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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062032 ID=TCONS_00062032|Name=TCONS_00062032|organism=Clytia hemisphaerica|type=transcript|length=1623bp
GCTCAGACAAGTTCAAACAGTAAAGGGAAGGGGTGACATATATAGTGTTG
TGCTAAAGGAAAGAGAGAGAAAAGCGGGAAAGCTTTCAAAACATAAACGA
CCTgagctaaaaaaaaatttcgccaTCATTGCATGAATCATTAATAAGAG
GCAAAATTAATACCATAAAGCTGGATTTACACGATGGATACCATTCAAGA
GAACCAGGCAATCAAGACATCCCTAATCTCACAAAGGGATGAACGAGCAA
GCACCTCCAGCACTGGCAGCGATACGGTTCCCTTGGTGAGAGATTGCGGA
AAAGAGGACTCCAGTTTCATAGATGTGGAAAATTCACGAAATACAAAATC
TGCTAAAGAAATGGAAGGGGAAACTCATTTTAGCATGGCCTTTGAAAGAT
ACTTTTTTGGAAAGCACTCCGCTTATAGGGAGAGAACAATTCTGGGAGTA
TTATTGACCATCTTGTTGATTTCTTTGATCGTTTTGGTGATTTATGTTTA
CGAACGAATGAAAGAATCGAATGAATATTATGATCGTGAAATTCATTATT
TGAGAAACAAGATTGAGAGTAGAGATCTTGAATATGCTGAAAAGAACCCC
AAATTATCGAATTCGAAGTCAGCTTATACAGGACGCGAAAAAAAGGCTGG
AACTTCTTTCGCTTTTGATAAGGGTAATGACAATTTTGGCAAAGTTATGA
TCAAGGTTGTTGGTAGTGGGGGTTTAGACAAAAGCCAAACCGATACAGCA
CTCAATCACTGGCAAGAAAATCTACGACAAGGAAACATCAGTTTTTACCA
AGGTCGAGAAGTCATTATCAAAATCGCTGGCTACTACCTGATACAAGTTA
GGatGTTTTTCAAGGGCAATGAGAATTACGCTGGACAACATTTAGATTAT
GGTGTGGTCAGAAAAGGTTTACATAAAGAAACAATTTTCATTAGCTCTGC
AACTCGACCGAAAGATATTTGTGGGAGAGCATGCTCCCTGTCTATCTCAG
AGATTGTGCGTTTGGATGAAGGAGACATGTTGAGCATCCAGACAAAAAAG
AGCGGGCAGACCTTTGGCATGTATAAAGATAAAGCAAGTTTCGGTGTTTG
TAAACTCAATTAACCAATGGAAATGTAGCACGGGAATCACATGACTCGAT
TCCAGTCTCTTTTTAAAGGATTTTCTTTACACGGCTGAGGTTTCATTCGG
cgcaaaaatcaattttttattaATAAGAGCAAAGAActaaaacgaaaacg
aaaacaataaaaaaaaagaaattcaaacttttcatgctcgcttacccgag
ccgcactgatgagtcctggggaggacgaaacacgtgtctgcggatagata
tgttgtttacaatttttttaatttttaagttctttaatatttttcatatt
actGCTGTGTAGGAATAGGAAGTAGCGATTTTTCTcataatttctaattt
ttttatagatttaaaATCAAGCATCAATTCTTTAAgcatcaatttttcat
acatCAACTTTTATAGATTTAAAACCAAACATTATTTTAATGTACATAGA
AAATATTCAGACGTCCGAGGAAAAGCCAACTTTTTTTCTCGGACACCCTG
GATGATAGTTAGAATATCTGTTT Run BLAST on NCBI protein sequence of TCONS_00062032-protein >TCONS_00062032-protein ID=TCONS_00062032-protein|Name=TCONS_00062032-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
MDTIQENQAIKTSLISQRDERASTSSTGSDTVPLVRDCGKEDSSFIDVEN
SRNTKSAKEMEGETHFSMAFERYFFGKHSAYRERTILGVLLTILLISLIV
LVIYVYERMKESNEYYDREIHYLRNKIESRDLEYAEKNPKLSNSKSAYTG
REKKAGTSFAFDKGNDNFGKVMIKVVGSGGLDKSQTDTALNHWQENLRQG
NISFYQGREVIIKIAGYYLIQVRMFFKGNENYAGQHLDYGVVRKGLHKET
IFISSATRPKDICGRACSLSISEIVRLDEGDMLSIQTKKSGQTFGMYKDK
ASFGVCKLN Run BLAST on NCBI transcript from alignment at scaffold_361:1038992..1041668- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062032 ID=TCONS_00062032|Name=TCONS_00062032|organism=Clytia hemisphaerica|type=transcript|length=2677bp|location=Sequence derived from alignment at scaffold_361:1038992..1041668- (Clytia hemisphaerica)
