TCONS_00062058 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062058
Unique NameTCONS_00062058
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1309

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062058 ID=TCONS_00062058|Name=TCONS_00062058|organism=Clytia hemisphaerica|type=transcript|length=1309bp
AACCACTGTAGAACTTATAAAGAACATTGGTATCGGCTCATGCACACGTT
CCATAGCTCCGTCAAACGGAAGTTTATAATCTGCCTAAGAAGCTGTTTAC
CTTTTGCCATgaacactttttttatcattcaaattttcattcacGCGTTA
CACTGTCATCAAATTGAAAATGATCGATCGACCGAATTCAACCTTGCCAT
AGATGATTTTGAGTTCCTTGGAACCCCAATATTGAGTTTCTCTGGCGAAA
ATTACGGGAATGTGTTGCGTTGCGTTCGTCAATGTGTTTCATTGTCGCCT
GTTTGTCGTGCGATCAATGTCAACAAAGAAATGCAGGTTTGCCGAATGTT
TGATCACGTGATTGATGATGGTGTCCgaggaaatcaaaatcaaacgaAAT
GCACCAAAGGTTGGCAATATTTTGGTGTTCAAAATCAGAAGAAGGATGAT
GAGAAATCATCTATTGAGGAGGTCATCACAACAGAAGGAACTACCAGCAC
GACCATCTCTGTCACGCAACCCCCGACCATCTCTGTCATACAACCCACGA
CGATCTCTGTCACACAACCTCCGGAACCAGAACGAATTCTTATCAAAGAA
CCAGCAGGAGTGGAAATTGACCAACCTTTTGTTGAAACAATCCTTGTGGA
GAGAGAAAAGTCTACTACAACGACGACTCAGCAACCCGATGTCGAAACAC
AGTCATTTTGTGACGATAAAGGTTGCTACCGCCTTGCAAAAGGACTTCAA
GGTGAGACAGAGGTCTGCTATGGTTTCAGTCGAAAGCAGCCTGCACGATT
TTTGTTTCCAAAAAAAGGACAAGTGGTTGGTTACAGGCTGGTCCACTCAA
ATGGTTTGATGACTTGCCAACCACTGGGAACAACTCAATCAACCAAATGG
GGTTGTGAAGGACGCATAGAAACCATAATAACAGACCAATCCGATTCTCC
CATCGAAAACTACACTCAAACTGGGAATGTCGATGGTTCGGTAGTGAAAT
TCACTTGGGAAAGGTACTGGAATGGTTTCGCACCACGAAAAACGACATCT
GATGAGGGAAGAGTTTGGTATGAGATTTGATGAACGACAACGTGACAGAT
TTGAACGGAAATgatggaagacattgcattgtcgTCTGGGTAATGTATAA
ACGTCATCTATTTTGATGATCAATGATTATGGTactttcattcaattttt
cagaaGCTTCTTTGTCTTGACTATCAAGTAAACAAgcgttatttttgaaa
actaagCTGTTCCCTTTATGAATGTGATAGAGTTATGTTCTGGAGTTAAT
AGATCGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_361:1475408..1480458-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062058 ID=TCONS_00062058|Name=TCONS_00062058|organism=Clytia hemisphaerica|type=transcript|length=5051bp|location=Sequence derived from alignment at scaffold_361:1475408..1480458- (Clytia hemisphaerica)
AACCACTGTAGAACTTATAAAGAACATTGGTATCGGCTCATGCACACGTT
CCATAGCTCCGTCAAACGGAAGTTTATAATCTGCCTAAGAAGCTGTTTAC
CTTTTGCCATGAACACTTTTTTTATCATTCAAATTTTCATTCACGCGTTA
CACTGTCATCAAATTGAAAATGATCGATCGACCGAATTCAACCTTGCCAT
AGATGATTTTGAGTTCCTTGGAACCCCAATATTGAGTTTCTCTGGCGAAA
ATTACGGGAATGTGTTGCGTTGCGTTCGTCAATGTGTTTCATTGTCGCCT
GTTTGTCGTGCGATCAATGTCAACAAAGAAATGCAGGTTTGCCGAATGTT
TGATCACGTGATTGATGATGGTGTCCGAGGAAATCAAAATCAAACGAAAT
GCACCAAAGGTTGGCAATATTTTGGTGTTCAAAATCAGAAGAAGGATGAT
