAAAAAATTGTAATAAAATGGATT
TGAATTTAAATGTGTTGGAAGGCTTGAAACTTGTTGGAGACATTGTAAAT
GTTCCTGATAAACCGTTTGAATCACTTGTTAACTTGACATACTCATGTCT
ATCAAACAAAGAACCAATAGAGCCCAATGAGTTTAGTAAGCACAACTTTT
GTTTTAGTTCTTAACAATTATCATATGATCAACTATGAAACTGTCAAAAA
TATACTATTTCTTTGGAGAAGGCTGCTATAATTATCATTAATTTCTATTT
TTTCCTCAGTTTTCCCAGAGTCCTTTTCCCTTTGAGATTTATTAATGAAA
TGATCCATTTTCATACTTTACTTGCAGATTCTCTACAGGGAGTAGACTCG
TCTGTTGCAAAACAAGCTTTCTATGGATTGAACACATTGATTGTTGAGGC
AGCCAGAAAGAACATAGAAGAAGCTGAAATAAGGTGTTATTCAAATATTT
ATCTTTACATATGGACGATAGTCGTTGTTTTTTTCGTTTGGAAATTAAAA
AAGGCACACTTTAGTTATATACCAGGTGCCCCGTCAAATAGTTATGCTCT
TATGATTATTTTTAAACTCTTTGTACCAGTTTGTACAATCATTTGGAAGA
AGAAATGTAAAATTGAGTTTCAATGGGTCATTTTTTATATCAAATTTGGC
TCATTTGAGAAAATAATGAAACTTGAATTTCAATTTCAAGAAAAACTTTG
TAAGAAAATACCAAAAATATTATATTTTATTAAAAGTATGGGTTTTCAGG
TATACTTTTATCCATTCTGAGACTTAAGTTTCAGAAACTTTTTTTTAAGA
CAAAAACTTGTTATCATGCAAAAGTATTTCAGTGTTAATTTTGGTTTTCT
GAAATAAAGTTTTATAGAAGATAATTTACATCAAAGAAGGAATTTTTTAT
GTTGTACACAGTATGTATGACACCATATAGGTTAAGATCCCACCGAAGAT
CAATCAAAAACAATTGTTTTAACATAAATTTCAATTATGTTTTATTTCTT
GTTAACAGGTCACTGTTAGAAGAATGTAAGTGGCCTAATGATAGACAAGA
CCCACTTTTAGACAAAATCAAGGTATGTAATATGGTATGGATTTCTCACA
CCCCTATTAGGGTCTGCCTAAAATGGCCATTTTCTTTTGGTGATATGGAT
TACGCGAATTGAAATATAGACAACAATAGACAACAATACAATAAAGAACA
AAGATATATTATTCGATAAGATATCTTGCCATAAATGCAAAAAGCTATTG
ATTTAAATAGTCTGCATAATTAGTAAATCCACGTTTTTCCTTTTTTGAAA
TAAAACATGATATTTCATATATATCTTTACTGTAGTGCCAAGAAAATGCT
ATTAGCTACTCTTTCTGCAGAAAATTGATAAATTGCTTATACATTTTTTA
GGTGATTCGTAGAGAACTTCAAATGAATTTGGTTAGGTAATTATTATCAT
TTGTTCCTTCTCTGAATAATTTTCGGTCCTTTTAAAAAATCCCTAATTTA
GCAGTATTGGATGTGTTTTTCGCCCAAAAGAGGCTAAAATTATTGGTTAG
CCTAGAGGTAATTTATGCGTATTTGCTAATATGCATAGATTAACCGAAAA
AGTGCAACACAATCATTCGGTCAGTGCTTTGATTCTTGTATGTTTGGTAT
AAAGATTAAAAGCTTGTGGTAAAAAAAAGACAAGTCACGCATGCGTGTTT
CAATGCTTTCGGGCAAATTTTGCTAACATCAATAATTTAAGCATCGTCGA
GGCGAGATAAGACTTTAAGAGGGGGAGTCGCGGGTAAACCTCCTAATTAT
GCTTTTTTTAGAATACAAAGTCAACGAGAAGAGATGCAAATCTAGTGAAC
ATTTTTTAATAGAGGGCTAGAAACGTTTATATAGCTTCGTTTTCTGTTTC
CTTTTTGTTCGAACCACCTACTCGTAGGTTAGAAGTCTGACGCGCCACCG
ACTGAACTATTTAAAAAACATTATACAATATAGGCACTGGAAATAGTGCT
TTTTATTTTTAAAACACCCTTGTCTCACACAATATAGATTCCTATTGAAA
TCCTAATGGCGATAGAAATTCTATTGTTCCAAGGTTAAAAAGTCCCAGTG
GGGATGGTTTTGGAGTGTAATTTTTAAACATGGAGTTTCGAGTGGGGTTG
AAATCAAAAACAATTTCCCAGTGGGGCTGAAATTCAAGGGCATATTCCCA
CCAGGGATGTAATTTTTGCTTATTTTCCAGTGGGGCTGGGGTCCCAGAGG