GCTCAGACAAGTTCAAACAGTAAAGGGAAGGGGTGACATATATAGTGTTG
TGCTAAAGGAAAGAGAGAGAAAAGCGGGAAAGCTTTCAAAACATAAACGA
CCTGAGCTAAAAAAAAATTTCGCCATCATTGCATGAATCATTAATAAGAG
GCAAAATTAATACCATAAAGCTGGATTTACACGATGGATACCATTCAAGA
GAACCAGGCAATCAAGACATCCCTAATCTCACAAAGGGATGAACGAGCAA
GCACCTCCAGCACTGGCAGCGATACGGTTCCCTTGGTGAGAGATTGCGGA
AAAGAGGACTCCAGTTTCATAGATGTGGAAAATTCACGAAATACAAAATC
TGCTAAAGAAATGGAAGGGGAAACTCATTTTAGCATGGCCTTTGAAAGAT
ACTTTTTTGGAAAGCACTCCGCTTATAGGGAGAGAACAATTCTGGGAGTA
TTATTGACCATCTTGTTGATTTCTTTGATCGTTTTGGTGATTTATGTTTA
CGAACGAATGAAAGAATCGAATGAATATTATGATCGTGAAATTCATTATT
TGAGAAACAAGATTGAGAGTAGAGATCTTGAATATGCTGAAAAGAACCCC
AAATTATCGAATTCGAAGTCAGCTTATACAGGACGCGAAAAAAAGGCTGG
AACTTCTTTCGCTTTTGATAAGGTAGGTTGCGAATATATGAAAATCTTTC
TGTAGTCCCTATAACAGTCAGTGAGTCTTTTGATTAAAAGTTGGCATAAT
GCCAAGACTCTGTTTTGATATCATAACAACAAAAGATTTCATTGACTGTA
TGCATACTATAATTACGAATCAACAAATAGTAAGATTCCCTGCAGGAAAT
GACACTAAAGGACTGTTGTTATTGTTCTTATAATAACATAATTTTAATCA
CAAAATTTGATATGGTTTCCGCATAAATTATGTTAATTATTATTCAATCA
ACATATGAAGTTCGAATCAACCGCCCTTATTTTAAGCACCCTTTGTAAGA
ATATTGAAAGTTTTAAGAATATTGTCAATAATTTTAGAGAAGTGTTTCAG
ATAACTCTGATAGTAATTAATAAACAATCAACAAAAAAGAGTTCAAAATT
CTGTATTTCAAACAAATTTATGCCCGTTAAAGAATTGAACTTCTAGAAAT
TCGTGTACGAACAAATTTTCTTAAAAACAGCAATTGATACCTTAACAGGT
CAAAACATCACAGCACGAAACCTTAGCCGTATTTGCATTCAAAATAAAAC
AGATCCACAGGTTATCAGCTTGCATTTTGACATGTGATTTAATTTCAAAG
GTCACTTTAACTTTAACTCAATTTTCCCTCAATCAATTTAAAATACAAAA
ACTCAGCAATAAAATTGACAAAAAGTGAAAGTAATGAAGTTACTGCAAAA
ACCCTTTGGAAACGCCCTCTAAAATTTCTACCCAATGAAAGATTATGACT
ATAGGGGAAGAAAGGAAACTATTGGTCAAGTCAGATCAATCATCATCCTT
CGACCTAGGTCCGAATGGTCAGATCAGATCAGATCAGTCAGATCAATAAG
GCGTTCTATTACAGTTTGGCTGAAAAAGCGTGGCTTAAATTATCAAAATG
ACCGATTCTTAATTTACAGGGTAATGACAATTTTGGCAAAGTTATGATCA
AGGTTGTTGGTAGTGGGGGTTTAGACAAAAGCCAAACCGATACAGCACTC
AATCACTGGCAAGAAAATCTACGACAAGGAAACATCAGTTTTTACCAAGG
TCGAGAAGTCATTATCAAAATCGCTGGCTACTACCTGATACAAGTTAGGG
TAGGTATCATAGCTTTTTTAAATCTAATGCCGGTTTTCATGGTGTGAATT
TTATGGCTTAAAAAAAATTTCAAACGCAATTTCTTTGTTTTTTTATTTTT
TTACAGATGTTTTTCAAGGGCAATGAGAATTACGCTGGACAACATTTAGA
TTATGGTGTGGTCAGAAAAGGTTTACATAAAGAAACAATTTTCATTAGCT
CTGCAACTCGACCGAAAGATATTTGTGGGAGAGCATGCTCCCTGTCTATC
TCAGAGATTGTGCGTTTGGATGAAGGAGACATGTTGAGCATCCAGACAAA
AAAGAGCGGGCAGACCTTTGGCATGTATAAAGATAAAGCAAGTTTCGGTG
TTTGTAAACTCAATTAACCAATGGAAATGTAGCACGGGAATCACATGACT
CGATTCCAGTCTCTTTTTAAAGGATTTTCTTTACACGGCTGAGGTTTCAT
TCGGCGCAAAAATCAATTTTTTATTAATAAGAGCAAAGAACTAAAACGAA
AACGAAAACAATAAAAAAAAAGAAATTCAAACTTTTCATGCTCGCTTACC
