TCONS_00061993 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061993
Unique NameTCONS_00061993
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length578

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061993 ID=TCONS_00061993|Name=TCONS_00061993|organism=Clytia hemisphaerica|type=transcript|length=578bp
CCTTTTGACATTTTGGTGTAAAGAAGAAAGTGGGGAAGGATTGGTCTTCA
AGATCCAATAAAGTGTACAAGATTTCATCGATGACCAATTTCTGTTTGTT
GCACATGCCATACAAATTGAATTCGTTTCCTAAATATCTCAAAATGGCGT
GTGATTGAACGTATGATTCACCGTCAATTTCCAAAGCTGGTACTTGTCCA
AGGGGAAAGgtcttttctgaaatttgaaacAGAGTTAGATTGTTAGAGAA
AATTCAGTTCCATTTTCAATGCTCTTTACTCCGATTCAAGCTGCAGGAAA
CAACGGACGTCAAATCATTAAGCATTATTAAATATAAAGAATATCTTAAG
GCTTCTCTGATCCTTTCTTTCTACTAAAAAGCCAGTTATCTAGACAAGAC
GTCAGTCTTACCATCCCCCTTAATTGTGGGCATATCAGCGAACGTGTAGG
TTTTGTCCTCAAAATCAACGCCTGCGGCACAGAAAGCCAATCTGATTGGA
TCTCCGCGAGCTGCTGTTTTGAAGTAATGGTGAACATATTTTGTTGTGGC
TGACATTGTAATTTTATAACGTGGAATG
Run BLAST on NCBI

transcript from alignment at scaffold_361:526860..532535-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061993 ID=TCONS_00061993|Name=TCONS_00061993|organism=Clytia hemisphaerica|type=transcript|length=5676bp|location=Sequence derived from alignment at scaffold_361:526860..532535- (Clytia hemisphaerica)
CCTTTTGACATTTTGGTGTAAAGAAGAAAGTGGGGAAGGATTGGTCTTCA
AGATCCAATAAAGTGTACAAGATTTCATCGATGACCAATTTCTGTTTGTT
GCACATGCCATACAAATTGAATTCGTTTCCTAAATATCTCAAAATGGCGT
GTGATTGAACATATGATTCTCCATCGATTTGCAAAGCTGGTACTTGTCCA
AGGGGAAAGGTCTTTTCTGAAATGAGAAAGTTTAAAATTGACGTTTTATT
ATGCTCTCTGATGAGACAATCTTCTAATCTGCAAGGCTAGGTTTAGTTTT
GTTAAAGGCGATCCTTCGAATAAGGTAGGCCCATTTAGTCCCGAAGGGCT
TAAAAGTGGAAATTCTTGAATGGGAAAAGAATGCCAGATTGAAAGTAAAA
TCCATCGGCTTCTTTTGAATATTATGCTGTAAGAAATCAAAGAAAGCTCT
AGATTCAATATGTCTAAAAGCGGAGCAAATCCTAAGGTATTTTCTTGTCT
GATAAAGGTTGAAGATTCCTCTCTAGCACTTCTGGCTTTAAATCGAACAC
TAAATTTCAGCTTACCATCAGCTTTAATCTTGGGCATGCAAGCAAACGTG
TACAATTTCTCTTCAAATTCCACCCCAGCAGCGTAGAAAACAATTCGGAT
AGGATCTCCACGAGCTGATGCATCGAGATAGTGGTGGACATATTTTGGTG
CCATGTTTGTCTTTGGTTTTCTAAATGAGAAGAAGGATATATCATTTACT
TCAGTTTGCTAGGTTTCAAAACTAAGGTTTCTGCTATGATAAGAGTCTGC
TTGAAAGTCGTTTATCTTCGTAATATCAACAGAATGTTCATGCGACGAAT