GTTTGTGACACAGGGGTGTTTTAAATATGGTCTCGATGTCGAAAAAAAAA
CACATTTTTTAAACATGTATACCTTTATTCGACAATACTGTTTCCTAAAT
TTTTCTATGGCTCTATTTTTCAGATCAACGGAACATAGGTCTCCCGTGAG
TTTTAAGCCCCCTCCCCAATGATTCATGCAAATTTTGGTAGCCCCCAGAG
CTTTTGACCCTCGACACTTTTAAAAGTTTGTTCCACAAAAAAGGGCTATT
TAATGTAAATTGTGTTGCAGTTCGAAGGTTAAGATAAAATATTTTTTACC
TTCGTGAGCTTTAATTTGAGGCCAACCATTAAGATAGGTAAAGCATTCAG
CCCCCAGGTTGAATGATGAGATTTCAGCTCCCCCAAAATATTTGAAACAT
TTTAAGCATTTTTGGGCTTTTTAGAGGGTGTAACTAGCAGGGGGCCTGAC
GCCATGACGGAAGCAGCCTCTTTCTATTTTTTTTTTTATTACTTTCGGTT
TTGATTTTGCGATTTTGCATATAGTTTTAATTTTAAATACTTTGTGGTTA
TATTTACTGTCGTCAACTATCCATTTCTTTATCCATTCTCTTGTGAATGT
CACTAACAGTCAAGATTCAATCAACATCAAAAGAATTGCTTGAAGAGAAA
ACTCCGATCAAGATCCTTTTCTTTTCCAGGACCGATTCTTCGTACCCTCA
TATTGTTGATGTGGATTGGCGAGTGGACTATTGTATCAAGGTGTGATTTT
TACCACCGGCCGATTTACGAAAGATATAAGGGCTTAATGGCTAACTTTAT
CCGTAATAATGTGAATTTTTACAAAATTTGCTTTTTCATGGTAAAATGGT
AACATTTAGTATGCAGCTCTTTTAGTTTAGTTCAAAGGTTTAAAAGTTTT
AAGCTGTTGAAGTCAAAGTTTCAATTTTGAAAAAGTTAAAAATCACATCA
AAAAGAGCGGTATTGGATGAACGCAATTCTTCACAGTGTCGAGATTTCAC
TATTTCAACGACCAATTGATCCTAGCTTGGTTTCTACCGATTAACACAAA
AGAGGGAGGGGAAAAAATTGTCAACAAACTTGAGTGAAAATGCTAGAAAA
CCAAAAATTCTCGAATGAATACTATTCTGGCCTCTGGATTGAAAAAACAA
AAACTAAAAATTTGAACCACTGCCTAAAATCTTTTAGCCGGTGGTGGCTA
AGGTTCATTAGTTTTGAAAAAGATTTCCCATGTATTAATTTTGTTGGCAT
GTTAGAAGTTAGAATTATGATCAACTTGTTCAATTTGATAATGCGATACT
CCAGGATTCTCTAAATCGGATAAAACTTTACATTTTTTTTTCAGAGTAAT
CAAGTGGAGAAATTGAACGACTCAAGCTACATGGTATCATTAAAAACACA
GGTAACACGTGACAATGGTTCTGTTAGCAACGTTTCATTTTCTTATTCTA
TATTTTAAAATGAATGAATCCAGATTTTCAGGGACTGACTTATTTCTCTT
TACTAAGAAAATATTCGTATATTTTGGCCTCACATTCAAGTGCTAACATT
ATTAGTGATGATTCTACTCAGTGGTATCTTTCCAACGTGATTCCCATGAG
CTTGGTTCACTAAGGGTTTGACAAACTACGTCTTGATTTTCTTTCAGGAA
CCAAATAACAAAGAAGGAAATGTCGAATTCTTTTGCTCTGTTGACCAGCT
ACAGGTATTCCATTGTTTTACATGATATTTGATGTCAGATTGATATTATA
TACTAGTGATTCTTTGTCGGCATTTTTCACTGTAAGACTGTAGAAATGCT
TAGTGTGAGGGGTATAGTTTTGCACATAAAAATCATAATAAGCAAGATTG
TAAAGAGATAAGCTTAAGCTCCCCGGAAATATTCTAACTCAGTGTTGGTA
CTTTTCAGGCTGTAGGCGGAAATTCGAGATTTTTCTGTCAGATTTTTGTC
CAATTTTCGTAAACATTTTAGAATGTTTATTGAAAAAAAATAAGATTTAG
CTTTGGATTTGAAGAGATTTATAGGATTTTTTGCGAATAAAGTCTTTAAA
TTTCCTTGGATAGCATCGGCTACATTTAAGTGACGCTAAAATTCTAGTCA
TAAAAATAACACTTGGTTAAAACCTTTAGGATTTAGTTTCAAAGCTGAAA
GATGCGAGTAAAACTTTGGAAAAAGCAAGCCAAGGTTAAACAAAGAAGAT
GAAGAATGGAATAATAATTGTTGATGTCACCAGAAAAGTTGAAGATCTGA
AGATTTAATAAGAACTGGCGACACTTTAAATGATTGTTTACTTTAAGAGA