CGAGCCGCACTGATGAGTCCTGGGGAGGACGAAACACGTGTCTGCGGATA
GATATGTTGTTTACAATTTTTTTAATTTTTAAGTTCTTTAATATTTTTCA
TATTACTGCTGTGTAGGAATAGGAAGTAGCGATTTTTCTCATAATTTCTA
ATTTTTTTATAGATTTAAAATCAAGCATCAATTCTTTAAGCATCAATTTT
TCATACATCAACTTTTATAGATTTAAAACCAAACATTATTTTAATGTACA
TAGAAAATATTCAGACGTCCGAGGAAAAGCCAACTTTTTTTCTCGGACAC
CCTGGATGATAGTTAGAATATCTGTTT Coding sequence (CDS) from alignment at scaffold_361:1038992..1041668- >TCONS_00062032 ID=TCONS_00062032|Name=TCONS_00062032|organism=Clytia hemisphaerica|type=CDS|length=2790bp|location=Sequence derived from alignment at scaffold_361:1038992..1041668- (Clytia hemisphaerica)
ATGTTTTTCAAGGGCAATGAGAATTACGCTGGACAACATTTAGATTATGG
TGTGGTCAGAAAAGGTTTACATAAAGAAACAATTTTCATTAGCTCTGCAA
CTCGACCGAAAGATATTTGTGGGAGAGCATGCTCCCTGTCTATCTCAGAG
ATTGTGCGTTTGGATGAAGGAGACATGTTGAGCATCCAGACAAAAAAGAG
CGGGCAGACCTTTGGCATGTATAAAGATAAAGCAAGTTTCGGTGTTTGTA
AACTCAATTAAGGTAATGACAATTTTGGCAAAGTTATGATCAAGGTTGTT
GGTAGTGGGGGTTTAGACAAAAGCCAAACCGATACAGCACTCAATCACTG
GCAAGAAAATCTACGACAAGGAAACATCAGTTTTTACCAAGGTCGAGAAG
TCATTATCAAAATCGCTGGCTACTACCTGATACAAGTTAGGATGGATACC
ATTCAAGAGAACCAGGCAATCAAGACATCCCTAATCTCACAAAGGGATGA
ACGAGCAAGCACCTCCAGCACTGGCAGCGATACGGTTCCCTTGGTGAGAG
ATTGCGGAAAAGAGGACTCCAGTTTCATAGATGTGGAAAATTCACGAAAT
ACAAAATCTGCTAAAGAAATGGAAGGGGAAACTCATTTTAGCATGGCCTT
TGAAAGATACTTTTTTGGAAAGCACTCCGCTTATAGGGAGAGAACAATTC
TGGGAGTATTATTGACCATCTTGTTGATTTCTTTGATCGTTTTGGTGATT
TATGTTTACGAACGAATGAAAGAATCGAATGAATATTATGATCGTGAAAT
TCATTATTTGAGAAACAAGATTGAGAGTAGAGATCTTGAATATGCTGAAA
AGAACCCCAAATTATCGAATTCGAAGTCAGCTTATACAGGACGCGAAAAA
AAGGCTGGAACTTCTTTCGCTTTTGATAAGATGTTTTTCAAGGGCAATGA
GAATTACGCTGGACAACATTTAGATTATGGTGTGGTCAGAAAAGGTTTAC
ATAAAGAAACAATTTTCATTAGCTCTGCAACTCGACCGAAAGATATTTGT
GGGAGAGCATGCTCCCTGTCTATCTCAGAGATTGTGCGTTTGGATGAAGG
AGACATGTTGAGCATCCAGACAAAAAAGAGCGGGCAGACCTTTGGCATGT
ATAAAGATAAAGCAAGTTTCGGTGTTTGTAAACTCAATTAAGGTAATGAC
AATTTTGGCAAAGTTATGATCAAGGTTGTTGGTAGTGGGGGTTTAGACAA
AAGCCAAACCGATACAGCACTCAATCACTGGCAAGAAAATCTACGACAAG
GAAACATCAGTTTTTACCAAGGTCGAGAAGTCATTATCAAAATCGCTGGC
TACTACCTGATACAAGTTAGGATGGATACCATTCAAGAGAACCAGGCAAT
CAAGACATCCCTAATCTCACAAAGGGATGAACGAGCAAGCACCTCCAGCA
CTGGCAGCGATACGGTTCCCTTGGTGAGAGATTGCGGAAAAGAGGACTCC
AGTTTCATAGATGTGGAAAATTCACGAAATACAAAATCTGCTAAAGAAAT
GGAAGGGGAAACTCATTTTAGCATGGCCTTTGAAAGATACTTTTTTGGAA
AGCACTCCGCTTATAGGGAGAGAACAATTCTGGGAGTATTATTGACCATC
TTGTTGATTTCTTTGATCGTTTTGGTGATTTATGTTTACGAACGAATGAA
AGAATCGAATGAATATTATGATCGTGAAATTCATTATTTGAGAAACAAGA
TTGAGAGTAGAGATCTTGAATATGCTGAAAAGAACCCCAAATTATCGAAT
TCGAAGTCAGCTTATACAGGACGCGAAAAAAAGGCTGGAACTTCTTTCGC
TTTTGATAAGATGTTTTTCAAGGGCAATGAGAATTACGCTGGACAACATT
TAGATTATGGTGTGGTCAGAAAAGGTTTACATAAAGAAACAATTTTCATT