GAGAAATCATCTATTGAGGTAATCATTACATACTTGTATCACCCGTACAC
GATATGGGACCCCTGCAATATTAACTACATCGTTTCTTAGACTTTGTATA
TATCACATAGTACCAACATAGCTATGACCTCACTAGGTCACTTTGACTTG
GAGATATCGCTTGTTAAAACTTTGATTGTAAGTGTGTTTTATTTATCAGG
AGGTCATCACAACAGAAGGAACTACCAGCACGACCATCTCTGTCACGCAA
CCCCCGACCATCTCTGTCATACAACCCACGACGATCTCTGTCACACAACC
TCCGGAACCAGAACGAATTCTTATCAAAGAACCAGCAGGAGTGGAAATTG
ACCAACCTTTTGTTGAAACAATCCTTGTGGAGAGAGAAAAGTCTACTACA
ACGACGACTCAGCAACCCGATGTCGAAACACAGTCATTTTGTGGTTTAAA
CCCGTTTATTTATTTCCTTCTCATACAATTAAACTGCTCAAATCTTTTTC
GTTTTGAACGAGAGAACCTAAATGTTTTGAATTCCTAGCTTTATGTATAA
AAACCTGTCTCCTTCTGACATAAGAATCTATGCTCTTTGATGCTTTTGAT
CTTTAAAATCAAAGGAAGAACGGGACATAACCAAATGGGTAGTAAGGAGT
GTATGGAGTGTCCCGGGGGGGGGGGGCCCGGGGGGCACTGGGTTTGCGAA
CTGACGGTATGTGCGGGCCAAAAATTGGCTTTTAAAATTGTACCCTTACA
GTGCAGCAAAAATCAGTGAAAATCATACCCTTAGAGTGCATTTCCCTCCC
AATTTTCGATCCCTTTCGTGCAAAAAATGGTCAAAATTCTAGTATTTTTG
GTCAAAATATCTAGAATTTTCAAGAATTTTCTGAAATTTCTACCCTTACA
TTGCATCTTTAGTTTTTCCGACCCTTACAGTGCATTTTAAACATATTGGA
AAAGGTACCCTTAGGACCCGCACATACCCGTCGGTCCTTTTGCCCAGCTG
CCCCCCCCCCGGGGGGGGGGGGGGCTTGGGGGGGGAAAAGGGGGGGGGGG
GGGGGGCCAAAAACGGCCCCTTTTTTCCCCCCCCCCCCCCCCCGGGGGGG
GGGGGGGGGGGGTACTTAGCGAAGGCAAATGGGTGTCTGGTATGTGTGAG
CCATAAGGGCCCCTTTTTCACACCCTCAAAAATCCTTAGAAAAATGACTC
AAAGCGTCATGAACTCTGAAAATATAAAAAATTTCTGCTAAAATTTTGGG
GAAATGGTCTCTCTAAGGGTGGCAAAGACGTCAAAAAATTGACTAATGTT
CTCTCTCTCTAAGGGCTGATTTTCAAGTTTTGACTGTCGGACATATCCGT
CATCTCGCAGACCTTTTTAATAAAAATGAAGATGAAAAAAGAAGAAGAAA
AATGTACGTTCGATCCTTTGAACATAGAAATTATTTTTTGGTGCAGAGGT
ATTTTGAATACTCCTGAGCTCAGCTCTATACCTTATTGGTATATATTTTC
GCGTGTTACAAATTTTCGCGGGTACTTAATTTCGCGAGTTTTTTGGTCAA
TTTTCGCGAAATTTAATACTGTTAANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NATTTTGTTAGTATTTTGACATCAAAAACGTTGTGTTTCAAGCAAAATCA
GTCTTTTTCTTGCTTTATATTCCCACTTTCTGAAAATACCTAGTTTAGTG
AGTCGCAAAATTTAATACATGCGAAAATTTTCCAGAAGTCGGCAATCGCG
AAATTTAATACACGCGAAACACGTTTTTTCGAAAAAATTTCGCGATTCGC
GAAAATTTGTAACACGCGAAAATATATACCAATAAGGTAGTTATTTTTCC
CATAATGCATGTTTTGTTATCGAGGGTTGCTCTTTGTTGGATTCGAAATA
TATATAATAATATTATTTTGCTATATGCGTTCTAGAATTTCTACTAAATA
ATTCTATGTGAAATAAACACCCCTGTCCCACAGACCTAGTGGAAATTTTT
CCCTCAGTGGGAATGAACATCCCAATGAGGATAGAAATTCTATTGTCCCC
AGCTCAAAGTTTCAGAATTGAAGCATCGCTTAAAAATGAAAAAGTAAGGT
TGTAGTGTACATATAAAACGAATGAATCTCTAATCTGGTTAAAATTTCAA
CACGGTGAAAGTTTTGTCATTCCAATTATCCCGCTTTTTCAGACGATAAA
GGTTGCTACCGCCTTGCAAAAGGACTTCAAGGTGAGACAGAGGTCTGCTA
TGGTTTCAGTCGAAAGCAGCCTGCACGATTTTTGTTTCCAAAAAAAGGAC
AAGTGGTTGGTTACAGGCTGGTCCACTCAAATGGTTTGATGACTTGCCAA