ACTCTTAAAATAATTGGACAATTTATTGCCAGAATCTATTGCTTTTTGGA
TGATTTATTGATATGATTCAATTTGATGACACAGACTTTCTCTTGATTGA
CTTCGGATACAATAAATTTATGTACACATGTTCTTGAGTGAGTGGTTCTT
CGAGAAACATGGAAATTGGTGTAACCATTTTGCATATGTAGTAGAGATAT
GACAATTTACTATATTTGCTTTACTTTCGTTATAGAGAAGTACACCCCTG
TTTCACAGACCCGATAGGAGCCCCGCCATACTGGAAAATTTTCCCAAAAT
TTTTTTCCCGATTGGAAAAATACCCTATAACTTTATAACTTGATCAATTG
ACTTTGATTTCATCCAAATTTGAAATTCAATGGAAGAAATTGTACTCCGA
AACCATATCCCTACTGAGTTCTTTAACTTTGGAACAATAGAAGTTTCATC
TCTATCCCTATTGGGATTTCGATAGAATTTTTTCCCCAATGTGGGAAAAA
GTTCCACTTGAGCTGTGAGACTGGGTGTGGAAGTATACTCTGAAGCTTTA
GCTAATTTCGTCTTTTGAATCTCGTCTTCGTCGGTACATTGACAGTTGAG
ACATTGGACTCCCACGCGCCATTTTTTTTTATTTGCACTTTGTGGATTAT
GTTCAGAAAACTTAATGACTATGTTAGCGGAAATTTTGATTACAATTTTA
TTGCATTTTTATTGTTATTTTTTGACCCTGTAGTACTGTATTTTTGCTAA
AATATTTCATCGGAAAATATCTGTTGCCCGTGTATTCCTTGTCCAGTTGT
CATCTTTAAGTTAAGTGAATTTTCATTCCTGATTTCTTTTTACCTGAGAA
TGACCGAAATGCAAAATGATTTGTTATTTTCAAGAGTAAATCCAGGGCAC
ATGAATACAACACGGCTCATTTAGTTATCTCGTTTTGTAGTAATTTATCA
CAAATTTTATTCATAATGTAACTAGGGAAGTATATAATATTGGTAGACAA
AACTTATAATTTGTTTATTCCTTCGTTAATTTTGTATTTGACATATTTGA
CAAAGTTTTTCTTCAAATATATTCATCATATCTCATATAATCTACATCA

Coding sequence (CDS) from alignment at scaffold_361:1493290..1498988-

>TCONS_00062060 ID=TCONS_00062060|Name=TCONS_00062060|organism=Clytia hemisphaerica|type=CDS|length=4992bp|location=Sequence derived from alignment at scaffold_361:1493290..1498988- (Clytia hemisphaerica)
GATTTAGTTTCAAAGCTGAAAGATGCGAGTAAAACTTTGGAAAAAGCAAG
CCAAGGTTAAGAACCAAATAACAAAGAAGGAAATGTCGAATTCTTTTGCT
CTGTTGACCAGCTACAGAGTAATCAAGTGGAGAAATTGAACGACTCAAGC
TACATGGTATCATTAAAAACACAGGACCGATTCTTCGTACCCTCATATTG
TTGATGTGGATTGGCGAGTGGACTATTGTATCAAGGTGATTCGTAGAGAA
CTTCAAATGAATTTGGTTAGGTCACTGTTAGAAGAATGTAAGTGGCCTAA
TGATAGACAAGACCCACTTTTAGACAAAATCAAGATTCTCTACAGGGAGT
AGACTCGTCTGTTGCAAAACAAGCTTTCTATGGATTGAACACATTGATTG
TTGAGGCAGCCAGAAAGAACATAGAAGAAGCTGAAATAAGTTTATTTATT
TATTTAGAAAATTAAAAAAAAATTGTAATAAAATGGATTTGAATTTAAAT
GTGTTGGAAGGCTTGAAACTTGTTGGAGACATTGTAAATGTTCCTGATAA
ACCGTTTGAATCACTTGTTAACTTGACATACTCATGTCTATCAAACAAAG
AACCAATAGAGCCCAATGAGTTTAGATTTAGTTTCAAAGCTGAAAGATGC
GAGTAAAACTTTGGAAAAAGCAAGCCAAGGTTAAGAACCAAATAACAAAG
AAGGAAATGTCGAATTCTTTTGCTCTGTTGACCAGCTACAGAGTAATCAA
GTGGAGAAATTGAACGACTCAAGCTACATGGTATCATTAAAAACACAGGA
CCGATTCTTCGTACCCTCATATTGTTGATGTGGATTGGCGAGTGGACTAT
TGTATCAAGGTGATTCGTAGAGAACTTCAAATGAATTTGGTTAGGTCACT
