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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062017 ID=TCONS_00062017|Name=TCONS_00062017|organism=Clytia hemisphaerica|type=transcript|length=1598bp
ACATCAACCACAGATGGAGATCCAGGGATAATTAATCTTGCATCGAGACA
GGTCAACATCGAATCCATGTTTTACAAGCGAGATGAAGGAGAGAAGATCA
ACACCGTGGCTCATGAAATATCACATTCAGCACTACAAACATCAGATTAT
TTGCCACAGTTTATGaatgaAACAACCAACGAACTTCAACCTACAAACAC
ATCAAAAGATCAAACAATCTATGGAAAAAAGAAGGTTGAAAAGGTTGCTG
AACTGAATCTCGGTGGTAATATAGGTGACTGTCATGGATATTTGGCAGAA
AACCTTTACCGCAAAAAATACATAGGGCCAATGGGAGAAAAAGGGCGATT
TGACAACATCGCAAATGTGATCGGCTGCAAAGTCAATAAAATGCGCGCAA
AGAGGCTTCAGAAAGTTGGTGCTTATATCAAGCTCGATGGTAAAGATGTT
GTAAAGCCAGGATCAAGTTCTTGTCCAAATTGGGATACACAGTACACTTC
TACGGGAAAAGTAAAACGTACAAAGAAAGGAAAAGTTCGAGTTAAAAAGG
CACACAGGTCAAGAAGAAAGAACGAAAACGCTATTGGACATCCTAAGCTA
ACAGCTATTCGTCAACCAGGGAAACGTAAAGTTCCGAAGAAACCTCATTT
CGCTTTAGATGATGTTTACTTCCACAAGCTTAATAACAGCGTAGGTGGCG
TCGGCTCGAAAATTGGTAGCTGCTCCGTAAAGCAAGAGAAAGAAAAAGCT
GGTCAGATTGAAAAATCGAGTCTTGGCAAGAAAGACGAGAAAAGTGCCAA
AGAAGAAAACACCATTGTAGATCTCGTTCATCAAATGTCTCTGGAAGCTG
GTTTAAAGATATCAGAGGATGGTGTCAAGCGTGTTGTCCATCATAAACTG
GAGATGACAGAGGAGGGAGGAGGAGGCGGAGGGGGCGGAATCTCAGACGA
AGAGGATGAGCAAGAAAAAGAGCTTTGCAGATTCTGTAAACCAAAAGGAT
ATCCATGTTGTATGAAATGTTTGACCGGTCAGAGCTCGAAGAGAATTCGA
AGTTTTGGTAATAACATTCatggttttgaaaattaatttcttttgcgctg
ttttcattttataaagAAATCAATGTACAATTTGTTCAACGTATCAACTT
CTTTTAGCATTCTGTATTATTTTAAAGTATTGAATATCGAAGtccttatt
tttattattaaagtTTTTATTATAAAGTATTCAATAAGTGGCGAATGTGA
TGATTTAACAAGCTTGTTCAGCTGATTCCGTCAAAGGCGCCGCCATCTTG
CCTGAGATCAAAACTAACTGCCCTGGCTTCTGATGTctacataaaaaatg
acgttatgtTTGCTTCGGCCAATCACGACCATCAACGGACTAGTCCTCTT
ACGGAGCAGTGAACTTTAGAGTTCATACATGTCATGCGCGATCTTCCTGG
TGATTattaatattcattttttttaataataaagtATTCCATAGCCAAAC
TATTATTTTTTGTACattggaaaatttatttttggagGTCTATGTTAAGC
AAGCGTTCATGTGTTTTAGGCTGTGTTGTGTAATACATTCTCTTTTCC Run BLAST on NCBI transcript from alignment at scaffold_361:814692..817096- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062017 ID=TCONS_00062017|Name=TCONS_00062017|organism=Clytia hemisphaerica|type=transcript|length=2405bp|location=Sequence derived from alignment at scaffold_361:814692..817096- (Clytia hemisphaerica)
ACATCAACCACAGATGGAGATCCAGGGATAATTAATCTTGCATCGAGACA
GGTCAACATCGAATCCATGTTTTACAAGCGAGATGAAGGAGAGAAGATCA
ACACCGTGGCTCATGAAATATCACATTCAGCACTACAAACATCAGATTAT
TTGCCACAGTTTATGGTGAGTCCAGCTTCAAAACCTCCAAACCATTAACC
CTTACGTGTTATCTTTTTAAATCTTTTTCTTTTAGTATCGGAATTTGGGT
CGAAATTATTGAACTCAAGGGAAACGAGGGAAACGATTGATACCATCGAA
TAGAGCATAAAGTGCTGCTAGTTTGCATACCATTGACTTAGATTTCTCAA
TCTCTGATTAGTATCTTCATATGGCCGTTTATCTTCGTGTGTTTGAGTAT
GGAACCCGAGCCCATCATCTGTGATCAGTGGATACAATTGCATGAATAGT
TGAAGACCGCAATCAATCCAATCTATATATTGAGACTTGCAGATTCTTAC
TACGTTTGCTCTTAATTGTTTTTTTTAGAATGAAACAACCAACGAACTTC
AACCTACAAACACATCAAAAGATCAAACAATCTATGGAAAAAAGAAGGTT
GAAAAGGTTGCTGAACTGAATCTCGGTGGTAATATAGGTGACTGTCATGG
ATATTTGGCAGAAAACCTTTACCGCAAAAAATACATAGGGCCAATGGGAG
AAAAAGGGCGATTTGACAACATCGCAAATGTGATCGGCTGCAAAGTCAAT
AAAATGCGCGCAAAGAGGCTTCAGAAAGTTGGTGCTTATATCAAGCTCGA
TGGTAAAGATGTTGTAAAGCCAGGATCAAGTTCTTGTCCAAATTGGGATA
CACAGTACACTTCTACGGGAAAAGTAAAACGTACAAAGAAAGGAAAAGTT