GCTCATTATACCACGAATAGAAAATCATTCAGATAGAAACGAAGACAATT
TTTCAATGAGCCTACCTTAAGGGAAGAAATTTTCGCGGGAACTTAATTTC
GCGGTTGGTCAAATATTTTTTTTCGCGGGAATTTAATTTCGCGGTTCAGC
GATTTTTGAAAAATTCGCGGGAATTTAATTTCGCGGATTGACGATTTTGT
AAAATTTCGCGGGAACTTAATTTCGCGGTTTTAGGCAAAATCCGCGAAAA
CCGCGAAATTTTCTTCCCGCGAAAATTTCTTCCCTTAAGGTACCTTTATT
GATTTCTTTTTAACTTGGTTATTTCTCCAATGTTTAATTTGATTGGATTT
GATTCCAAACCCAGTATTTATACGCAATTTTAAATATGCATAGTAATGGC
ATGCATGATTTAGTTCCAAGTCAAATTTCCTGTTGTCATACGCTTAATAA
TAGTATTGCATCAATTAATTACTCTATAGTAATTACATTTGCTAGATAAG
CATTTCAAAAATAGATGCAATGTCACCGTTCAATGTTTTGTTTATACAAA
AAATATCTACCCTTCAAATATTTTGTGCAAGTTTGCAAATTTAGAGTCAC
TTTTCGGACGATGACCAAGCATTTATTCTGACTTCTTTTTTCAAACCGCC
GGCTGTCTAATTCTCTTCTGTGCAATTTTCCTTGAAAGCCTCACTGTAAA
CTTAAGAGTGGCACACAACTCCTGCCAGATCTTTTAGTTGAGGCTGCTTG
TCTTCTTGCCCGCGCCGTTGCACGAGCTAAGAAATTAGACTGTTTTGTAC
TTATTTTCAAATTCATGGCGTGGCTCCTGCCCCTGTAATGAGATATCATG
AGATCTTTTGAATGAAGAATATTTTTATAAACCCGGGCGAACCTCGCGCA
AAACTTCAAAATATTTCTACCTTTGACGAGTTGCATTTTTTATTTTAGTA
AGACTATTCAACTTAAGAAACGTAAGACCTCATCTTTAGAGATTTCAAAT
GCTTGTATCTTAACTGTGAAGCCATAAGATGGAGACATTTTAGGCTTTTC
TCAGGATCCTTGAAGCAATGCAACATGTAAGGTAAAACCGTCTGATTCTC
CTTTCTCCTCGACCTTTTCACGTTCTTCGTGTTATCATATATAATTCTGC
GTCTTCCTGAAACGAAGCGTTCGAATTTATTTTCCGGTTTCTAAAAAGAA
GCTATTGGAATATTCTTAGAGGGCTATTCGTCTCTTGGTTTTTTTATAAA
CAAGACCAATCATGTCACAGACAAAACACAGCTGGGAAGTTGGGACAATA
TGATAGTAAATTGGCTTAGACCTCTGACTGAACTCTCTGATCATTTTGAG
TCCAGTGAATGGAGCACTTAGCTGGTTCACTTTTTTGAGACAAAAACACC
AAAATTAAAAACAAACCACTTAGTGCTAGAATACGTTTTCGGGTGCGAAA
TTTCGTTTAAGTTTGATTGGAGATCTTCAAAAATACGAGAATAAGGGACA
GGGGCACCACTGAGCTCACTTGATATTTTCAGAGACTATTAATAGGGAGT
TGATAATAATTTGGGGGAGGGGAAATTTCCTCGGCGCCTTATCTCTAATT
TCTGGATCAACTTCTTTCCTTATTTTATTTTGTTTGCTGACCTCGGTGTG
GCGATTCGTATGTAAAAAGATAAATTGATTGAGATGAAATGTGCCCACCT
TAGATAATCTAATCCTATAACAGATTATCCTTTTGCCGTCAAAAAATTGA
AAAAGTGAACGTTTTGGTGGCCATCACTGCAGACAATCGCCGCACATAGC
ATTATTGATCTCAAATCTGAAGGAGAGTAGATATTTTAGTGTTTGGTCAG
AAAATATAAAACATGGCAACATTACCGTCTTTTTTTACACATTATATCTT
TTTTCTAAAAACCGTGAATTTCAAAAATAAAAACAAATCCTTCAAAAATT
TGCTTAAGTGATAAATAAAGATAATCATGATTCCTAGGAGAGGATTACAT
ATCAATTAAGAAATATTTACACGCACAATGGTACTAGCATTGTCTAGAAT