GTTAGAAGAATGTAAGTGGCCTAATGATAGACAAGACCCACTTTTAGACA
AAATCAAGATTCTCTACAGGGAGTAGACTCGTCTGTTGCAAAACAAGCTT
TCTATGGATTGAACACATTGATTGTTGAGGCAGCCAGAAAGAACATAGAA
GAAGCTGAAATAAGTTTATTTATTTATTTAGAAAATTAAAAAAAAATTGT
AATAAAATGGATTTGAATTTAAATGTGTTGGAAGGCTTGAAACTTGTTGG
AGACATTGTAAATGTTCCTGATAAACCGTTTGAATCACTTGTTAACTTGA
CATACTCATGTCTATCAAACAAAGAACCAATAGAGCCCAATGAGTTTAGA
TTTAGTTTCAAAGCTGAAAGATGCGAGTAAAACTTTGGAAAAAGCAAGCC
AAGGTTAAGAACCAAATAACAAAGAAGGAAATGTCGAATTCTTTTGCTCT
GTTGACCAGCTACAGAGTAATCAAGTGGAGAAATTGAACGACTCAAGCTA
CATGGTATCATTAAAAACACAGGACCGATTCTTCGTACCCTCATATTGTT
GATGTGGATTGGCGAGTGGACTATTGTATCAAGGTGATTCGTAGAGAACT
TCAAATGAATTTGGTTAGGTCACTGTTAGAAGAATGTAAGTGGCCTAATG
ATAGACAAGACCCACTTTTAGACAAAATCAAGATTCTCTACAGGGAGTAG
ACTCGTCTGTTGCAAAACAAGCTTTCTATGGATTGAACACATTGATTGTT
GAGGCAGCCAGAAAGAACATAGAAGAAGCTGAAATAAGTTTATTTATTTA
TTTAGAAAATTAAAAAAAAATTGTAATAAAATGGATTTGAATTTAAATGT
GTTGGAAGGCTTGAAACTTGTTGGAGACATTGTAAATGTTCCTGATAAAC
CGTTTGAATCACTTGTTAACTTGACATACTCATGTCTATCAAACAAAGAA
CCAATAGAGCCCAATGAGTTTAGATTTAGTTTCAAAGCTGAAAGATGCGA
GTAAAACTTTGGAAAAAGCAAGCCAAGGTTAAGAACCAAATAACAAAGAA
GGAAATGTCGAATTCTTTTGCTCTGTTGACCAGCTACAGAGTAATCAAGT
GGAGAAATTGAACGACTCAAGCTACATGGTATCATTAAAAACACAGGACC
GATTCTTCGTACCCTCATATTGTTGATGTGGATTGGCGAGTGGACTATTG
TATCAAGGTGATTCGTAGAGAACTTCAAATGAATTTGGTTAGGTCACTGT
TAGAAGAATGTAAGTGGCCTAATGATAGACAAGACCCACTTTTAGACAAA
ATCAAGATTCTCTACAGGGAGTAGACTCGTCTGTTGCAAAACAAGCTTTC
TATGGATTGAACACATTGATTGTTGAGGCAGCCAGAAAGAACATAGAAGA
AGCTGAAATAAGTTTATTTATTTATTTAGAAAATTAAAAAAAAATTGTAA
TAAAATGGATTTGAATTTAAATGTGTTGGAAGGCTTGAAACTTGTTGGAG
ACATTGTAAATGTTCCTGATAAACCGTTTGAATCACTTGTTAACTTGACA
TACTCATGTCTATCAAACAAAGAACCAATAGAGCCCAATGAGTTTAGATT
TAGTTTCAAAGCTGAAAGATGCGAGTAAAACTTTGGAAAAAGCAAGCCAA
GGTTAAGAACCAAATAACAAAGAAGGAAATGTCGAATTCTTTTGCTCTGT
TGACCAGCTACAGAGTAATCAAGTGGAGAAATTGAACGACTCAAGCTACA
TGGTATCATTAAAAACACAGGACCGATTCTTCGTACCCTCATATTGTTGA
TGTGGATTGGCGAGTGGACTATTGTATCAAGGTGATTCGTAGAGAACTTC
AAATGAATTTGGTTAGGTCACTGTTAGAAGAATGTAAGTGGCCTAATGAT
AGACAAGACCCACTTTTAGACAAAATCAAGATTCTCTACAGGGAGTAGAC
TCGTCTGTTGCAAAACAAGCTTTCTATGGATTGAACACATTGATTGTTGA
GGCAGCCAGAAAGAACATAGAAGAAGCTGAAATAAGTTTATTTATTTATT
TAGAAAATTAAAAAAAAATTGTAATAAAATGGATTTGAATTTAAATGTGT
TGGAAGGCTTGAAACTTGTTGGAGACATTGTAAATGTTCCTGATAAACCG
TTTGAATCACTTGTTAACTTGACATACTCATGTCTATCAAACAAAGAACC
AATAGAGCCCAATGAGTTTAGATTTAGTTTCAAAGCTGAAAGATGCGAGT
AAAACTTTGGAAAAAGCAAGCCAAGGTTAAGAACCAAATAACAAAGAAGG