CGAGTTAAAAAGGCACACAGGTCAAGAAGAAAGAACGAAAACGCTATTGG
ACATCCTAAGCTAACAGCTATTCGTCAACCAGGGAAACGTAAAGTTCCGA
AGAAACCTCATTTCGCTTTAGATGATGTTTACTTCCACAAGCTTAATAAC
AGCGTAGGTGGCGTCAGCTCGAAAATTGGTAGCTGCTCNCATGGATATTT
GGCAGAAAACCTTTACCGCAAAAAATACATAGGGCCAATGGGAGAAAAAG
GGCGATTTGACAACATCGCAAATGTGATCGGCTGCAAAGTCAATAAAATG
CGCGCAAAGAGGCTTCAGAAAGTTGGTGCTTATATCAAGCTCGATGGTAA
AGATGTTGTAAAGCCAGGATCAAGTTCTTGTCCAAATTGGGATACACAGT
ACACTTCTACGGGAAAAGTAAAACGTACAAAGAAAGGAAAAGTTCGAGTT
AAAAAGGCACACAGGTCAAGAAGAAAGAACGAAAACGCTATTGGACATCC
TAAGCTAACAGCTATTCGTCAACCAGGGAAACGTAAAGTTCCGAAGAAAC
CTCATTTCGCTTTAGATGATGTTTACTTCCACAAGCTTAATAACAACGTA
GGTGGCGTCGGCTCGAAAATTGGTAGCTGCTCCGTAAAGCAAGAGAAAGA
AAAAGCTGGTCAGATTGAAAAATCGAGTCTTGGCAAGAAAGACGAGAAAA
GTGCCAAAGAAGAAAACACCATTGTAGATCTCGTTCATCAAATGTCTCTG
GAAGCTGGTTTAAAGATATCAGAGGATGGTGTCAAGCGTGTTGTCCATCA
TAAACTGGAGATGACAGAGGAGGGAGGAGGAGGCGGAGGGGGCGGAATCT
CAGACGAAGAGGATGAGCAAGAAAAAGAGCTTTGCAGATTCTGTAAACCA
AAAGGATATCCATGTTGTATGAAATGTTTGACCGGTCAGAGCTCGAAGAG
AATTCGAAGTTTTGGTAATAACATTCATGGTTTTGAAAATTAATTTCTTT
TGCGCTGTTTTCATTTTATAAAGAAATCAATGTACAATTTGTTCAACGTA
TCAACTTCTTTTAGCATTCTGTATTATTTTAAAGTATTGAATATCGAAGT
CCTTATTTTTATTATTAAAGTTTTTATTATAAAGTATTCAATAAGTGGCG
AATGTGATGATTTAACAAGCTTGTTCAGCTGATTCCGTCAAAGGCGCCGC
CATCTTGCCTGAGATCAAAACTAACTGCCCTGGCTTCTGATGTCTACATA
AAAAATGACGTTATGTTTGCTTCGGCCAATCACGACCATCAACGGACTAG
TCCTCTTACGGAGCAGTGAACTTTAGAGTTCATACATGTCATGCGCGATC
TTCCTGGTGATTATTAATATTCATTTTTTTTAATAATAAAGTATTCCATA
GCCAAACTATTATTTTTTGTACATTGGAAAATTTATTTTTGGAGGTCTAT
GTTAAGCAAGCGTTCATGTGTTTTAGGCTGTGTTGTGTAATACATTCTCT
TTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062017-exon-scaffold_361-1575043694:816932..817096 | TCONS_00062017-exon-scaffold_361-1575043694:816932..817096 | Clytia hemisphaerica | exon |
| TCONS_00062017-exon-scaffold_361-1575043694:816040..816568 | TCONS_00062017-exon-scaffold_361-1575043694:816040..816568 | Clytia hemisphaerica | exon |
| TCONS_00062017-exon-scaffold_361-1575043694:814692..815595 | TCONS_00062017-exon-scaffold_361-1575043694:814692..815595 | Clytia hemisphaerica | exon |
| TCONS_00062017-exon-scaffold_361-1510915933:816932..817096 | TCONS_00062017-exon-scaffold_361-1510915933:816932..817096 | Clytia hemisphaerica | exon |
| TCONS_00062017-exon-scaffold_361-1510915933:816040..816568 | TCONS_00062017-exon-scaffold_361-1510915933:816040..816568 | Clytia hemisphaerica | exon |
| TCONS_00062017-exon-scaffold_361-1510915933:814692..815595 | TCONS_00062017-exon-scaffold_361-1510915933:814692..815595 | Clytia hemisphaerica | exon |
| TCONS_00062017-exon-scaffold_361-1491911889:816932..817096 | TCONS_00062017-exon-scaffold_361-1491911889:816932..817096 | Clytia hemisphaerica | exon |
| TCONS_00062017-exon-scaffold_361-1491911889:816040..816568 | TCONS_00062017-exon-scaffold_361-1491911889:816040..816568 | Clytia hemisphaerica | exon |
| TCONS_00062017-exon-scaffold_361-1491911889:814692..815595 | TCONS_00062017-exon-scaffold_361-1491911889:814692..815595 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:814692..817096 - |
Blast
The following BLAST results are available for this feature:
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