CCACTGGGAACAACTCAATCAACCAAATGGGGTTGTGAAGGACGCATAGG
TATAGTACATGTTTTTAATAAACTCTCTGACTAGAATTTGAATATCTTTC
CATCCTGTCTATCTTGTCCAAAATACGGTTTTATTTATAGAAATTATTAT
ACCTACCTATCGAAACTTTTAAAGCCCTTTTATATTAGCTTTATTTTTGA
ATCTGTGGTGGATAAGTGCTGAAATTTTGCGTTTCAAACCGTCAAATATG
ACGTTAAATTACCGGTTCTTACTTGCCTTGGGTTGGTTAAGTACAATTAA
ATCACCTTGTATTTGTAACCAATTAATTGTACCACCTCTTTGTGGGGATA
GTAAATTTTGATCTAAGAAAGATACAGAAAACTATGGATGCATATATTTG
AAATCGGCAATGTTCAAAATTTCAAAAGAGTATAAAATCATTATCGCCAT
TCTTTGTTCTCATTTTCATTTATGCAAACTTTTGAAAGCTTATGTTTCAA
TCCATTCAAAATTATCTTTCCAATGAGGTATATTTCGTTTTATTACTGTT
TCCCCTATCCACAGACTGTCATTCTTATGGAATCCACTTTAGTTGGGGAC
AAACTATTGGTCACTGCAAACCCTACAAACCCTACAAAAATCCCATATTT
ACAAATCTTTGGTCACAATTTTGAAGGGTTTGCAGCGTTTGAAGGAGATT
CAAACACAGTACCTCTTGAGCTACTTTGTTTGCAGGAGTTGCAGCTGAAT
TTCAACCTTTTCTCGGCAAAAAGAAATGTGCAAATCTTTGGGACATTCAA
ACCCTACAAACCCTACAGAACATTTACAAAATCTGCCATATTTGTTTTTA
TTCTTTGGTTTAAATTACTAAGATTAAAAAGCCGTATTTGTTAACAATGT
CAAAAAAGGATGACTGACCAAGGATAAACCATGTGGTTTCTCTTCTCTTT
ATTATTACAGTGGGCGGACTCACCTTTCAGACCAATTTTTAGCTATCCTT
GAGTCGGCGTTCGTTACGGCGGAGAAGAGAAATCATGAGAGAGAAGCTGA
CCCTCCGATATCATCGGACCGGGCCCTATCTTGTGATAGTTTCCTACCTC
TAGATAGGGAAATTACAGCGCTTACCAGACATTGTACTCTGTGCTCGTGA
CACATCAGAGCCGTGCTGTATCAATGATGATGCTCGTACAGTACGGGAGA
ACCTTGAGTACCATCACCGCACCACATTCAATGTCCAGCATATATCCCCA
TATTCTTGTATCAGAGTAATGGTACCCTATTCCCCTCACATAGTATGGGT
TGACCCGGGCCAAGGTACATTCAATCGCCAAGTGAATCGAAGCACCGAGT
GGGAAACGAACCCTGACCTCCAGCACGGAAGTCAAGAACGGTGACCACTA
ACTACTGCCCAATCATGTAGGCAATCAACAAATTTCAACCTACAAACCCT
GCAGATTTGTAAATCTTTGAACAAAGTTGCAGGAGTTGAATATGTAGCTG
TTGCAGCAGATGAAGGTGACCAATAGTTTGTACCCGTTGTTAGCTCTTAT
TTTTTCGTTTATCTCCAGAAACCATAATAACAGACCAATCCGATTCTCCC
ATCGAAAACTACACTCAAACTGGGAATGTCGATGGTTCGGTAGTGAAATT
CACTTGGGAAAGGTACTGGAATGGTTTCGCACCACGAAAAACGACATCTG
ATGAGGGAAGAGTTTGGTATGAGGTTGGTTTTTTCTTTGAAGCCTTTATT
TACGATTTTTTCTATTCACTCACTCACTCATTCACTCATCCAATAGGGGG
GCTATTCAATCTTTTCAAACTATCCAATATTTTCATTAATTCAACACTTT
CATTATTTTCAGTTAGATTTGATGAACGACAACGTGACAGATTTGAACGG
AAATGATGGAAGACATTGCATTGTCGTCTGGGTAATGTATAAACGTCATC
TATTTTGATGATCAATGATTATGGTACTTTCATTCAATTTTTCAGAAGCT
TCTTTGTCTTGACTATCAAGTAAACAAGCGTTATTTTTGAAAACTAAGCT
GTTCCCTTTATGAATGTGATAGAGTTATGTTCTGGAGTTAATAGATCGGT
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038892XLOC_038892Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062058-exon-scaffold_361-1575043694:1479991..1480458TCONS_00062058-exon-scaffold_361-1575043694:1479991..1480458Clytia hemisphaericaexon