AAATGTCGAATTCTTTTGCTCTGTTGACCAGCTACAGAGTAATCAAGTGG
AGAAATTGAACGACTCAAGCTACATGGTATCATTAAAAACACAGGACCGA
TTCTTCGTACCCTCATATTGTTGATGTGGATTGGCGAGTGGACTATTGTA
TCAAGGTGATTCGTAGAGAACTTCAAATGAATTTGGTTAGGTCACTGTTA
GAAGAATGTAAGTGGCCTAATGATAGACAAGACCCACTTTTAGACAAAAT
CAAGATTCTCTACAGGGAGTAGACTCGTCTGTTGCAAAACAAGCTTTCTA
TGGATTGAACACATTGATTGTTGAGGCAGCCAGAAAGAACATAGAAGAAG
CTGAAATAAGTTTATTTATTTATTTAGAAAATTAAAAAAAAATTGTAATA
AAATGGATTTGAATTTAAATGTGTTGGAAGGCTTGAAACTTGTTGGAGAC
ATTGTAAATGTTCCTGATAAACCGTTTGAATCACTTGTTAACTTGACATA
CTCATGTCTATCAAACAAAGAACCAATAGAGCCCAATGAGTTTAGATTTA
GTTTCAAAGCTGAAAGATGCGAGTAAAACTTTGGAAAAAGCAAGCCAAGG
TTAAGAACCAAATAACAAAGAAGGAAATGTCGAATTCTTTTGCTCTGTTG
ACCAGCTACAGAGTAATCAAGTGGAGAAATTGAACGACTCAAGCTACATG
GTATCATTAAAAACACAGGACCGATTCTTCGTACCCTCATATTGTTGATG
TGGATTGGCGAGTGGACTATTGTATCAAGGTGATTCGTAGAGAACTTCAA
ATGAATTTGGTTAGGTCACTGTTAGAAGAATGTAAGTGGCCTAATGATAG
ACAAGACCCACTTTTAGACAAAATCAAGATTCTCTACAGGGAGTAGACTC
GTCTGTTGCAAAACAAGCTTTCTATGGATTGAACACATTGATTGTTGAGG
CAGCCAGAAAGAACATAGAAGAAGCTGAAATAAGTTTATTTATTTATTTA
GAAAATTAAAAAAAAATTGTAATAAAATGGATTTGAATTTAAATGTGTTG
GAAGGCTTGAAACTTGTTGGAGACATTGTAAATGTTCCTGATAAACCGTT
TGAATCACTTGTTAACTTGACATACTCATGTCTATCAAACAAAGAACCAA
TAGAGCCCAATGAGTTTAGATTTAGTTTCAAAGCTGAAAGATGCGAGTAA
AACTTTGGAAAAAGCAAGCCAAGGTTAAGAACCAAATAACAAAGAAGGAA
ATGTCGAATTCTTTTGCTCTGTTGACCAGCTACAGAGTAATCAAGTGGAG
AAATTGAACGACTCAAGCTACATGGTATCATTAAAAACACAGGACCGATT
CTTCGTACCCTCATATTGTTGATGTGGATTGGCGAGTGGACTATTGTATC
AAGGTGATTCGTAGAGAACTTCAAATGAATTTGGTTAGGTCACTGTTAGA
AGAATGTAAGTGGCCTAATGATAGACAAGACCCACTTTTAGACAAAATCA
AGATTCTCTACAGGGAGTAGACTCGTCTGTTGCAAAACAAGCTTTCTATG
GATTGAACACATTGATTGTTGAGGCAGCCAGAAAGAACATAGAAGAAGCT
GAAATAAGTTTATTTATTTATTTAGAAAATTAAAAAAAAATTGTAATAAA
ATGGATTTGAATTTAAATGTGTTGGAAGGCTTGAAACTTGTTGGAGACAT
TGTAAATGTTCCTGATAAACCGTTTGAATCACTTGTTAACTTGACATACT
CATGTCTATCAAACAAAGAACCAATAGAGCCCAATGAGTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038894XLOC_038894Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062060-exon-scaffold_361-1575043694:1498804..1498988TCONS_00062060-exon-scaffold_361-1575043694:1498804..1498988Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1575043694:1498506..1498611TCONS_00062060-exon-scaffold_361-1575043694:1498506..1498611Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1575043694:1497867..1497930TCONS_00062060-exon-scaffold_361-1575043694:1497867..1497930Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1575043694:1497503..1497537TCONS_00062060-exon-scaffold_361-1575043694:1497503..1497537Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1575043694:1495949..1496009TCONS_00062060-exon-scaffold_361-1575043694:1495949..1496009Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1575043694:1495288..1495344TCONS_00062060-exon-scaffold_361-1575043694:1495288..1495344Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1575043694:1494985..1495041TCONS_00062060-exon-scaffold_361-1575043694:1494985..1495041Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1575043694:1493290..1494559TCONS_00062060-exon-scaffold_361-1575043694:1493290..1494559Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1510915933:1498804..1498988TCONS_00062060-exon-scaffold_361-1510915933:1498804..1498988Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1510915933:1498506..1498611TCONS_00062060-exon-scaffold_361-1510915933:1498506..1498611Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1510915933:1497867..1497930TCONS_00062060-exon-scaffold_361-1510915933:1497867..1497930Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1510915933:1497503..1497537TCONS_00062060-exon-scaffold_361-1510915933:1497503..1497537Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1510915933:1495949..1496009TCONS_00062060-exon-scaffold_361-1510915933:1495949..1496009Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1510915933:1495288..1495344TCONS_00062060-exon-scaffold_361-1510915933:1495288..1495344Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1510915933:1494985..1495041TCONS_00062060-exon-scaffold_361-1510915933:1494985..1495041Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1510915933:1493290..1494559TCONS_00062060-exon-scaffold_361-1510915933:1493290..1494559Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1491911889:1498804..1498988TCONS_00062060-exon-scaffold_361-1491911889:1498804..1498988Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1491911889:1498506..1498611TCONS_00062060-exon-scaffold_361-1491911889:1498506..1498611Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1491911889:1497867..1497930TCONS_00062060-exon-scaffold_361-1491911889:1497867..1497930Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1491911889:1497503..1497537TCONS_00062