TCONS_00061996 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061996
Unique NameTCONS_00061996
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1659

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061996 ID=TCONS_00061996|Name=TCONS_00061996|organism=Clytia hemisphaerica|type=transcript|length=1659bp
ATATAGACAACAACGctgaaaaaatgtttgaaaaattgaatattattttt
ccAGTGAGTTATCTGGCTATCATTTTCTCAAGTATTGCAACACTTTATTG
CTACCAATCTTCACGCGTTATTCATAAGCCAGAGGGAACAAAAATCTCAG
TCAATATCAGTTACATTCGTGTTAAATATATGACAGGTCATCGAATGGTC
GACCCCCCAATAAAGGCTTTAACAACAAACGATAAGGAAGGCTGCGTGAA
AGAGTGCTTATTAACAAGTGGAAAATGCCAGAGTATGAATCTCAAATTAA
CTTTGAGTGGATTTGATTGTGAAATTTTACAAACAGATATTTATACCTCA
AATAATCTGACCGCAGATGTAGGGTCTATCCATGTCGTTATTGTTaatgg
tTGTAGTAAAGATCCTTGTCAAAGAGAGGAGAATTGTGTACCAAACTACC
AGGATGACTCGTACGCATGCGTGAACATAAACGCACGAACGTGCAAAGAG
ATGAAAGATAGAAAGCCTTTAGCAACATCAGGATATTACAAGATCAATTT
GAACGGGAAAATGCGAGATGTTTACTGtgatatggacactgatcaTGGTG
GATGGATGATGTTGGCTAACTATACAAACAAATTTGCAAGCTCAACTGCA
ACTGAAATGACAATTGGTGACTTGGATTCATTTCTTCAGCTTCAAAATGG
AGATTTTCTATTGGATGGGGACACTATCTTCCGCAAATTCATTCTCAAAC
TCCAATCACAGAAATCAGGTTTTATTGTCACAAGCCAAACGTTGGAAGAA
CAATAAGCTTCGTCACAAACCATAATGCAGTTGGTGTTGAGCTAAAAGAA
TATATCTTAGGTCTCAATAATGGTGGGTTATGTAACCGTGCAATAGGTCG
AACCGAATCTGTCAGAACATTGGATGATGATACTAGCTTTCTATCACGTA
ATATTAACTGTTTTGGTGGAAGCAGCTGGTTCACACCAAATCAAAGACTT
TATGATCACCCAGTGTGGGCTGATTATTGGCCTAATGGTTTGAGCTCCAA
AGTTCATTTTGTTGTGTTGCCAAATCGTCTAGACTGTGATGATGGGACTC
AGGGTCAAGACACTAAAAAACCTGGCACTTTCAGAGTATACATACGATAA
TATGATATTGATCATCAAATTAGAGCATTCCCACAAAATCccaaaaatat
acaaacatTAGACATgagcttgaaaatgaaaagtttcatttAATCATAAA
CAATGAGATCTTTTCTTAGAGCAAGGATTTACGGTCAACTGATTTACAGT
ACCATACAAACTTATCaaacttaaaaactttacatatCGAATTAActaca
atattttttatttattttttcacacTTCTCACAATCTTGTTTCTATGCCT
AGTCCTCGGCCTATATAAAATCATAATATATTTACGAGATATTATTCATC
TAAGaatagtttatttatttcttactGTCTGCCATAATTTATCTAGGACG
ACTATCTTGCGAACAAGCCGTTATCCAGTTTAATTATTACTAATCGAAAA
AACTTCCAAACGTCATATCTCAGTATTCTGATTCCGAGCTTCACTTAGTT
TTCCTTATTCCTTCCGATTGAGTCCTTCTTCCCGTATCTGTTCGTGTtgt
tatttattt
Run BLAST on NCBI

transcript from alignment at scaffold_361:569288..572346-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061996 ID=TCONS_00061996|Name=TCONS_00061996|organism=Clytia hemisphaerica|type=transcript|length=3059bp|location=Sequence derived from alignment at scaffold_361:569288..572346- (Clytia hemisphaerica)
ATATAGACAACAACGCTGAAAAAATGTTTGAAAAATTGAATATTATTTTT
CCAGTGAGTTATCTGGCTATCATTTTCTCAAGTATTGCAACACTTTATTG
CTACCAATCTTCACGCGTTATTCATAAGCCAGAGGGAACAAAAATCTCAG
TCAATATCAGTTACATTCGTGTTAAATATATGACAGGTCATCGAATGGTC
GACCCCCCAATAAAGGCTTTAACAACAAACGATAAGGAAGGCTGCGTGAA