AGCTCTGCAACTCGACCGAAAGATATTTGTGGGAGAGCATGCTCCCTGTC
TATCTCAGAGATTGTGCGTTTGGATGAAGGAGACATGTTGAGCATCCAGA
CAAAAAAGAGCGGGCAGACCTTTGGCATGTATAAAGATAAAGCAAGTTTC
GGTGTTTGTAAACTCAATTAAGGTAATGACAATTTTGGCAAAGTTATGAT
CAAGGTTGTTGGTAGTGGGGGTTTAGACAAAAGCCAAACCGATACAGCAC
TCAATCACTGGCAAGAAAATCTACGACAAGGAAACATCAGTTTTTACCAA
GGTCGAGAAGTCATTATCAAAATCGCTGGCTACTACCTGATACAAGTTAG
GATGGATACCATTCAAGAGAACCAGGCAATCAAGACATCCCTAATCTCAC
AAAGGGATGAACGAGCAAGCACCTCCAGCACTGGCAGCGATACGGTTCCC
TTGGTGAGAGATTGCGGAAAAGAGGACTCCAGTTTCATAGATGTGGAAAA
TTCACGAAATACAAAATCTGCTAAAGAAATGGAAGGGGAAACTCATTTTA
GCATGGCCTTTGAAAGATACTTTTTTGGAAAGCACTCCGCTTATAGGGAG
AGAACAATTCTGGGAGTATTATTGACCATCTTGTTGATTTCTTTGATCGT
TTTGGTGATTTATGTTTACGAACGAATGAAAGAATCGAATGAATATTATG
ATCGTGAAATTCATTATTTGAGAAACAAGATTGAGAGTAGAGATCTTGAA
TATGCTGAAAAGAACCCCAAATTATCGAATTCGAAGTCAGCTTATACAGG
ACGCGAAAAAAAGGCTGGAACTTCTTTCGCTTTTGATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062032-exon-scaffold_361-1575043694:1040997..1041668 | TCONS_00062032-exon-scaffold_361-1575043694:1040997..1041668 | Clytia hemisphaerica | exon |
| TCONS_00062032-exon-scaffold_361-1575043694:1039870..1040049 | TCONS_00062032-exon-scaffold_361-1575043694:1039870..1040049 | Clytia hemisphaerica | exon |
| TCONS_00062032-exon-scaffold_361-1575043694:1038992..1039762 | TCONS_00062032-exon-scaffold_361-1575043694:1038992..1039762 | Clytia hemisphaerica | exon |
| TCONS_00062032-exon-scaffold_361-1510915933:1040997..1041668 | TCONS_00062032-exon-scaffold_361-1510915933:1040997..1041668 | Clytia hemisphaerica | exon |
| TCONS_00062032-exon-scaffold_361-1510915933:1039870..1040049 | TCONS_00062032-exon-scaffold_361-1510915933:1039870..1040049 | Clytia hemisphaerica | exon |
| TCONS_00062032-exon-scaffold_361-1510915933:1038992..1039762 | TCONS_00062032-exon-scaffold_361-1510915933:1038992..1039762 | Clytia hemisphaerica | exon |
| TCONS_00062032-exon-scaffold_361-1491911889:1040997..1041668 | TCONS_00062032-exon-scaffold_361-1491911889:1040997..1041668 | Clytia hemisphaerica | exon |
| TCONS_00062032-exon-scaffold_361-1491911889:1039870..1040049 | TCONS_00062032-exon-scaffold_361-1491911889:1039870..1040049 | Clytia hemisphaerica | exon |
| TCONS_00062032-exon-scaffold_361-1491911889:1038992..1039762 | TCONS_00062032-exon-scaffold_361-1491911889:1038992..1039762 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1038992..1041668 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008983 | Tumour_necrosis_fac-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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