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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062000 ID=TCONS_00062000|Name=TCONS_00062000|organism=Clytia hemisphaerica|type=transcript|length=1567bp
CTTTGAATTTATATTTCTTGGCGATCTCCATAGCTGCAGGTAACCTTTGA
TAACGATATTCGAGCAAGGAACGTCcaatttttggatgaaaaatcATTAC
AGGTGGAAACATCCAGATATCTTGATCCCAAAATGAATGACCAAGATATT
CATATCCCATTGGAAGACTCCCTGTGGTGAAAAAGAAGGATGAACGAGTT
AAATAATTCCCTAAAGTTTCAGGTGTCCTTGATAATCATTGACCATTTCC
TTAGTTTTGAACTAGAATGTCAATCAAAAGATCACTTGCCAAGAAACTTG
TCAACGCTGTagagactcttaaaaaaaaaagcttaGACCGTATTCGAAGT
TCTGGCATGATGAAAACCATCTCCAACAGAGCAGAAATGCAGTAGTCAGC
TCGCACTTAAGTAAAACGATCTAATTGTTCAAAGTTTGCATTATGAAATA
ATTTATAGGCTTATTCTAACTAATCAATGCCGAAATAGTTTCATTTAAAG
TTGACGATTACCACGTTAAAATCTAACCTGGGCTTAGGCCAAGTGTCCAA
TCTTCCCTTACTGAGGAAAGGATGTtgtaaaaactggtaaaaacGGTTTG
TGAGAGGTAAAGATCATTCTCAATAGTGATGTTTCCTTCATCCCATAATT
TAGACCAAGTTTCAACATGTGATGGGAACAGTTCCATTGTATCGCCTAAT
TGTTTCGCTTGTTCGTAGTATGATAGAGCTGCCCTAATTGGGTCTTGTGA
ATCGAGGCTAGTAGCTATTGCTGTAATATAAAGATCTCTCCTTAGCCCGT
AATCCATGAGTTTGAAAGTTGGTATGTTTGTAAAGACAACAGCTACCGAA
ACATTTTGGGATGTCTCTGTTTCTGTTTGGTTGATATAACCAAACCACGA
GGTCCATTCTTCATTGGAAGAAACTGATTGGAAGTTAATATCACGTGACT
TGTTCCCAATGTTCGATAACACTGTGAAATTCAAAGTGTCCGTTGTTTTG
ACATTTGTTTCGATTTCAGTGATCAGTATATTTTTAAGGAGGCGGTGGGC
GTATGTTTTCTGATGTAGGGTGTAGGAAGGCGTATCGATGGTTTGAGCAA
AATATCCTCGCTCAGTATCTAAGAAGTACAACTGATTCTGCTCGTTAGTC
TCTTTCAGCCGATATTCTATTGCAACTGTTGAGGGAACACGAGCCCGGTG
CGTATGATCATAATACCAGTCCGAATCAAGTTTGCTTCTATGCCGCTTTG
TTCCTTTCAACCGATCATTTGGTGTGTCCGGAATAACGTTAGCCCGTCCG
TTAAAAACACCAGACACATGAACTTCATCGGACATAACAACCGTTCCAAG
ATAACCATTACCTACAGATGGCATAGATCTGAAGTTCAACTCTCCTTTCT
CCGTCCTTGGTAACGAATCAGTGACAATACACGTCGGAGTAGACTCAAAC
GATTCAGAGCAATGTTGTCCAGCTGTCAGAGGTACTAAACCCAAAGCTAT
TACAATGTAAAACATCGATAAAAGCGCCATGTTTACCTAAATACGCATGT
AAAAGCTACTCTCAGAC Run BLAST on NCBI transcript from alignment at scaffold_361:584448..586090- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062000 ID=TCONS_00062000|Name=TCONS_00062000|organism=Clytia hemisphaerica|type=transcript|length=1643bp|location=Sequence derived from alignment at scaffold_361:584448..586090- (Clytia hemisphaerica)
CTTTGAATTTATATTTCTTGGCGATCTCCATAGCTGCAGGTAACCTTTGA
TAACGATATTCGAGCAAGGAACGTCCAATTTTTGGATGAAAAATCATTAC
AGGTGGAAACATCCAGATATCTTGATCCCAAAATGAATGACCAAGATATT
CATATCCCATTGGAAGACTCCCTGTGGTGAAAAAGAAGGATGAACGAGTT
AAATAATTCCCTAAAGTTTCAGGTGTCCTTGATAATCATTGACCATTTCC
TTAGTTTTGAACTAGAATGTCAATCAAAAGATCACTTGCCAAGAAACTTG
TCAACGCTGTAGAGACTCTTAAAAAAAAAAGCTTAGACCGTATTCGAAGT
TCTGGCATGATGAAAACCATCTCCAACAGAGCAGAAATGCAGTAGTCAGC
TCGCACTTAAGTAAAACGATCTAATTGTTCAAAGTTTGCATTATGAAATA
ATTTATAGGCTTATTCTAACTAATCAATGCCGAAATAGTTTCATTTAAAG
TTGACGATTACCACGTTAAAATCTAACCTGGGCTTAGGCCAAGTGTCCAA
TCTTCCCTTACTGAGGAAAGGATGTTGTAAAAACTGGTAAAAACGGTTTG
TGAGAGGTAAAGATCATTCTCAATAGTGATGTTTCCTTCATCCCATAATT
TAGACCAAGTTTCAACATGTGATGGGAACAGTTCCATTGTATCGCCTAAT
TGTTTCGCTTGTTCGTAGTATGATAGAGCTGCCCTAATTGGGTCTTGTGA
ATCGAGGCTAGTAGCTATTGCTGTAATATAAAGATCTCTCCTTAGCCCGT
AATCCATGAGTTTGAAAGTTGGTATGTTTGTAAAGACAACAGCTACCGAA
ACATTTTGGGATGTCTCTGTTTCTGTTTGGTTGATATAACCAAACCACGA
