TCONS_00062003 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062003
Unique NameTCONS_00062003
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062003 ID=TCONS_00062003|Name=TCONS_00062003|organism=Clytia hemisphaerica|type=transcript|length=1687bp
GTAATTAAAACCATATTAAATTaacctatttttcatttttgatttaaaaa
ttcttcatttGAATGAACTTGCTAACTCAACAGCTGAATCAACAAGCTGC
ACGATGGAGGGTCAAATAGTAAGGTTTTCTTTGCTTCAGACCTTATAAAG
TACTCCATCTTGGAGTTTTACTCatatttcttttcattgttAAGTGGGAT
TCGTCGGGGTTTTTGGTTTAGGATTATCTTTTTCCTTGCTATCATTCAGT
GTTGAAGTTTCTACAGGTTGAAACAACAAGAAAGGTTTTTGGAAATGATG
AAATCGTTGGTAATTGGACTTCTTATCCTTTCTTTGGTATTCATGAAGGA
ATCGTCAGCAGGGAAATCATTGCAAGACTCCAAACTTGAAGATCTACCAA
GAGCGGTCGCCGAAGGGGACGACGGGCGAGACACGTGCGATCACACTGAA
TATGGATGTTGCCCAAATGGCGTCGCGTCCGCTTCTGGACCGCACTACAA
AGGGTGTGGAGAAGAGGATTAATTGAAGGCTGTCAATTAATACAAACCTA
CActtGGACTACACATGGTTTATGAAATAACTTGACAATtaatataaata
tataaatttttgtaataaaatatgattattttgtgataaattcaaataaa
taacagaccggaataaaacaaaatacaaatcTTTAAATCCAAGGACTTCT
TCATTGCCACATTTAGGATGAGTGATACCTCATTGGGAGGAAAAACTACC
CTTGACACAAATTGTTCTTGATTGACATATGAGGATCCTATAAGGCCATC
AGCACTTTCCGGCAACAGATAGTGTTTATAAGTAGTAACAAAGTTTTCTA
GTTTGCGCACGTGGCGTCTAAAGTTTCCATATTGAACATATCTACAACAA
CATGATTGTATACCAGAAAAATAACAGTGATTAACAAATTCAAACACTTT
TACTTGTTGAAATGTCTTCACAAGGAAGCAAAAACTTCACACAAGGTTTT
TTTTAACGTTTCGATCTTTAATCTTCAATGGTATATATCAAAGTAATGAC
AAATTCGATATTAGCCACACCAAATACAAGCTTCGATCATTTTCAAAGTA
GATACTCACAAAAGAAATTTCCTCAAAGGTATGGAATTATTTTGAGCGTA
AGAAACCACATCATTCCAAGTGACAAGGTATTCATAGGGATGTATCCCTG
TGTTggatggaaaaaaattcaaaacatctcTCCCTTGAAGTTCTTGTCGC
AAGAGGTAATAGTCTGAAATGTCCCAATTATATGTACCCTTATTCCGTTG
ACCAAAGTGTAAAAGTGATTCAATACTGGTCATTCCTAGCACATCAATGG
TCATACTACGATGTGATTTTCCGTTGACGTAAACAGATAAAAGTCTTCTC
ATTGAAACACATAAATGTGTCCACCGATTCAAAGGAGAACGCAAATCGAC
GACCCTCGGCGTTCGAAAGGAAGGAAATTTAACTTGAAGATTTCCAGCCC
CGTCTACACTGAGTGAGAAGTCTGTATCTTTAGACTGTAGAATTTGAAGA
GTCGAATCTGAACTTCCTTTCTCAGCGCGTATCCAAAAACAAACAGATAG
AATAGAAGTTTGTTTGTCtttctcttcatctttgatggGCAGATTGTGTG
TTTTGTTACCGAGTTTCATCGAAAATGATGTATctag
Run BLAST on NCBI

transcript from alignment at scaffold_361:704056..706761-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062003 ID=TCONS_00062003|Name=TCONS_00062003|organism=Clytia hemisphaerica|type=transcript|length=2706bp|location=Sequence derived from alignment at scaffold_361:704056..706761- (Clytia hemisphaerica)
GTAATTAAAACCATATTAAATTAACCTATTTTTCATTTTTGATTTAAAAA
TTCTTCATTTGAATGAACTTGCTAACTCAACAGCTGAATCAACAAGCTGC
ACGATGGAGGGTCAAATAGTAAGGTTTTCTTTGCTTCAGACCTTATAAAG
