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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062022 ID=TCONS_00062022|Name=TCONS_00062022|organism=Clytia hemisphaerica|type=transcript|length=2557bpRun BLAST on NCBI protein sequence of TCONS_00062022-protein >TCONS_00062022-protein ID=TCONS_00062022-protein|Name=TCONS_00062022-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp MAESIPNMAQKIETREDEEQGKKFHETVDLLLAAGYFRARIKGLSPFDKVRun BLAST on NCBI transcript from alignment at scaffold_361:880866..896054- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062022 ID=TCONS_00062022|Name=TCONS_00062022|organism=Clytia hemisphaerica|type=transcript|length=15189bp|location=Sequence derived from alignment at scaffold_361:880866..896054- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_361:880866..896054- >TCONS_00062022 ID=TCONS_00062022|Name=TCONS_00062022|organism=Clytia hemisphaerica|type=CDS|length=7872bp|location=Sequence derived from alignment at scaffold_361:880866..896054- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00062022 vs. Swiss-Prot (Human)
Match: CCD93 (Coiled-coil domain-containing protein 93 OS=Homo sapiens GN=CCDC93 PE=1 SV=2) HSP 1 Score: 333.569 bits (854), Expect = 3.740e-102 Identity = 170/313 (54.31%), Postives = 232/313 (74.12%), Query Frame = 3
Query: 159 IETREDEEQGKKFHETVDLLLAAGYFRARIKGLSPFDKVVGGMTWCITTCDFDVDVDLLFQENSTIGQKIALTEKIVAVLPKMKCPHRIEPHQIQGLDFIHIFPVIQWLVKRAIEVREELGDKIREYSINQFHKSYSMPKDEEAKEKEFLSLDAVKTFKESYKPKRMFKKPSKFAK-ADEDTQVQSTLLEYGQRFGFSGSKANKEETEAKQKAIAAGLV---KVKGDESAENQXXXXXXXXXXMEGMSE-TDIQQMISSQAVGSIVGMKSEEISQIAKDYLQRQAELEQEASDMKAGKSGGXRSQKITCRDKQ 1082
+ETREDEEQ K E ++LL+AAGYFRARIKGLSPFDKVVGGMTWCITTC+FDVDVDLLFQENSTIGQKIAL+EKIV+VLP+MKCPH++EPHQIQG+DFIHIFPV+QWLVKRAIE +EE+GD IR YS++QF K+YS+P+D++ +++ ++ V E YKP+R +K+ + DE++++ +TLLEYG+R+GFS ++ E+ E K+ A+ AGL K E E + EE++++ LM M+ + + +++ +VG IVG+ S EI QI +Y ++Q+EL E S K G S R +K+ +KQ
Sbjct: 15 VETREDEEQNVKLTEILELLVAAGYFRARIKGLSPFDKVVGGMTWCITTCNFDVDVDLLFQENSTIGQKIALSEKIVSVLPRMKCPHQLEPHQIQGMDFIHIFPVVQWLVKRAIETKEEMGDYIRSYSVSQFQKTYSLPEDDDFIKRKEKAIKTVVDLSEVYKPRRKYKRHQGAEELLDEESRIHATLLEYGRRYGFS-RQSKMEKAEDKKTALPAGLSATEKADAHEEDELRAAEEQRIQSLMTKMTAMANEESRLTASSVGQIVGLCSAEIKQIVSEYAEKQSELSAEESPEKLGTSQLHR-RKVISLNKQ 325 HSP 2 Score: 241.891 bits (616), Expect = 9.991e-69 Identity = 149/345 (43.19%), Postives = 222/345 (64.35%), Query Frame = 2
Query: 1049 QIAKDYLQRQAELEQEASDMKAGKSGGLQTHKRHVTALEKAITAEQEKLQKANTELGEIENEVDETREVXXXXXXXXXXLDVETEKLKELESEQTKSTLSKLQSLVALNESLKKQEQEFKAHCKVELKEIEEKMSKLEA-----------IVNEGDNTEAERMRV---INEQFDNDTEKLRKMRLALAKRNREIASLQWKIDDVPTRAELKQYQSRFVELYNQFGSTHKETKQFYTLYNTLDDTKLYLEKEVGYLNSIHDTFEHASQGSDTSKEEFLKQLEKINQGVKATXXXXXXXXXXXXXXRYACNETLMELVEKQREYYKTVRDFQEECKKAEILLSKLKA 2041
QI +Y ++Q+EL E S K G S Q H+R V +L K I + + L++ ++ +E ++ + Y EKLD E L+++ES+ S L L++LVA+NE+LK QEQEFKAHC+ E+ +++++ L+A E T M ++ +++ + EKL K+RL A+RNREIA L KID+VP+RAEL QYQ RF+ELY Q + HKETKQF+TLYNTLDD K+YLEKE+ LNSIH+ F A S ++++FL+Q+E+I +G+K + K++KK ++ K +R N+ +EL+EKQR Y+KTV++F+EE +K E+LLSK+KA
Sbjct: 288 QIVSEYAEKQSELSAEESPEKLGTS---QLHRRKVISLNKQIAQKTKHLEELRASHTSLQARYNEAKKTLTELKTYSEKLDKEQAALEKIESKADPSILQNLRALVAMNENLKSQEQEFKAHCREEMTRLQQEIENLKAERAPRGDEKTLSSGEPPGTLTSAMTHDEDLDRRYNMEKEKLYKIRLLQARRNREIAILHRKIDEVPSRAELIQYQKRFIELYRQISAVHKETKQFFTLYNTLDDKKVYLEKEISLLNSIHENFSQA-MASPAARDQFLRQMEQIVEGIKQSRMKMEKKKQENKMRRDQLNDQYLELLEKQRLYFKTVKEFKEEGRKNEMLLSKVKA 628 The following BLAST results are available for this feature:
BLAST of TCONS_00062022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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