CCATTTTTGCTGCCCATTCTCTCTGCATGCCGTAGAATGTTGTTCCTCGT
TTGTCCAAAAATTTCCTGATATTTTCAACATTTCGATTTCGTTCGTTAAG
AGCTTTAACCCTCTTAAGATACTTTCTATAATTCGAAAACATATCATTCC
CCGATCGAGTTCGAATTAGCGAGAGTCAACTGTAGTTCCACATGTTCGTT
TGATTTTTTCGATCGTGTACCGGTAGGAACTTGGACCAGCTCTGCCCACG
CCACCCGAATAGAAGACAAAGTCTTCGTGTCCCATCATTCGGTTTGTGAG
AATTCCGTGTCCTCCTGAGACGAAGCTGCCCAGTCTTTTTCCCGCTTTCT
AATTTACGGTATTTCTTCGAATAAATGCTCCAGATTTATTTGGACCTACT
TCAGAGGTCTTTTAATTTAACCTTTGTTCGTTCGTCCGTCCGTCCGTTCG
TTTTCTCGGGATTGGCCCATTAGTTTTCTCTGATTTTCGCATAGTGATGC
AAAACGACAGTACTCAAAATGTGAACTCGAATATCAATTAAAATCAATTA
AAAAAAAAATTGGGGGAGGGGGCAAATTTCGGCCAAAAAGTGCCTAAAAA
CGGGTTTTTTTGGACTGAATGAAATTACTTCATTAGCTTTTTCTGATTTG
CATAAAGATAAATTGCAAGGTTCTCTAAAAAGTGGCTGAAGCCGTTTTTT
CCAAGAAAAATTTTTTTAGCTGTAAAAATCGGATTTGGGGAAATTCCATT
TTGTCATTTTTAGGGGAAAAGAGCATTTCTTGCGATCGCCTTGATATTTT
TTTGCACAATGATAAAAAATGGTATTGTTTAAAATCTGATGAGCCTTATA
TTCGAAAAAATGATTTTCTGGGCAAATTAGGGTCAAAAAGTGCCTAAAAT
GTATTTTGGACTTTGTGTGAAATTGCTTTATTAGCTTTTCCTGATTTTTT
ACGCAGTGATGCGAAATTGCAATATCCTTAAAATATAAGACTTCAAGATT
TTTAAAAGAAAAAGTTTTACCCAAATTTTGGATTTGTGGAAGTTGCTTCG
TTAGATTAGAGAAAGAAAGGATTGTTTTTGTTTATGCCCAGCATGGCTCG
ATTTCCAAAAAACCCTTTTATATGGTGCTCTTTTCCTCTAAAACATCGGA
AAGCTGCTTTTAAACGCAATTAAAAAACTCTGGGGCTCTAGTGTTATGAA
TGTTTACGATTGAAATTGAATCTGGTGTTTACTTGATCATTTTAATAGTC
ATCTCCAATCTGGGAAGATATTCTAATAGTTGCTCAGAAAATATCAAACA
TGGCGATATTTTTTCCGTATTATCGTATTCTAGATATCGTGAATTTTACA
AATAAAAACAAATTGACAAAAGGTTAATTTTATGATAAATAAAGATAATG
AAAATTGCTAGAGAGCTTTTTTTAACAACTACACAAGCATTAATTTTGAA
TAATATCTAGCCTAGTACCCATTTTTTGCTGCCATTTCTCTCTGCATGCC
GTAAAATGGTGTTCCTCGTTTCTCCAGGAATTTCTTGACACTTTCGACGT
TTCGGACGCGTTCGTTAAGAGCTTTGACCAATGGGTAATTATCGATGAAA
TTCTTGAATCCTGGGAAAGTGTTTTCTTCAAGGCTCATCGTCTCTAAACT
TGACACTAAGTGTAAATCTGCAATTGATAGCTATGAATAAAAAAAGTAAT
ATCACATTAGCTGTTATCTGTTTTTCGTAAAGTTTTTCTATATGCGCCCC
ACCGCTAACCCAGAGGAAAGGGTGCGTTACTTCCCGTTTGTTTTTGACTG
ATTACCGCCAGCAGGGACCTAGGAGTGCCAAGACCCATGCATCATTTGAT
AGCACCCATAGAGGTGCTCGGGTGTAGACTTTCCAATCGTGGTTACCGTC
TCGAATCGTGTTAATTTATAGTTTTTTGTCTGTTTGCAATGGAAGCTCAG
TGTTTTTTCTTACCTTGTTTCCGACGAAATAATCTTTTCCATTATTATTT
TTCTGTAATATTCCTTCAAACATTTTGTAAGCTCTGGCTGCATAGTCGTG
TATTTTCTTAAATTTTTCTTCCTGAAATTTGTGAAAAACATGGTTTAGAA