TCONS_00062058-exon-scaffold_361-1575043694:1479566..1479809TCONS_00062058-exon-scaffold_361-1575043694:1479566..1479809Clytia hemisphaericaexon
TCONS_00062058-exon-scaffold_361-1575043694:1477460..1477666TCONS_00062058-exon-scaffold_361-1575043694:1477460..1477666Clytia hemisphaericaexon
TCONS_00062058-exon-scaffold_361-1575043694:1475786..1475940TCONS_00062058-exon-scaffold_361-1575043694:1475786..1475940Clytia hemisphaericaexon
TCONS_00062058-exon-scaffold_361-1575043694:1475408..1475642TCONS_00062058-exon-scaffold_361-1575043694:1475408..1475642Clytia hemisphaericaexon
TCONS_00062058-exon-scaffold_361-1510915933:1479991..1480458TCONS_00062058-exon-scaffold_361-1510915933:1479991..1480458Clytia hemisphaericaexon
TCONS_00062058-exon-scaffold_361-1510915933:1479566..1479809TCONS_00062058-exon-scaffold_361-1510915933:1479566..1479809Clytia hemisphaericaexon
TCONS_00062058-exon-scaffold_361-1510915933:1477460..1477666TCONS_00062058-exon-scaffold_361-1510915933:1477460..1477666Clytia hemisphaericaexon
TCONS_00062058-exon-scaffold_361-1510915933:1475786..1475940TCONS_00062058-exon-scaffold_361-1510915933:1475786..1475940Clytia hemisphaericaexon
TCONS_00062058-exon-scaffold_361-1510915933:1475408..1475642TCONS_00062058-exon-scaffold_361-1510915933:1475408..1475642Clytia hemisphaericaexon
TCONS_00062058-exon-scaffold_361-1491911889:1479991..1480458TCONS_00062058-exon-scaffold_361-1491911889:1479991..1480458Clytia hemisphaericaexon
TCONS_00062058-exon-scaffold_361-1491911889:1479566..1479809TCONS_00062058-exon-scaffold_361-1491911889:1479566..1479809Clytia hemisphaericaexon
TCONS_00062058-exon-scaffold_361-1491911889:1477460..1477666TCONS_00062058-exon-scaffold_361-1491911889:1477460..1477666Clytia hemisphaericaexon
TCONS_00062058-exon-scaffold_361-1491911889:1475786..1475940TCONS_00062058-exon-scaffold_361-1491911889:1475786..1475940Clytia hemisphaericaexon
TCONS_00062058-exon-scaffold_361-1491911889:1475408..1475642TCONS_00062058-exon-scaffold_361-1491911889:1475408..1475642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1475408..1480458 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0639524	0.0622713	0	0.106022	0.0429392	0	0	0	0.363542	0	0	0	0.0639158	0	0	0	0.120041	0.123319	0.135586	0	0.0309811	0	0.110072	0.0669027	0	0	0	0.0467632	0	0.0718703
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062058 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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