AGAGTGCTTATTAACAAGTGGAAAATGCCAGAGTATGAATCTCAAATTAA
CTTTGAGTGGATTTGATTGTGAAATTTTACAAACAGATATTTATACCTCA
AATAATCTGACCGCAGATGTAGGGTCTATCCATGTCGTTATTGTTGTAAG
TATCTTCATATATTAAAACTATAAAGCCATGCTGATATAGTTTTTAGAGT
TAATAGATTTCTAACAAAAGAAAGGTCTTTTTTTCGGATCTTAAAGAATT
TCTTTGAAGCCGGAAAAATCAATTTCATTTTACACAGAAAGGCCTAGATC
TCTTCAAAACTTTACGATGTATAGGCTGAAACGGGAATTTATTGAAACCG
TCTTTGTAATCGCCTAACACGGGCCTAACACGGTATTGTCTGTACAAAAA
CCCAATATCTACGGCTAATTTCAAAATTCATTGCGCTACGATAGTCGTGA
GATACACTCTGGTACAGAGTAAACACGGTAGAGCATTACACAATGCTTAA
GAAATAAATGAAAAAAATGAAAGGAAAGAAGAATAACATTTTTTCATAGA
CGGAAACCCGTTGATTCTTACCGAACTCCTCGTGTGAACTTCGTGAAATA
GGGGAACGGGAAATGTGGTCTAGAAAGAACTTAATAGCTAATTAAACGAA
AAAATTATTTTTCTTTGTTTTTTTTTAAAAGAATGGTTGTAGTAAAGATC
CTTGTCAAAGAGAGGAGAATTGTGTACCAAACTACCAGGATGACTCGTAC
GCATGCGTGAACATAAGTAAGTACCACATAACTAATTAATGGCCTAAAGT
TAGGGTTTTTATGACAATTACAATTTTGGAGAAAGTTGGACCTTGACTCT
GATCATGCCCGATCTTATTTCCTATATCAATACGCTTCATGAGAGCTTTA
AAAACCTTTATGCAAAGTCTTGGAACTTCATGTCGTCATGCGTTAGGCTG
CACTTAAAAAAAGAGTTTACTTTGAAGATTTCAACTTTTCAAAACAGCAG
GTAGTTGTAAAAGGGAAAGGGATAATATAATAGAAAATATAATTTCTTAA
GCTTAAGATAGAACAGGACAGGCAAGATACAGGTTTTGATATGAAGGTTT
GAAATTTTTGAAGAAAAAATAATTCTACTATAAAATGGCAATAAATATTT
TGGGTCGGCAGGTTTCGGGGTAAGTAGGTCGGGTGAAGACATTCAATACT
TTCTATTATTATCGATTCAAAACATTGGTTGAAACGATATGATCTTCAAA
TTAAAATTCGTTTGAGTTTCTTTTCTGTAGACGCACGAACGTGCAAAGAG
ATGAAAGATAGAAAGCCTTTAGCAACATCAGGATATTACAAGATCAATTT
GAACGGGAAAATGCGAGATGTTTACTGTGATATGGACACTGATCATGGTG
AGTACCGTAAAATATAATTCCTGTTTCACTTTGTTTTAGATACTATATAG
TTGAGTACTCTCGGGTACCTAATAGCCGTCCCCCCCCGCTTATTAATTTT
TGGGAAAATGTTTTTGAAAGGTCCCTCTTTTGTCCTAATTCTGCTGTATT
AGCCTCCTTTTCAAAAATTTTCCACCCAGGACATTTTTATTCCAACCCCT
CATGCTTATTAAGTTTTGAGATATGTTCTGCAGGATCCTCAATTTTATCT
TGACTCTGATCATAGGGATTGATGTTTCTTTCAAAAATAAATTGTTCAGT
GTGTTAAAGATAATAAAATATTCAAAAGCGTTTCTATATTTTTCAAGGTG
GATGGATGATGTTGGCTAACTATACAAACAAATTTGCAAGCTCAACTGCA
ACTGAAATGACAATTGGTGACTTGGATTCATTTCTTCAGCTTCAAAATGG
AGATTTTCTATTGGATGGGGACACTATCTTCCGCAAATTCATTCTCAAAC
TCCAATCACAGAAATCAGGTTTTATTGTCACAAGCCAAACGTTGGAAGAA
CAATAAGCTTCGTCACAAACCATAATGCAGTTGGTGTTGAGCTAAAAGAA
TATATCTTAGGTCTCAATAATGGTGGGTTATGTAACCGTGCAATAGGTCG
AACCGAATCTGTCAGAACATTGGATGATGATACTAGCTTTCTATCACGTA
ATATTAACTGTTTTGGTGGAAGCAGCTGGTTCACACCAAATCAAAGACTT
TATGATCACCCAGTGTGGGCTGATTATTGGCCTAATGGTTTGAGCTCCAA
AGTTCATTTTGTTGTGTTGCCAAATCGTCTAGACTGTGATGATGGGACTC
AGGGTCAAGACACTAAAAAACCTGGCACTTTCAGAGTATACATACGATAA
TATGATATTGATCATCAAATTAGAGCATTCCCACAAAATCCCAAAAATAT
ACAAACATTAGACATGAGCTTGAAAATGAAAAGTTTCATTTAATCATAAA
CAATGAGATCTTTTCTTAGAGCAAGGATTTACGGTCAACTGATTTACAGT
ACCATACAAACTTATCAAACTTAAAAACTTTACATATCGAATTAACTACA
ATATTTTTTATTTATTTTTTCACACTTCTCACAATCTTGTTTCTATGCCT
