TCONS_00062056 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062056
Unique NameTCONS_00062056
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length440

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062056 ID=TCONS_00062056|Name=TCONS_00062056|organism=Clytia hemisphaerica|type=transcript|length=440bp
CATGATTTTGCCATCGAAACCCTGTATAAAATATCCAGTTTCTGTATTGA
TTTATTTTGCGCAATGTATTTCCTTTAAAACAATCTGTATATTATAAAGA
AGATATTTAGAGTTCGTGAGCGAACGGGTTGAAAACATCTCCATCTTCTT
CGTCTTCACTCTCGTCATCAAGTTCGTATTCACTCACCTCGTCTTCGCTT
TCCTCCTCCGATTCTTCGCTTTCCTCCTCTTCGCTGTCACTGGCATAAGC
TCCTGCGGCGATGTGGCCGTACCGCTCTACCCATTCAGGGTCGGGTTGAG
AGGGTGGAAAGAGGCGCAACAAAACTGCATGCGGATCGCGACGTCCTTCA
TCTTCACTTTCGCTATCCTCTTCAACATTGTTCCCTTCGAcgccactttc
actttcagtttCGATCTCGGCGTTTGTTTCATATTCCGAT
Run BLAST on NCBI

transcript from alignment at scaffold_361:1459465..1459958-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062056 ID=TCONS_00062056|Name=TCONS_00062056|organism=Clytia hemisphaerica|type=transcript|length=494bp|location=Sequence derived from alignment at scaffold_361:1459465..1459958- (Clytia hemisphaerica)
CATGATTTTGCCATCGAAACCCTGTATAAAATATCCAGTTTCTGTATTGA
TTTATTTTGCGCAATGTATTTCCTTTAAAACAATCTGTATATTATAAAGA
AGATATTTAGAGTTCGTGAGCGAACGGGTTGAAAACATCTCCATCTTCTT
CGTCTTCACTCTCGTCATCAAGTTCGTATTCACTCACCTCGTCTTCGCTT
TCCTCCTCCGATTCTTCGCTTTCCTCCTCTTCGCTGTCACTGGCATAAGC
TCCTGCGGCGATGTGGCCGTACCGCTCTACCCATTCAGGGTCGGGTTGAG
AGGGTGGAAAGAGGCGCAACAAAACTGCATGCGGATCGCGACGTCCTTCA
TCTTCACTTTCGCTATCCTCTTCAACATTGTTCTCTTCGACGCNCCGTCC
TTCATCTTCACTTTCGCCATCCTCTTCAACATTGTTCCCTTCGACGCCAC
TTTCACTTTCAGTTTCGATCTCGGCGTTTGTTTCATATTCCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038891XLOC_038891Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062056-exon-scaffold_361-1575043694:1459583..1459958TCONS_00062056-exon-scaffold_361-1575043694:1459583..1459958Clytia hemisphaericaexon
TCONS_00062056-exon-scaffold_361-1575043694:1459465..1459528TCONS_00062056-exon-scaffold_361-1575043694:1459465..1459528Clytia hemisphaericaexon
TCONS_00062056-exon-scaffold_361-1510915933:1459583..1459958TCONS_00062056-exon-scaffold_361-1510915933:1459583..1459958Clytia hemisphaericaexon
TCONS_00062056-exon-scaffold_361-1510915933:1459465..1459528TCONS_00062056-exon-scaffold_361-1510915933:1459465..1459528Clytia hemisphaericaexon
TCONS_00062056-exon-scaffold_361-1491911889:1459583..1459958TCONS_00062056-exon-scaffold_361-1491911889:1459583..1459958Clytia hemisphaericaexon
TCONS_00062056-exon-scaffold_361-1491911889:1459465..1459528TCONS_00062056-exon-scaffold_361-1491911889:1459465..1459528Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1459465..1459958 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.323946	0	0.183448	0.825591	1.51073	0.881898	0.390608	0.962197	0.488456	0.872276	0	0	0.472329	0.585371	0.265551	0.320503	0.162123	0	0	0.603722	0.234734	0.129281	0.0334489	0.411635	0.959285	1.98638	0.0230083	0.158019	0.145159	0.218436
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062056 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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