060-exon-scaffold_361-1491911889:1497503..1497537Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1491911889:1495949..1496009TCONS_00062060-exon-scaffold_361-1491911889:1495949..1496009Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1491911889:1495288..1495344TCONS_00062060-exon-scaffold_361-1491911889:1495288..1495344Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1491911889:1494985..1495041TCONS_00062060-exon-scaffold_361-1491911889:1494985..1495041Clytia hemisphaericaexon
TCONS_00062060-exon-scaffold_361-1491911889:1493290..1494559TCONS_00062060-exon-scaffold_361-1491911889:1493290..1494559Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062060-proteinTCONS_00062060-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1493290..1498988 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.4042	16.7237	12.4017	10.8522	12.7995	10.6259	11.6134	13.5248	15.5366	16.2155	17.1761	17.4086	13.713	11.6792	11.1754	13.1231	11.482	14.0519	9.50959	8.17932	7.86876	7.50129	13.2592	13.4874	12.041	14.2378	12.7751	9.22763	10.8494	9.64742
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017920COMM
Blast
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BLAST of TCONS_00062060 vs. Swiss-Prot (Human)
Match: COMD3 (COMM domain-containing protein 3 OS=Homo sapiens GN=COMMD3 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.662e-26
Identity = 61/194 (31.44%), Postives = 109/194 (56.19%), Query Frame = 2 
Query:   44 MDLNLNVLEGLKLVGDIVNVPDKPFESLVNLTYSCLSNKEPIEPN-EFNSLQGVDSSVAKQAFYGLNTLIVEAARKNIEEAEIRSLLEECKWPNDRQDPLLDKIKVIRRELQMNLVRTDSSYPHIVDVDWRVDYCIKSNQVEKLNDSSYMVSLKTQEPNNKE-GNVEFFCSVDQLQDLVSKLKDASKTLEKASQ 619
            M+L+ +V +G +++ D  +     F  L+   +  L + +  E   +   L+ +D  V K       T I+EA +   +++ + + LE+CK+  +R +    + +  +  L++ L     S PHI DV WR++Y IK+NQ+ ++   +Y+V+L  Q  ++     + F CS++QLQDLV KLKDASK+LE+A+Q
Sbjct:    1 MELSESVQKGFQMLADPRSFDSNAFTLLLRAAFQSLLDAQADEAVLDHPDLKHIDPVVLKHCHAAAATYILEAGKHRADKSTLSTYLEDCKFDRERIELFCTEYQNNKNSLEILLGSIGRSLPHITDVSWRLEYQIKTNQLHRMYRPAYLVTLSVQNTDSPSYPEISFSCSMEQLQDLVGKLKDASKSLERATQ 194
The following BLAST results are available for this feature:
BLAST of TCONS_00062060 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COMD33.662e-2631.44COMM domain-containing protein 3 OS=Homo sapiens G... [more]
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