AGTCCTCGGCCTATATAAAATCATAATATATTTACGAGATATTATTCATC
TAAGAATAGTTTATTTATTTCTTACTGTCTGCCATAATTTATCTAGGACG
ACTATCTTGCGAACAAGCCGTTATCCAGTTTAATTATTACTAATCGAAAA
AACTTCCAAACGTCATATCTCAGTATTCTGATTCCGAGCTTCACTTAGTT
TTCCTTATTCCTTCCGATTGAGTCCTTCTTCCCGTATCTGTTCGTGTTGT
TATTTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038862XLOC_038862Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061996-exon-scaffold_361-1575043694:571952..572346TCONS_00061996-exon-scaffold_361-1575043694:571952..572346Clytia hemisphaericaexon
TCONS_00061996-exon-scaffold_361-1575043694:571331..571415TCONS_00061996-exon-scaffold_361-1575043694:571331..571415Clytia hemisphaericaexon
TCONS_00061996-exon-scaffold_361-1575043694:570700..570816TCONS_00061996-exon-scaffold_361-1575043694:570700..570816Clytia hemisphaericaexon
TCONS_00061996-exon-scaffold_361-1575043694:569288..570349TCONS_00061996-exon-scaffold_361-1575043694:569288..570349Clytia hemisphaericaexon
TCONS_00061996-exon-scaffold_361-1510915933:571952..572346TCONS_00061996-exon-scaffold_361-1510915933:571952..572346Clytia hemisphaericaexon
TCONS_00061996-exon-scaffold_361-1510915933:571331..571415TCONS_00061996-exon-scaffold_361-1510915933:571331..571415Clytia hemisphaericaexon
TCONS_00061996-exon-scaffold_361-1510915933:570700..570816TCONS_00061996-exon-scaffold_361-1510915933:570700..570816Clytia hemisphaericaexon
TCONS_00061996-exon-scaffold_361-1510915933:569288..570349TCONS_00061996-exon-scaffold_361-1510915933:569288..570349Clytia hemisphaericaexon
TCONS_00061996-exon-scaffold_361-1491911889:571952..572346TCONS_00061996-exon-scaffold_361-1491911889:571952..572346Clytia hemisphaericaexon
TCONS_00061996-exon-scaffold_361-1491911889:571331..571415TCONS_00061996-exon-scaffold_361-1491911889:571331..571415Clytia hemisphaericaexon
TCONS_00061996-exon-scaffold_361-1491911889:570700..570816TCONS_00061996-exon-scaffold_361-1491911889:570700..570816Clytia hemisphaericaexon
TCONS_00061996-exon-scaffold_361-1491911889:569288..570349TCONS_00061996-exon-scaffold_361-1491911889:569288..570349Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:569288..572346 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.244674	0.110133	0.363084	0.372101	0.296961	0.182515	0.143597	0.321818	0.319684	0.235769	0.297465	0.430478	1.43892	1.13125	0.302785	0.441781	0.239603	0.511319	1.41796	1.08829	0.292962	0.133303	0.0616411	0.1074	0.601112	0.810224	0.58405	0.0358051	0	0.0276686
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061996 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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