GGTCCACTCTTCATTGGAAGAAACTGATTGGAAGTTAATATCACGTGACT
TGTTCCCANATATAACCAAACCACGAGGTCCATTCTTCATTGGAAGAAAC
TGATTGGAAGTTAATATCACGTGACTTGTTCCCAATGTTCGATAACACTG
TGAAATTCAAAGTGTCCGTTGTTTTGACATTTGTTTCGATTTCAGTGATC
AGTATATTTTTAAGGAGGCGGTGGGCGTATGTTTTCTGATGTAGGGTGTA
GGAAGGCGTATCGATGGTTTGAGCAAAATATCCTCGCTCAGTATCTAAGA
AGTACAACTGATTCTGCTCGTTAGTCTCTTTCAGCCGATATTCTATTGCA
ACTGTTGAGGGAACACGAGCCCGGTGCGTATGATCATAATACCAGTCCGA
ATCAAGTTTGCTTCTATGCCGCTTTGTTCCTTTCAACCGATCATTTGGTG
TGTCCGGAATAACGTTAGCCCGTCCGTTAAAAACACCAGACACATGAACT
TCATCGGACATAACAACCGTTCCAAGATAACCATTACCTACAGATGGCAT
AGATCTGAAGTTCAACTCTCCTTTCTCCGTCCTTGGTAACGAATCAGTGA
CAATACACGTCGGAGTAGACTCAAACGATTCAGAGCAATGTTGTCCAGCT
GTCAGAGGTACTAAACCCAAAGCTATTACAATGTAAAACATCGATAAAAG
CGCCATGTTTACCTAAATACGCATGTAAAAGCTACTCTCAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062000-exon-scaffold_361-1575043694:585190..586090 | TCONS_00062000-exon-scaffold_361-1575043694:585190..586090 | Clytia hemisphaerica | exon |
| TCONS_00062000-exon-scaffold_361-1575043694:584448..585113 | TCONS_00062000-exon-scaffold_361-1575043694:584448..585113 | Clytia hemisphaerica | exon |
| TCONS_00062000-exon-scaffold_361-1510915933:585190..586090 | TCONS_00062000-exon-scaffold_361-1510915933:585190..586090 | Clytia hemisphaerica | exon |
| TCONS_00062000-exon-scaffold_361-1510915933:584448..585113 | TCONS_00062000-exon-scaffold_361-1510915933:584448..585113 | Clytia hemisphaerica | exon |
| TCONS_00062000-exon-scaffold_361-1491911889:585190..586090 | TCONS_00062000-exon-scaffold_361-1491911889:585190..586090 | Clytia hemisphaerica | exon |
| TCONS_00062000-exon-scaffold_361-1491911889:584448..585113 | TCONS_00062000-exon-scaffold_361-1491911889:584448..585113 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:584448..586090 - |
Blast
BLAST of TCONS_00062000 vs. Swiss-Prot (Human)
Match: PGGHG (Protein-glucosylgalactosylhydroxylysine glucosidase OS=Homo sapiens GN=PGGHG PE=1 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 1.920e-18 Identity = 82/313 (26.20%), Postives = 128/313 (40.89%), Query Frame = -2
Query: 526 PTCIVTDSLPRTEKGELNFRSMPSVGNGYLGTVVMSDEVHVSGVFNGRANVIPDTPNDRLKGTKRHRSKLDSDWYYDHTHRARVPSTVAIEYRLKETNEQNQLYFLDTERGYFAQTIDTPSYTLHQKTYAHRLLKNILITEIETNVKTTDTLNFTVL--SNIGNKSRDINFQSVSSNEEWTSWFGYINQTETETSQNVSVAVVFTNIPTFKLMDYG--LRRDLYITAIATSLDSQDPIRAALSYYEQAKQLGDTMELFPSHVETWSKLWDEGNITIENDLYLSQTVFTSFYNILSSVREDWTL-----GLSPG 1437
PT SLP + R + +V N YLGT V D +HVSGV+NG G HR+ L S P V +E + + + LDT G F T++ P + Q YAHR L ++L + + T+L S +S D++ + +G+ E V +++T P + G R ++TA+ SQ +A L+ +A QL L+ +H + W++LW E + + L L Q + S Y +LS++ + GLSPG
Sbjct: 8 PTTFAAHSLPS------DPRLLATVTNAYLGTRVFHDTLHVSGVYNG-------------AGGDTHRAMLPS------------PLNVRLEAPAGMGEQLTETFALDTNTGSFLHTLEGPRFRASQCIYAHRTLPHVLAFRVSIARLAPGSGPITLLLRSAFSPESPDLDLHQGPDFQGARYLYGHTLTPEQPGGPQQEVHMLWTPAPPDLTLGEGEEARTWDFLTAVG---GSQAEAQACLT---EALQLQARGALYTAHAQAWAQLWVECGLDVVGPLQLRQALRGSLYYLLSALPQPKAPGYICHGLSPG 283
The following BLAST results are available for this feature:
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