TACTCCATCTTGGAGTTTTACTCATATTTCTTTTCATTGTTAAGTGGGAT
TCGTCGGGGTTTTTGGTTTAGGATTATCTTTTTCCTTGCTATCATTCAGT
GTTGAAGTTTCTACAGGTTGAAACAACAAGAAAGGTTTTTGGAAATGATG
AAATCGTTGGTAATTGGACTTCTTATCCTTTCTTTGGTATTCATGAAGGT
AAGAATTCCTCAATCAGTAAAAAATCATAATTCATCAAGGCTACAAAACC
AATCATTTTATATCTAACAATCATATCAAGGAATTTGTACCTGAATTTAT
TCGCAGAATACTAGAACCATTGTTCAAATATTTAAAAACCTCATTGCCTT
GGAAAAGGGTTCTTTCTAAACGAGTGTCTCATACGAACATCAAACTAAAA
CGCCCATACCCCAAAGGATAGCTCGGATAAACTTTGCATAGGCGTATGTA
TAGGGCGCCACAGGTAAAACGAGTAATCTGGAAGGGTTGATTTTTCGTAG
TTGAAAATAATCTGTAAGATTTTCGAGGAAATCTGCATGACTTCCTTTCT
TTGATTTTTTTCCATTTTTATTTTAGGAATCGTCAGCAGGGAAATCATTG
CAAGACTCCAAACTTGAAGATCTACCAAGAGGTATGACATATATCTGTGT
ACTGCGCAGTCACTCCCTGTGTATATCTATTATTTCTCAGCATCTTAATT
AATAATTAACCTAATTTTCCCGTATTAAGAAAGCCCATGAAATTCGTCAA
TTCAAGGCATCACTGCTAGACTGTCAAAGCTGATTCAACTGAGAAAAGGA
CTAAGAAACTCCTATCCCAAATGAGACGCTGTGATCAAATATTTGAATAT
ATTCATACTGAGAGGTAGAATTATTTACCAACTAAACCTTTTTATCTTCA
GCGGTCGCCGAAGGGGACGACGGGCGAGACACGTGCGATCACACTGAATA
TGGATGTTGCCCAAATGGCGTCGCGTCCGCTTCTGGACCGCACTACAAAG
GGTGTGGAGAAGAGGATTAATTGAAGGCTGTCAATTAATACAAACCTACA
GTAAGTTGATTTTTCAAATAGCAATTCGAGTACCACCGTGAGTGCAACAG
TTACTTTATAGTTATCTAGCTGAATTTAAAGCTGTAAAAGTAGACTGAAT
GAAATTTATCGCGATTGTCTCAATATCATAACTAAGTATGCAAAGAAGAA
CGCGTGAGAGCATGCTTAAGGTAGATCATTTTATTTCCGCATAAACTCCG
TTTTCAAGCTGTGTTTGCCTGGCATTCAATCCAAATCCAGGATTGATGAT
TACCATGGTTATTTTTTTCCTCGTTAAGTGCACGCTGAATAGAATGTAGA
TCAAAATTACGGGCTGCGATAGTCAAACATGAATGATAGTTTGATAAATT
CTATGTCATTTTTATTTTCAGCTTGGACTACACATGGTTTATGAAATAAC
TTGACAATTAATATAAATATATAAATTTTTGTAATAAAATATGATTATTT
TGTGATAAATTCAAATAAATAACAGACCGGAATAAAACAAAATACAAATC
TTTAAATCCAAGGACTTCTTCATTGCCACATTTAGGATGAGTGATACCTC
ATTGGGAGGAAAAACTACCCTTGACACAAATTGTTCTTGATTGACATATG
AGGATCCTATAAGGCCATCAGCACTTTCCGGCAACAGATAGTGTTTATAA
GTAGTAACAAAGTTTTCTAGTTTGCGCACGTGGCGTCTAAAGTTTCCATA
TTGAACATATCTACAACAACATGATTGTATACCAGAAAAATAACAGTGAT
TAACAAATTCAAACACTTTTACTTGTTGAAATGTCTTCACAAGGAAGCAA
AAACTTCACACAAGGTTTTTTTTAACGTTTCGATCTTTAATCTTCAATGG
TATATATCAAAGTAATGACAAATTCGATATTAGCCACACCAAATACAAGC
TTCGATCATTTTCAAAGTAGATACTCACAAAAGAAATTTCCTCAAAGGTA
TGGAATTATTTTGAGCGTAAGAAACCACATCATTCCAAGTGACAAGGTAT
TCATAGGGATGTATCCCTGTGTTGGATGGAAAAAAATTCAAAACATCTCT
CCCTTGAAGTTCTTGTCGCAAGAGGTAATAGTCTGAAATGTCCCAATTAT
ATGTACCCTTATTCCGTTGACCAAAGTGTAAAAGTGATTCAATACTGGTC
ATTCCTAGCACATCAATGGTCATACTACGATGTGATTTTCCGTTGACGTA
AACAGATAAAAGTCTTCTCATTGAAACACATAAATGTGTCCACCGATTCA
AAGGAGAACGCAAATCGACGACCCTCGGCGTTCGAAAGGAAGGAAATTTA
ACTTGAAGATTTCCAGCCCCGTCTACACTGAGTGAGAAGTCTGTATCTTT
AGACTGTAGAATTTGAAGAGTCGAATCTGAACTTCCTTTCTCAGCGCGTA