GTAAATTCATGATTTGAAAGTTCGCTTTGTTTGAAAATCAGTGCCCTCAA
CTATTGATTTGGAAGATCCTAATTACATAAATGATTTTAAAGGTCTTACT
TTTTGGGCTTTTTTAGTAAAGAAGTAGGTGCCAAGCAGCTGTTCATCGAT
ATTTTGCAAAGTGTACAAAATCTCATCGATGACCAATTTCTGTTTGTTGC
ACATGCCATACAAATCGAATTCGTTTCCTATATATCTTAAAATGGCGTGT
GATTGAACGTATGATTCACCGTCAATTTCCAAAGCTGGTACTTGTCCAAG
GGGAAAGGTCTTTTCTGAAATTTGAAACAGAGTTAGATTGTTAGAGAAAA
TTCAGTTCCATTTTCAATGCTCTTTACTCCGATTCAAGCTGCAGGAAACA
ACGGACGTCAAATCATTAAGCATTATTAAATATAAAGAATATCTTAAGGC
TTCTCTGATCCTTTCTTTCTACTAAAAAGCCAGTTATCTAGACAAGACGT
CAGTCTTACCATCCCCCTTAATTGTGGGCATATCAGCGAACGTGTAGGTT
TTGTCCTCAAAATCAACGCCTGCGGCACAGAAAGCCAATCTGATTGGATC
TCCGCGAGCTGCTGTTTTGAAGTAATGGTGAACATATTTTGTTGTGGCTG
ACATTGTAATTTTATAACGTGGAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038860XLOC_038860Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061993-exon-scaffold_361-1575043694:532376..532535TCONS_00061993-exon-scaffold_361-1575043694:532376..532535Clytia hemisphaericaexon
TCONS_00061993-exon-scaffold_361-1575043694:526860..527277TCONS_00061993-exon-scaffold_361-1575043694:526860..527277Clytia hemisphaericaexon
TCONS_00061993-exon-scaffold_361-1510915933:532376..532535TCONS_00061993-exon-scaffold_361-1510915933:532376..532535Clytia hemisphaericaexon
TCONS_00061993-exon-scaffold_361-1510915933:526860..527277TCONS_00061993-exon-scaffold_361-1510915933:526860..527277Clytia hemisphaericaexon
TCONS_00061993-exon-scaffold_361-1491911889:532376..532535TCONS_00061993-exon-scaffold_361-1491911889:532376..532535Clytia hemisphaericaexon
TCONS_00061993-exon-scaffold_361-1491911889:526860..527277TCONS_00061993-exon-scaffold_361-1491911889:526860..527277Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:526860..532535 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.395612	0.108045	0.38934	0.806414	1.48177	0.988095	3.87561	5.26458	49.9836	28.5237	53.2091	19.9058	5.02209	5.90352	18.1303	31.3238	8.89797	9.24614	3.87136	28.0487	12.1536	13.3702	2.43464	2.95349	1.58851	3.57227	2.06555	1.4324	3.98315	3.21715
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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