TCCAAAAACAAACAGATAGAATAGAAGTTTGTTTGTCTTTCTCTTCATCT
TTGATGGGCAGATTGTGTGTTTTGTTACCGAGTTTCATCGAAAATGATGT
ATCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038866XLOC_038866Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062003-exon-scaffold_361-1575043694:706414..706761TCONS_00062003-exon-scaffold_361-1575043694:706414..706761Clytia hemisphaericaexon
TCONS_00062003-exon-scaffold_361-1575043694:705981..706035TCONS_00062003-exon-scaffold_361-1575043694:705981..706035Clytia hemisphaericaexon
TCONS_00062003-exon-scaffold_361-1575043694:705562..705710TCONS_00062003-exon-scaffold_361-1575043694:705562..705710Clytia hemisphaericaexon
TCONS_00062003-exon-scaffold_361-1575043694:704056..705190TCONS_00062003-exon-scaffold_361-1575043694:704056..705190Clytia hemisphaericaexon
TCONS_00062003-exon-scaffold_361-1510915933:706414..706761TCONS_00062003-exon-scaffold_361-1510915933:706414..706761Clytia hemisphaericaexon
TCONS_00062003-exon-scaffold_361-1510915933:705981..706035TCONS_00062003-exon-scaffold_361-1510915933:705981..706035Clytia hemisphaericaexon
TCONS_00062003-exon-scaffold_361-1510915933:705562..705710TCONS_00062003-exon-scaffold_361-1510915933:705562..705710Clytia hemisphaericaexon
TCONS_00062003-exon-scaffold_361-1510915933:704056..705190TCONS_00062003-exon-scaffold_361-1510915933:704056..705190Clytia hemisphaericaexon
TCONS_00062003-exon-scaffold_361-1491911889:706414..706761TCONS_00062003-exon-scaffold_361-1491911889:706414..706761Clytia hemisphaericaexon
TCONS_00062003-exon-scaffold_361-1491911889:705981..706035TCONS_00062003-exon-scaffold_361-1491911889:705981..706035Clytia hemisphaericaexon
TCONS_00062003-exon-scaffold_361-1491911889:705562..705710TCONS_00062003-exon-scaffold_361-1491911889:705562..705710Clytia hemisphaericaexon
TCONS_00062003-exon-scaffold_361-1491911889:704056..705190TCONS_00062003-exon-scaffold_361-1491911889:704056..705190Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:704056..706761 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0240039	0.0468151	0.0271784	0.0706306	0.0647412	0	0	0.160767	0.0949446	0	0	0.11245	11.5983	9.28358	0.0796468	0.0591712	7.27324	6.62707	45.615	33.5589	19.8951	20.8034	8.33375	11.4103	13.866	15.0561	0.138679	0.562068	0.0799273	0.0602613
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013320ConA-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062003 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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